Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.2e-194 682.2 363 100.0
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 6.1e-144 514.6 290 97.6
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 1.1e-137 493.8 296 92.6
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 7.3e-137 491.1 299 91.0
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 5.2e-135 485.0 325 83.7
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 3.4e-126 455.7 337 80.4
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 2.9e-125 452.6 337 79.8
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 8.3e-125 451.1 340 79.4
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 7.0e-124 448.0 338 79.3
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.7e-122 443.4 292 86.6
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 2.9e-117 426.0 318 79.9
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.6e-115 420.2 293 84.3
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 7.3e-113 411.4 245 83.7
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 4.7e-112 408.7 245 83.3
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 4.0e-111 405.6 292 81.5
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.1e-108 397.5 245 83.3
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 9.0e-103 377.9 244 76.6
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.8e-96 355.5 292 73.6
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 6.2e-96 355.1 291 72.9
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 9.3e-92 341.3 317 67.8
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 4.6e-91 339.0 294 73.5
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.1e-89 334.3 320 64.7
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 9.6e-89 331.3 300 69.7
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 1.3e-88 330.9 245 70.6
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.6e-88 330.5 298 69.8
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.1e-88 330.1 294 70.4
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 3.1e-87 326.2 238 69.3
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 3.1e-87 326.2 294 70.7
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 9.0e-87 324.7 244 71.3
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.2e-86 324.3 294 69.4
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.2e-86 324.3 247 67.6
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.2e-86 324.3 292 70.9
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 3.4e-86 322.8 293 70.6
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 9.9e-86 321.2 249 66.7
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 1.7e-85 320.5 245 68.6
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.2e-85 320.1 332 63.0
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 3.8e-85 319.3 301 68.1
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 4.9e-85 318.9 245 68.6
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 4.9e-85 318.9 245 68.6
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 4.9e-85 318.9 295 68.8
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 8.4e-85 318.2 267 63.7
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 8.4e-85 318.2 247 67.6
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 8.4e-85 318.2 364 58.5
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.1e-84 317.8 300 67.0
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.4e-84 317.4 367 57.5
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 3.2e-84 316.2 292 68.2
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 3.2e-84 316.2 245 66.5
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 3.2e-84 316.2 245 66.5
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 4.2e-84 315.8 247 68.0
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 5.5e-84 315.5 246 67.1
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 7.1e-84 315.1 247 66.8
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 7.1e-84 315.1 230 70.0
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 7.1e-84 315.1 230 69.6
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 1.6e-83 313.9 245 67.8
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.7e-83 313.2 244 66.8
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.7e-83 313.2 228 70.2
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 3.5e-83 312.8 237 67.5
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.5e-83 312.8 247 68.0
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.6e-83 312.4 242 67.8
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.6e-83 312.4 300 67.7
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.3e-82 310.8 247 66.8
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 2.3e-82 310.1 295 68.1
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.0e-82 309.7 245 67.3
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 3.0e-82 309.7 245 66.5
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 3.9e-82 309.3 254 64.2
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.9e-82 309.3 245 64.9
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.7e-82 308.5 246 64.6
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.1e-81 307.8 228 68.9
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.5e-81 307.4 247 64.0
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 2.5e-81 306.6 344 59.9
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 3.3e-81 306.2 301 56.5
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 5.6e-81 305.4 294 67.0
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 5.6e-81 305.4 293 66.9
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.6e-81 305.4 307 64.8
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 7.4e-81 305.1 247 65.6
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.3e-80 304.3 280 60.7
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 1.6e-80 303.9 245 64.1
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 2.1e-80 303.5 296 66.9
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 2.8e-80 303.1 338 59.8
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 8.2e-80 301.6 245 65.3
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 8.2e-80 301.6 247 62.8
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 8.2e-80 301.6 327 61.8
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 1.1e-79 301.2 246 65.9
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 1.8e-79 300.4 230 68.3
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 2.4e-79 300.1 247 62.3
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.4e-79 300.1 247 62.3
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.4e-79 300.1 247 62.3
