Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 6.9e-76 287.3 158 100.0
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 6.9e-76 287.3 158 100.0
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 2.0e-75 285.8 158 99.4
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 2.6e-59 232.3 158 85.4
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 2.6e-59 232.3 158 85.4
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 8.0e-56 220.7 180 73.9
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 9.1e-52 207.2 173 73.4
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 1.2e-51 206.8 172 72.1
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 1.0e-50 203.8 182 69.2
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 1.5e-49 199.9 180 68.9
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 1.6e-48 196.4 177 67.2
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 3.8e-42 175.3 173 64.2
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 2.0e-38 162.9 166 60.2
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 8.9e-31 137.5 102 77.5
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 1.5e-30 136.7 97 77.3
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 2.6e-30 136.0 99 78.8
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 3.4e-30 135.6 100 75.0
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 4.4e-30 135.2 97 77.3
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 1.7e-29 133.3 100 74.0
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 1.7e-29 133.3 100 74.0
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 8.3e-29 131.0 159 51.6
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 1.1e-28 130.6 183 51.4
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 1.8e-28 129.8 86 79.1
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 1.8e-28 129.8 159 54.1
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 2.4e-28 129.4 113 63.7
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 3.2e-28 129.0 98 71.4
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 3.2e-28 129.0 86 80.2
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 3.2e-28 129.0 162 51.9
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 4.1e-28 128.6 95 72.6
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 5.4e-28 128.3 97 73.2
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 7.0e-28 127.9 95 72.6
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 9.2e-28 127.5 86 79.1
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 1.6e-27 126.7 171 51.5
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 1.6e-27 126.7 97 71.1
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 2.7e-27 125.9 92 73.9
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 2.7e-27 125.9 96 71.9
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 3.5e-27 125.6 170 52.9
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 4.6e-27 125.2 96 71.9
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 4.6e-27 125.2 100 70.0
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 5.9e-27 124.8 164 51.2
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 5.9e-27 124.8 178 50.0
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 5.9e-27 124.8 162 51.9
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 5.9e-27 124.8 168 51.8
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 1.0e-26 124.0 86 73.3
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 1.0e-26 124.0 162 50.6
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 1.3e-26 123.6 85 76.5
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 1.3e-26 123.6 86 77.9
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 1.7e-26 123.2 159 53.5
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 1.7e-26 123.2 91 72.5
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 2.3e-26 122.9 183 49.7
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 3.9e-26 122.1 96 69.8
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 3.9e-26 122.1 95 70.5
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 3.9e-26 122.1 86 72.1
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 3.9e-26 122.1 178 49.4
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 6.6e-26 121.3 86 73.3
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 6.6e-26 121.3 96 68.8
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 6.6e-26 121.3 142 51.4
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.1e-25 120.6 156 51.9
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.1e-25 120.6 156 51.9
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 1.1e-25 120.6 86 70.9
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 1.1e-25 120.6 119 62.2
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 1.1e-25 120.6 163 50.3
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 1.5e-25 120.2 86 74.4
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 1.5e-25 120.2 91 72.5
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 1.5e-25 120.2 158 50.6
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.5e-25 120.2 97 68.0
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 1.5e-25 120.2 163 50.3
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 1.5e-25 120.2 165 49.7
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 1.9e-25 119.8 86 74.4
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 2.5e-25 119.4 96 66.7
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 2.5e-25 119.4 97 68.0
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 2.5e-25 119.4 97 68.0
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 3.3e-25 119.0 164 48.2
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 3.3e-25 119.0 112 60.7
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 3.3e-25 119.0 140 53.6
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 3.3e-25 119.0 163 50.9
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 5.6e-25 118.2 96 67.7
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 5.6e-25 118.2 150 52.0
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 7.3e-25 117.9 161 50.9
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 7.3e-25 117.9 86 73.3
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 7.3e-25 117.9 156 52.6
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 9.5e-25 117.5 161 50.9
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 9.5e-25 117.5 100 67.0
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 9.5e-25 117.5 95 67.4
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 9.5e-25 117.5 88 70.5
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 9.5e-25 117.5 168 49.4
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 9.5e-25 117.5 86 73.3
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 9.5e-25 117.5 86 73.3
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 1.6e-24 116.7 126 56.3
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 1.6e-24 116.7 96 67.7
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 2.1e-24 116.3 86 69.8
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 2.8e-24 115.9 163 49.1
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 3.6e-24 115.5 86 72.1
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 3.6e-24 115.5 86 72.1
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 3.6e-24 115.5 85 72.9
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 6.2e-24 114.8 86 72.1
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 6.2e-24 114.8 86 72.1
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 8.0e-24 114.4 165 46.7
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 8.0e-24 114.4 129 51.9
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.4e-23 113.6 86 70.9
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 1.4e-23 113.6 108 58.3
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 6.8e-23 111.3 95 64.2
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 1.3e-21 107.1 97 63.9
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 2.2e-21 106.3 118 51.7
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 6.4e-21 104.8 103 56.3
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.4e-20 102.8 82 64.6
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 7.0e-20 101.3 144 46.5
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 7.0e-20 101.3 83 63.9
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 9.2e-20 100.9 158 46.8
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 3.5e-19 99.0 98 56.1
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 1.2e-16 90.5 65 72.3
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 2.0e-14 83.2 87 52.9
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.3e-13 80.5 86 53.5
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 1.3e-13 80.5 80 52.5
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.2e-13 79.7 86 52.3
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 1.7e-10 70.1 88 46.6
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 9.5e-09 64.3 49 65.3


User provided reference genes

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