Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 4177.1 2199 100.0
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 4145.5 2199 99.3
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 4048.0 2205 97.1
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 4045.4 2206 97.2
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 3702.5 2224 89.3
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 3628.2 2321 84.7
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 3627.4 2238 86.9
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 3578.1 2216 86.4
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 3563.5 2226 86.0
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 3370.9 2170 83.3
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 3024.6 2208 73.7
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2568.5 2223 63.0
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2533.1 2214 62.9
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2532.7 2272 61.1
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2519.2 2175 63.3
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2516.9 2228 62.2
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2509.9 2220 61.6
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2506.9 2132 64.0
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2503.4 2266 60.6
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2497.2 2156 62.4
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2487.6 2174 62.5
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2474.9 2227 61.1
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2458.3 2152 62.4
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2455.6 2178 61.6
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2443.7 2151 62.1
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2438.7 2181 62.0
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2432.5 2210 60.3
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2423.7 2232 59.6
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2401.7 2173 61.1
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2399.8 1896 67.0
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2391.7 2217 59.5
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2375.5 2169 59.8
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2361.6 2214 58.9
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2358.2 2190 59.0
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2351.2 2226 58.2
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2343.9 2199 58.8
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2341.6 2126 59.9
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2338.1 2208 59.4
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2337.0 2157 59.2
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2333.9 2219 58.2
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2329.3 2161 58.9
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2318.1 2219 57.9
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2310.8 2249 58.3
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2284.2 2164 58.6
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2284.2 2217 57.0
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2282.7 2055 59.9
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2267.7 2162 57.2
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2256.5 2222 57.1
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2256.1 2094 58.5
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2256.1 2094 58.5
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2254.9 2063 59.2
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2224.1 2061 58.9
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2222.6 2207 56.2
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2216.0 2196 57.1
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2215.3 2083 58.0
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2204.9 2508 52.6
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2192.9 2167 56.6
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2189.1 2197 55.6
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2186.0 1632 69.4
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2145.5 2083 57.0
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2137.8 2219 54.5
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2112.4 2399 51.9
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2107.4 2153 56.9
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2105.5 2291 53.5
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2088.2 2286 53.1
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2075.8 2159 54.1
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2042.7 2007 56.8
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2034.6 1449 72.4
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 1989.2 1984 55.5
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 1958.0 2260 51.4
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 1940.6 2111 52.9
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1907.1 2369 49.1
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1858.6 3114 40.5
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1799.3 2205 47.8
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1775.8 2166 48.9
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1694.1 1760 55.5
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1645.2 1984 48.5
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1630.9 1776 53.5
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1609.7 1712 52.7
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1573.1 1753 50.9
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1561.6 1129 71.5
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 0.0e+00 1558.5 1054 82.1
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1484.9 2269 41.4
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 0.0e+00 1419.8 833 89.0
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1409.0 2156 41.3
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1335.1 1343 54.0
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1281.9 2080 40.7
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1249.2 1998 40.0
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1190.6 1566 45.0
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1170.6 2066 38.1
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1164.1 918 65.9
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1100.5 1030 57.7
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1087.0 2147 35.6
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 0.0e+00 1082.8 1481 46.1
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 6.5e-273 945.7 1056 52.7
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 2.7e-271 940.3 827 58.9
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 4.0e-230 803.5 1058 45.8
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 8.9e-230 802.4 1410 40.1
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 2.0e-205 721.5 962 46.6
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 2.4e-198 698.0 996 43.3
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 4.9e-196 690.3 723 54.2
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 6.0e-194 683.3 842 47.6
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 3.7e-183 647.5 578 59.9
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.6e-178 630.6 442 74.2
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 1.5e-173 615.5 484 66.1
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 4.2e-163 580.9 386 75.1
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 2.3e-153 548.5 377 73.2
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 8.3e-151 540.0 432 66.0
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 4.4e-128 464.5 412 58.3
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 1.4e-113 416.4 811 37.2
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.6e-106 392.9 290 69.0
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 3.2e-102 378.6 264 73.5
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 5.3e-97 361.3 364 58.0
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 4.4e-96 358.2 884 31.3
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 8.4e-95 354.0 1493 26.2
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 1.5e-91 343.2 598 38.1
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 6.2e-90 337.8 291 58.4
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 4.2e-78 298.5 287 58.5
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 5.5e-78 298.1 1771 23.5
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 3.1e-65 255.8 160 80.6
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 2.6e-64 252.7 591 33.5
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 2.6e-64 252.7 312 49.0
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 5.9e-64 251.5 422 40.8
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.2e-55 223.0 152 72.4
CARHR059590 Cardamine hirsuta HOM05D003845 ORTHO05D004161 1.7e-50 206.8 296 56.4
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.2e-50 206.5 168 66.1
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 5.9e-48 198.4 180 62.2
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 5.9e-48 198.4 180 62.2
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 5.9e-48 198.4 180 62.2
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 5.9e-48 198.4 180 62.2
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 2.9e-47 196.1 232 51.7
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 1.5e-46 193.7 125 80.8
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.0e-44 187.6 414 37.4
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.2e-42 179.9 124 75.0
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 3.2e-38 166.0 146 65.1
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 5.2e-36 158.7 129 65.9
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 9.1e-33 147.9 618 24.4
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 1.0e-31 144.4 499 29.7
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.3e-31 144.1 327 33.6
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.1e-29 136.7 214 38.8
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 4.1e-25 122.5 116 60.3
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 2.9e-23 116.3 269 40.9
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 6.6e-23 115.2 170 46.5
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.1e-21 110.2 69 79.7
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 5.7e-19 102.1 80 65.0
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 7.5e-19 101.7 75 70.7
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 9.8e-19 101.3 75 70.7
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 9.8e-19 101.3 149 40.9
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 1.7e-18 100.5 484 26.0
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.3e-15 90.1 100 54.0
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 2.3e-15 90.1 53 83.0
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 8.6e-15 88.2 125 46.4
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 2.1e-13 83.6 56 76.8
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 2.1e-13 83.6 54 61.1
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 2.8e-13 83.2 53 77.4
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 4.7e-13 82.4 70 62.9
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.7e-13 82.4 53 73.6
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 6.2e-13 82.0 61 59.0
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 1.8e-12 80.5 56 71.4
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 3.1e-12 79.7 53 77.4
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.0e-12 79.3 62 64.5
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 8.9e-12 78.2 56 66.1
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.2e-11 77.8 54 68.5
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 3.4e-11 76.3 71 56.3
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 5.8e-11 75.5 67 56.7
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 9.8e-11 74.7 57 61.4
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.9e-09 70.5 42 81.0
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 1.9e-09 70.5 115 37.4
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 2.0e-08 67.0 44 79.5
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 6.0e-08 65.5 344 25.9
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.0e-07 64.7 50 64.0
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 2.3e-07 63.5 51 64.7
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 3.0e-07 63.2 63 55.6
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 5.0e-07 62.4 47 55.3
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.6e-07 62.0 60 46.7
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 9.5e-06 58.2 53 56.6


User provided reference genes

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