Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 4.0e-120 434.9 237 100.0
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 1.3e-99 366.7 237 87.8
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 3.0e-99 365.5 237 89.0
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 2.7e-92 342.4 214 85.5
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 2.8e-89 332.4 239 82.4
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 5.3e-72 275.0 253 70.0
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 8.5e-70 267.7 261 69.3
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 8.3e-65 251.1 253 70.8
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.4e-64 250.4 248 70.6
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.7e-63 246.1 222 72.5
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 3.5e-63 245.7 252 70.2
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 1.3e-62 243.8 249 67.9
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 5.4e-56 221.9 244 59.4
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.2e-52 210.7 252 62.7
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 6.3e-49 198.4 248 54.0
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.4e-48 196.4 250 60.0
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 1.6e-47 193.7 252 57.5
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.7e-46 190.3 255 53.3
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 8.6e-46 188.0 250 58.0
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 6.1e-44 181.8 256 52.0
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 2.2e-41 173.3 250 48.4
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 2.2e-41 173.3 250 48.4
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 2.9e-41 172.9 250 48.4
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 8.3e-41 171.4 254 48.0
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 4.1e-40 169.1 262 53.4
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 2.0e-39 166.8 240 47.9
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 4.6e-39 165.6 243 49.8
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.5e-37 159.8 251 47.4
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 4.1e-32 142.5 259 51.4
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.9e-29 133.7 274 43.4
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 4.3e-29 132.5 272 44.9
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 1.8e-27 127.1 258 46.5
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 3.5e-23 112.8 231 36.8
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 3.0e-22 109.8 236 36.4
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 3.0e-22 109.8 233 36.1
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 5.1e-22 109.0 233 36.5
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 1.5e-21 107.5 240 38.8
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.5e-21 107.5 240 38.8
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 9.6e-21 104.8 237 39.2
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 2.1e-20 103.6 245 37.6
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.8e-20 103.2 230 40.0
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 8.1e-20 101.7 233 39.5
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 8.1e-20 101.7 233 39.1
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 8.1e-20 101.7 233 39.1
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 8.1e-20 101.7 199 41.2
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 1.8e-19 100.5 242 36.4
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 4.0e-19 99.4 235 41.3
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 5.2e-19 99.0 248 35.9
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.8e-19 98.6 243 38.3
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 8.9e-19 98.2 198 38.9
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 1.2e-18 97.8 242 37.2
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.5e-18 97.4 226 37.6
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.0e-18 97.1 241 37.3
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 2.0e-18 97.1 208 38.9
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 3.4e-18 96.3 203 39.4
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 4.4e-18 95.9 240 36.7
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 5.8e-18 95.5 231 34.2
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 7.6e-18 95.1 238 37.0
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 1.3e-17 94.4 221 37.6
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.3e-17 94.4 228 38.2
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.3e-17 94.4 221 39.4
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 2.2e-17 93.6 242 35.5
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 4.9e-17 92.4 240 36.2
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 6.4e-17 92.0 233 38.6
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 6.4e-17 92.0 225 37.3
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 1.1e-16 91.3 218 34.9
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.1e-16 91.3 207 41.1
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.1e-16 91.3 242 37.6
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.4e-16 90.1 235 37.9
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 3.2e-16 89.7 227 33.9
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 3.2e-16 89.7 233 35.2
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 4.2e-16 89.4 233 36.9
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 4.2e-16 89.4 226 38.1
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 7.1e-16 88.6 237 35.4
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 7.1e-16 88.6 197 37.6
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 1.2e-15 87.8 227 34.4
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 1.6e-15 87.4 213 37.6
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 2.1e-15 87.0 237 35.4
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 2.7e-15 86.7 241 36.5
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 6.0e-15 85.5 220 35.9
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 7.8e-15 85.1 245 35.1
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 7.8e-15 85.1 248 33.5
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 7.8e-15 85.1 222 38.3
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.3e-14 84.3 241 36.9
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.0e-14 83.2 230 35.2
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 6.6e-14 82.0 237 33.8
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 6.6e-14 82.0 226 33.6
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 6.6e-14 82.0 215 34.4
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 8.7e-14 81.6 233 36.9
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 1.5e-13 80.9 233 33.0
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.9e-13 80.5 203 35.0
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.3e-13 79.7 207 32.9
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 4.3e-13 79.3 245 33.5
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 5.6e-13 79.0 240 32.9
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 7.3e-13 78.6 177 36.2
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.3e-12 77.8 215 33.5
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.6e-12 77.4 209 34.0
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 2.1e-12 77.0 173 34.1
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 4.8e-12 75.9 182 35.7
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 4.8e-12 75.9 262 31.3
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 4.8e-12 75.9 200 37.5
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 6.2e-12 75.5 198 33.3
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.2e-12 75.5 231 35.1
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.1e-11 74.7 114 42.1
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 2.4e-11 73.6 242 33.9
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 9.0e-11 71.6 229 30.6
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 1.2e-10 71.2 228 33.3
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.2e-10 71.2 211 34.6
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.5e-10 70.9 196 33.7
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.0e-10 70.5 211 34.6
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 3.4e-10 69.7 228 30.7
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 3.4e-10 69.7 184 35.3
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 9.9e-10 68.2 202 36.1
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 1.3e-09 67.8 176 33.0
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.3e-09 67.8 197 35.0
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 4.9e-09 65.9 235 29.4
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.4e-09 65.5 273 28.6
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 1.4e-08 64.3 124 38.7
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.4e-08 62.4 266 29.7
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 7.1e-08 62.0 96 41.7
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 9.3e-08 61.6 187 34.2
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.2e-07 61.2 193 33.7
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.6e-07 60.8 178 32.6
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.1e-07 60.5 177 31.1
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 2.7e-07 60.1 251 34.7
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 2.3e-06 57.0 181 32.0
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.9e-06 56.2 203 33.0


User provided reference genes

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