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 6.9e-79 298.5 248 64.5
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.5e-78 297.4 247 61.5
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 5.8e-78 295.4 264 62.1
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 3.8e-77 292.7 252 62.7
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.1e-76 291.2 252 62.3
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.4e-76 290.8 243 65.0
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 3.2e-76 289.7 246 63.0
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 3.5e-75 286.2 294 66.0
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 3.5e-75 286.2 233 63.1
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.0e-74 284.6 244 62.3
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.3e-74 284.3 231 63.6
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.8e-74 283.9 245 62.0
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.9e-73 280.4 246 61.8
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.3e-73 279.6 244 61.1
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 4.3e-73 279.3 217 67.7
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 5.7e-73 278.9 215 67.0
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 4.8e-72 275.8 246 60.6
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 6.3e-72 275.4 247 59.9
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 9.0e-71 271.6 244 60.2
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.6e-70 270.0 244 60.2
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.3e-69 267.7 248 60.1
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.2e-69 266.9 299 59.5
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 7.9e-67 258.5 245 59.2
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.0e-66 258.1 239 58.6
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 3.9e-66 256.1 244 59.0
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 3.9e-66 256.1 225 60.9
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.5e-65 254.2 244 57.8
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 3.7e-64 249.6 245 56.3
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 6.3e-64 248.8 228 58.3
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.1e-60 238.0 201 62.2
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 3.0e-58 229.9 311 55.0
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.3e-56 224.6 235 54.9
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 2.2e-56 223.8 247 53.0
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 4.8e-56 222.6 244 53.7
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 4.5e-54 216.1 235 64.7
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.7e-53 214.2 201 58.7
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 1.1e-52 211.5 225 55.1
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.1e-52 211.5 248 50.4
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 5.5e-52 209.1 192 59.4
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.8e-50 204.1 244 52.0
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.1e-49 201.4 235 49.8
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 9.7e-49 198.4 182 58.8
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 4.8e-48 196.1 203 54.7
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 6.5e-45 185.7 205 52.7
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 5.0e-37 159.5 133 63.9
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 2.2e-32 144.1 258 37.6
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 7.0e-31 139.0 142 53.5
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 7.0e-31 139.0 245 41.6
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 7.7e-30 135.6 252 50.0
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.0e-26 125.2 245 38.0
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 9.8e-25 118.6 54 100.0
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.8e-23 114.4 226 37.2
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.1e-23 113.2 229 34.9
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 7.0e-23 112.5 239 36.0
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.2e-22 111.7 224 38.8
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 1.6e-22 111.3 178 43.3
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 2.0e-22 110.9 239 38.5
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 2.0e-22 110.9 236 36.4
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.0e-22 110.9 232 34.9
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.9e-20 104.4 242 33.9
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.6e-20 102.8 237 38.0
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 9.5e-20 102.1 237 36.7
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.6e-19 100.1 252 32.1
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 4.7e-19 99.8 228 35.5
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 6.1e-19 99.4 235 33.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 8.0e-19 99.0 255 32.5
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 1.0e-18 98.6 229 34.5
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.3e-18 97.4 234 35.0
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 5.2e-18 96.3 241 33.6
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 1.5e-17 94.7 65 70.8
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 2.0e-17 94.4 236 33.9
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 2.0e-17 94.4 270 31.5
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.1e-15 88.6 45 86.7
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 5.4e-15 86.3 238 31.1
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 2.8e-11 73.9 166 35.5
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.8e-10 71.2 214 32.7
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 5.2e-10 69.7 51 58.8
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 1.5e-09 68.2 199 34.7
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 2.6e-09 67.4 253 25.7
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 3.7e-08 63.5 51 52.9
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 3.7e-08 63.5 179 31.8
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 8.3e-08 62.4 52 51.9
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.3e-08 62.4 217 29.5
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 1.1e-07 62.0 156 34.0
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.1e-07 62.0 37 64.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 1.4e-07 61.6 48 54.2


User provided reference genes

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