Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 1.2e-273 946.0 531 100.0
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 1.4e-269 932.6 531 94.7
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 1.1e-263 912.9 531 92.8
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 7.3e-263 910.2 531 92.7
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 4.8e-254 880.9 534 87.3
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.0e-240 836.6 534 81.8
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.5e-223 779.6 534 77.9
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 1.8e-221 772.7 534 77.2
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 5.3e-221 771.2 534 76.8
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 5.9e-220 767.7 534 77.5
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 5.0e-219 764.6 534 76.8
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 3.3e-207 725.3 534 72.8
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 1.0e-176 624.0 537 62.8
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 2.6e-167 592.8 534 59.2
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 4.4e-167 592.0 533 59.1
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 7.5e-167 591.3 534 59.0
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 2.9e-166 589.3 536 58.4
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 3.2e-165 585.9 533 58.7
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 4.3e-162 575.5 539 57.0
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 7.3e-162 574.7 524 57.8
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 3.6e-161 572.4 537 56.8
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 3.1e-160 569.3 542 55.4
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 6.8e-160 568.2 534 56.6
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.5e-159 567.0 539 57.3
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 1.5e-159 567.0 542 56.3
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 2.6e-159 566.2 542 56.5
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 3.4e-159 565.8 530 57.4
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 7.6e-159 564.7 537 56.8
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 1.3e-158 563.9 525 57.5
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 2.2e-158 563.1 537 56.4
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 2.2e-158 563.1 530 56.8
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 3.7e-158 562.4 537 56.4
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 4.9e-158 562.0 537 56.1
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 6.4e-158 561.6 537 56.6
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 1.1e-157 560.8 542 57.2
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 2.4e-157 559.7 534 53.4
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 3.2e-157 559.3 537 55.7
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 9.2e-157 557.8 523 56.4
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 1.6e-156 557.0 533 55.5
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 3.5e-156 555.8 534 55.8
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 2.3e-155 553.1 540 54.8
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 2.3e-155 553.1 534 56.0
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 3.0e-155 552.7 526 56.5
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 3.9e-155 552.4 534 53.0
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 6.6e-155 551.6 531 55.2
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 6.6e-155 551.6 534 54.3
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 6.6e-155 551.6 537 54.9
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 8.6e-155 551.2 533 55.2
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 3.3e-154 549.3 533 55.2
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 4.3e-154 548.9 533 55.0
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 4.3e-154 548.9 531 55.7
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 5.6e-154 548.5 555 54.4
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 7.3e-154 548.1 539 53.4
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 9.6e-154 547.7 539 55.7
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 3.6e-153 545.8 532 55.1
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 6.2e-153 545.0 560 52.9
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.4e-152 543.9 539 57.7
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.4e-152 543.1 545 54.5
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 4.0e-152 542.3 535 55.7
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 8.9e-152 541.2 530 55.1
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 4.4e-151 538.9 532 55.1
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 5.8e-151 538.5 521 55.3
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 2.2e-150 536.6 532 54.3
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 1.9e-149 533.5 536 54.1
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 7.1e-149 531.6 587 50.9
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 4.6e-148 528.9 542 52.8
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 1.3e-147 527.3 536 53.4
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 2.3e-147 526.6 521 54.3
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 6.6e-147 525.0 534 53.2
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.5e-146 523.9 577 51.0
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 8.1e-145 518.1 522 52.7
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 6.9e-144 515.0 531 53.7
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 7.6e-143 511.5 522 53.1
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 1.7e-142 510.4 532 50.8
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 2.2e-142 510.0 555 51.2
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 9.3e-141 504.6 535 51.4
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 1.1e-138 497.7 535 49.5
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 1.4e-136 490.7 541 50.5
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 9.0e-136 488.0 545 50.1
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.6e-135 486.5 579 48.5
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-133 481.1 498 53.2
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.5e-130 470.7 443 58.0
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 3.3e-130 469.5 451 55.4
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 1.6e-129 467.2 526 48.1
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 6.9e-128 461.8 501 50.7
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 1.9e-125 453.8 526 47.1
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 3.1e-120 436.4 536 47.0
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 3.3e-114 416.4 439 51.0
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 6.3e-113 412.1 536 45.3
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 6.1e-108 395.6 406 53.2
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 8.2e-105 385.2 533 41.7
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 1.4e-104 384.4 402 52.2
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 2.4e-104 383.6 573 42.2
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 5.5e-101 372.5 392 52.8
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.6e-100 370.9 552 40.9
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.4e-99 367.9 541 40.3
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 1.2e-90 338.2 356 50.0
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 4.4e-90 336.3 356 49.7
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 3.7e-89 333.2 500 41.6
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.3e-86 324.7 558 35.7
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 5.0e-86 322.8 289 58.8
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.7e-84 317.0 289 58.8
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.9e-77 294.3 548 36.1
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 6.6e-70 269.2 469 37.5
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 1.9e-69 267.7 291 52.6
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 4.7e-60 236.5 205 61.5
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 5.4e-56 223.0 556 29.1
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 3.9e-54 216.9 572 30.9
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 7.3e-53 212.6 393 37.2
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.1e-47 194.5 161 62.1
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 6.0e-47 193.0 156 64.1
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 6.2e-44 183.0 108 90.7
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 2.6e-42 177.6 169 50.3
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 1.3e-38 165.2 546 26.6
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 1.3e-38 165.2 135 65.2
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 6.9e-35 152.9 136 57.4
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 5.8e-34 149.8 131 58.0
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 7.6e-34 149.4 154 53.9
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 6.9e-27 126.3 106 55.7
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 4.9e-25 120.2 365 31.5
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 4.9e-25 120.2 365 31.5
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 1.2e-23 115.5 100 65.0
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 7.9e-23 112.8 71 81.7
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 5.1e-22 110.2 114 50.9
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.5e-21 107.8 100 59.0
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 7.4e-21 106.3 86 61.6
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.3e-17 95.5 494 26.3
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 4.9e-17 93.6 88 62.5
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 2.7e-15 87.8 94 46.8
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 1.4e-08 65.5 73 43.8
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.0e-06 59.3 59 52.5


User provided reference genes

Program Settings