Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 2.9e-60 235.0 113 100.0
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.1e-51 206.5 100 100.0
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 1.4e-49 199.5 98 98.0
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 1.4e-49 199.5 98 98.0
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 9.7e-48 193.4 96 96.9
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 6.3e-47 190.7 96 94.8
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 5.3e-46 187.6 96 93.8
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 9.1e-46 186.8 96 92.7
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 9.1e-46 186.8 96 92.7
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.0e-45 185.7 96 91.7
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 2.7e-45 185.3 96 91.7
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 5.9e-45 184.1 96 89.6
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 2.9e-44 181.8 91 94.5
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 9.8e-40 166.8 89 87.6
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.3e-39 166.4 98 80.6
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.3e-39 166.4 98 80.6
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 2.2e-39 165.6 84 91.7
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 7.0e-38 160.6 90 84.4
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 7.7e-37 157.1 91 79.1
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 3.8e-36 154.8 105 71.4
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 6.5e-36 154.1 97 73.2
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 6.5e-36 154.1 97 71.1
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 8.5e-36 153.7 91 78.0
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.9e-35 152.5 90 76.7
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.5e-35 152.1 97 68.0
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 9.5e-35 150.2 95 75.8
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 2.1e-34 149.1 89 73.0
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 2.1e-34 149.1 97 68.0
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.8e-34 148.7 89 76.4
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 2.8e-34 148.7 89 76.4
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 3.6e-34 148.3 89 73.0
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 4.7e-34 147.9 93 75.3
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 4.7e-34 147.9 92 71.7
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 6.1e-34 147.5 95 73.7
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 8.0e-34 147.1 97 67.0
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 8.0e-34 147.1 92 72.8
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 1.0e-33 146.7 96 66.7
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.0e-33 146.7 87 77.0
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.4e-33 146.4 89 74.2
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.8e-33 146.0 90 71.1
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.8e-33 146.0 95 74.7
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.3e-33 145.6 97 67.0
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 2.3e-33 145.6 96 68.8
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.3e-33 145.6 85 76.5
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 4.0e-33 144.8 91 71.4
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 5.2e-33 144.4 79 83.5
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 6.8e-33 144.1 91 70.3
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 8.8e-33 143.7 92 71.7
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 8.8e-33 143.7 92 70.7
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 8.8e-33 143.7 92 70.7
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 8.8e-33 143.7 92 70.7
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 1.2e-32 143.3 92 69.6
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 1.2e-32 143.3 92 70.7
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 1.5e-32 142.9 97 67.0
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.5e-32 142.9 97 64.9
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 1.5e-32 142.9 89 71.9
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.6e-32 142.1 92 68.5
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.6e-32 142.1 92 68.5
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 3.4e-32 141.7 89 71.9
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 3.4e-32 141.7 97 68.0
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 4.4e-32 141.4 93 72.0
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 5.7e-32 141.0 91 73.6
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 5.7e-32 141.0 88 70.5
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 7.5e-32 140.6 82 78.0
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 7.5e-32 140.6 82 78.0
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 7.5e-32 140.6 94 68.1
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 7.5e-32 140.6 94 71.3
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.3e-31 139.8 89 69.7
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.3e-31 139.8 93 71.0
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 1.3e-31 139.8 77 81.8
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.7e-31 139.4 77 80.5
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.7e-31 139.4 77 80.5
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.7e-31 139.4 77 80.5
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 2.2e-31 139.0 96 66.7
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.2e-31 139.0 84 76.2
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 2.2e-31 139.0 77 80.5
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 2.2e-31 139.0 98 67.3
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.2e-31 139.0 93 65.6
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 2.8e-31 138.7 86 72.1
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 2.8e-31 138.7 77 79.2
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.7e-31 138.3 93 65.6
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 4.9e-31 137.9 95 64.2
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 6.3e-31 137.5 85 71.8
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 8.3e-31 137.1 98 66.3
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 8.3e-31 137.1 91 70.3
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 8.3e-31 137.1 91 70.3
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 8.3e-31 137.1 95 65.3
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 1.4e-30 136.3 87 71.3
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 1.8e-30 136.0 91 70.3
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 1.8e-30 136.0 77 77.9
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.8e-30 136.0 80 76.2
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 2.4e-30 135.6 80 76.2
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 2.4e-30 135.6 80 75.0
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 5.4e-30 134.4 80 75.0
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 7.0e-30 134.0 90 65.6
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 9.2e-30 133.7 93 67.7
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.6e-29 132.9 80 75.0
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 2.7e-29 132.1 77 75.3
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 3.5e-29 131.7 102 62.7
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 4.5e-29 131.3 121 55.4
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 7.8e-29 130.6 93 65.6
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 7.8e-29 130.6 93 65.6
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 1.0e-28 130.2 82 73.2
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 6.6e-28 127.5 116 53.4
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 2.5e-27 125.6 80 71.2
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 4.3e-27 124.8 70 81.4
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 4.3e-27 124.8 66 92.4
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 4.7e-26 121.3 88 59.1
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 8.0e-26 120.6 77 74.0
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.2e-24 116.7 74 67.6
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 2.0e-24 115.9 63 82.5
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 9.8e-24 113.6 64 76.6
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 9.8e-24 113.6 74 68.9
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.7e-23 112.8 64 75.0
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 1.7e-23 112.8 70 72.9
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 6.4e-23 110.9 79 63.3
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 1.8e-22 109.4 63 71.4
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 7.8e-21 104.0 85 63.5
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 1.3e-20 103.2 64 70.3
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 3.0e-20 102.1 94 52.1
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 6.6e-20 100.9 65 63.1
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 4.3e-19 98.2 64 70.3
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 7.3e-19 97.4 52 76.9
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 9.5e-19 97.1 65 64.6
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 6.2e-18 94.4 69 59.4
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 2.3e-17 92.4 89 51.7
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 5.8e-16 87.8 90 48.9
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 2.2e-15 85.9 85 47.1
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.4e-14 83.2 68 60.3
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 1.4e-14 83.2 61 60.7
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 7.0e-14 80.9 83 47.0
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 5.0e-12 74.7 60 58.3
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 7.3e-11 70.9 76 48.7
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 8.1e-10 67.4 46 67.4
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 1.8e-09 66.2 30 86.7


User provided reference genes

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