Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 6.9e-88 327.4 180 100.0
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 8.4e-86 320.5 180 98.3
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.6e-84 316.2 181 97.2
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 3.9e-83 311.6 181 95.0
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 3.9e-83 311.6 181 95.0
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 4.3e-74 281.6 181 85.6
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 6.7e-67 257.7 183 82.0
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 1.0e-62 243.8 181 76.2
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 5.0e-62 241.5 180 77.2
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 5.0e-62 241.5 180 77.2
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 2.1e-60 236.1 181 77.9
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 2.7e-60 235.7 182 74.2
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 2.7e-60 235.7 182 74.2
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 3.6e-60 235.3 182 74.2
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 3.6e-60 235.3 182 72.0
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 3.6e-60 235.3 182 74.2
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 6.7e-59 231.1 180 75.6
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 6.7e-59 231.1 180 75.6
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 8.8e-59 230.7 180 76.1
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 4.7e-52 208.4 180 68.9
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 5.3e-48 194.9 160 73.8
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 5.0e-46 188.3 185 64.9
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 7.5e-42 174.5 183 60.7
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 3.5e-39 165.6 185 56.2
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 5.0e-38 161.8 122 76.2
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 1.1e-37 160.6 183 60.7
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 1.9e-37 159.8 132 73.5
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 4.2e-37 158.7 183 55.2
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 4.2e-37 158.7 183 55.2
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 4.2e-37 158.7 183 55.2
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.6e-36 156.8 184 55.4
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 1.0e-35 154.1 181 51.9
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 1.0e-35 154.1 181 51.9
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.4e-34 148.7 202 52.0
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.4e-32 143.7 185 51.9
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 2.4e-32 142.9 196 52.0
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 9.1e-32 141.0 181 47.5
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 9.1e-32 141.0 181 47.5
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.0e-31 139.8 82 81.7
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 7.7e-31 137.9 181 47.0
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 7.7e-31 137.9 181 47.0
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 2.9e-30 136.0 181 54.1
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 4.7e-28 128.6 81 85.2
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.6e-26 122.9 180 47.8
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 4.1e-24 115.5 184 44.6
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 3.8e-22 109.0 202 48.5
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 5.6e-21 105.1 152 51.3
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 7.3e-21 104.8 202 43.6
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.6e-20 103.6 182 48.9
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.6e-20 103.6 218 42.2
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.1e-20 103.2 191 45.0
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.8e-20 102.8 189 44.4
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 6.1e-20 101.7 193 48.7
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 6.1e-20 101.7 201 46.8
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.4e-19 100.5 207 40.6
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.8e-19 100.1 189 42.9
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 2.3e-19 99.8 183 48.1
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 2.3e-19 99.8 205 41.5
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.0e-19 99.4 196 43.4
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 3.0e-19 99.4 196 43.4
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 5.2e-19 98.6 175 42.3
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.2e-19 98.6 208 43.3
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 8.9e-19 97.8 184 42.9
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.2e-18 97.4 180 45.6
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.2e-18 97.4 204 45.6
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.5e-18 97.1 193 47.2
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 2.6e-18 96.3 199 47.2
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.6e-18 96.3 195 40.0
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.4e-18 95.5 199 42.2
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.7e-18 95.1 193 46.6
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 7.5e-18 94.7 195 40.0
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 7.5e-18 94.7 174 44.3
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 1.3e-17 94.0 193 40.9
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 2.9e-17 92.8 172 43.6
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 4.9e-17 92.0 201 40.8
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 4.9e-17 92.0 180 39.4
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 6.4e-17 91.7 193 45.6
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 6.4e-17 91.7 198 40.4
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 6.4e-17 91.7 180 39.4
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.1e-16 90.9 188 41.0
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 1.1e-16 90.9 181 43.1
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 1.1e-16 90.9 184 41.8
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.4e-16 90.5 192 45.8
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.4e-16 90.5 185 41.6
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 7.0e-16 88.2 210 40.0
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 7.0e-16 88.2 201 45.3
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 7.0e-16 88.2 123 45.5
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 9.2e-16 87.8 205 42.0
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 9.2e-16 87.8 204 38.7
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 9.2e-16 87.8 162 40.1
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 2.0e-15 86.7 134 52.2
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 2.0e-15 86.7 200 44.0
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.0e-15 86.7 139 50.4
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 3.5e-15 85.9 188 39.9
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 3.5e-15 85.9 164 41.5
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 4.6e-15 85.5 181 39.8
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.3e-14 84.0 183 39.3
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.3e-14 84.0 188 40.4
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 2.3e-14 83.2 189 40.7
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 2.3e-14 83.2 179 37.4
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 3.0e-14 82.8 199 39.7
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 3.0e-14 82.8 192 41.1
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 3.9e-14 82.4 191 38.7
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 3.9e-14 82.4 187 41.7
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 8.6e-14 81.3 186 40.3
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 8.6e-14 81.3 192 38.0
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 8.6e-14 81.3 194 37.1
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.5e-13 80.5 74 62.2
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 3.3e-13 79.3 186 37.1
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 4.3e-13 79.0 200 36.5
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 4.3e-13 79.0 175 42.9
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 4.3e-13 79.0 184 41.3
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 4.3e-13 79.0 182 40.7
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 5.6e-13 78.6 180 36.7
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 5.6e-13 78.6 187 41.7
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 7.3e-13 78.2 183 39.9
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 9.5e-13 77.8 182 36.3
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 1.2e-12 77.4 121 43.8
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.2e-12 77.4 80 56.2
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.2e-12 77.4 185 40.0
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.6e-12 77.0 172 40.7
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 2.1e-12 76.6 77 54.5
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.1e-12 76.6 185 40.0
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.8e-12 76.3 194 39.7
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 3.6e-12 75.9 203 36.9
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 8.0e-12 74.7 158 37.3
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 1.1e-11 74.3 172 34.9
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 1.1e-11 74.3 206 35.9
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.4e-11 73.9 134 39.6
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 2.3e-11 73.2 179 38.5
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 4.0e-11 72.4 185 39.5
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 4.0e-11 72.4 191 35.6
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 8.9e-11 71.2 170 41.8
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 5.8e-10 68.6 197 37.6
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 5.8e-10 68.6 180 38.9
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.3e-09 67.4 184 39.1
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 6.4e-09 65.1 185 38.9
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 8.3e-09 64.7 189 38.6
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.4e-08 63.9 79 49.4
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 4.1e-08 62.4 182 33.0
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 1.6e-07 60.5 174 33.3
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.0e-06 57.8 186 36.6


User provided reference genes

Program Settings