Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1526.9 826 100.0
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1509.6 821 99.8
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1500.7 821 98.9
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1494.6 826 97.2
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1423.7 833 92.8
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1402.9 827 92.4
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1394.0 827 91.9
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1392.9 827 91.8
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1379.0 828 89.5
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1372.5 831 88.9
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1365.5 836 88.6
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 0.0e+00 1360.9 733 97.3
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1354.0 835 90.1
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1350.9 834 87.4
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1324.7 836 86.6
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1264.6 672 96.4
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1223.0 790 83.5
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1152.9 824 73.7
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1142.5 834 73.3
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 0.0e+00 1135.6 624 92.8
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1132.1 824 73.3
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1131.3 834 74.1
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1126.7 826 75.1
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1123.6 847 73.1
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1120.9 821 74.3
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1120.5 823 72.9
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1117.4 790 73.7
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1117.4 828 73.3
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1112.4 824 73.8
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1109.7 821 74.2
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1109.0 822 70.7
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1107.8 822 70.4
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1106.7 824 73.7
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1105.9 825 70.3
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1104.7 818 71.5
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1101.7 848 69.9
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1100.5 822 70.2
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1100.5 824 73.5
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1100.1 815 72.8
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1097.4 826 72.6
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1095.9 825 69.7
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1092.0 823 71.1
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1090.5 818 70.3
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1085.1 819 70.8
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1082.8 819 69.4
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1082.0 818 69.9
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1082.0 819 70.1
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1080.5 818 69.8
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1079.3 829 70.9
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1078.5 828 72.3
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1077.0 822 70.1
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1076.2 818 69.7
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1076.2 821 70.3
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1075.1 818 69.4
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 4.0e-311 1071.2 932 64.2
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 5.1e-311 1070.8 818 69.2
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 1.6e-309 1065.8 825 69.7
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 6.2e-309 1063.9 831 68.8
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 8.1e-309 1063.5 831 68.7
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 1.1e-308 1063.1 831 68.4
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 1.8e-308 1062.4 824 71.2
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 3.4e-307 1058.1 823 70.2
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 4.4e-307 1057.7 817 68.7
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 5.8e-307 1057.4 837 67.3
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 6.4e-306 1053.9 826 69.1
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 1.2e-304 1049.7 819 70.0
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 1.6e-304 1049.3 819 69.2
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 2.1e-304 1048.9 824 70.4
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 3.5e-304 1048.1 818 67.6
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 7.8e-304 1047.0 811 69.2
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 1.3e-303 1046.2 826 67.3
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 2.3e-303 1045.4 864 67.6
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 1.1e-302 1043.1 825 68.1
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 1.2e-301 1039.6 817 67.7
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 2.1e-301 1038.9 825 68.4
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 6.2e-301 1037.3 850 66.8
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 8.9e-300 1033.5 819 67.6
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 1.2e-299 1033.1 847 66.7
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 1.5e-299 1032.7 835 68.1
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 2.6e-299 1031.9 818 66.7
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 2.6e-299 1031.9 826 67.8
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 3.4e-299 1031.6 825 69.3
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 1.7e-298 1029.2 831 67.5
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 1.2e-296 1023.1 825 66.7
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.6e-296 1022.7 757 71.9
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.1e-296 1022.3 758 71.8
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 2.3e-295 1018.8 812 64.4
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 9.6e-294 1013.4 828 65.6
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.6e-293 1011.5 829 65.3
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 9.9e-291 1003.4 825 66.2
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 4.6e-288 994.6 886 63.1
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.8e-285 985.3 823 63.9
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 1.7e-282 976.1 818 65.3
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 3.5e-280 968.4 668 72.6
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 3.0e-279 965.3 902 60.5
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 7.4e-278 960.7 825 63.8
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.5e-267 926.4 833 59.7
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 6.5e-266 921.0 820 62.4
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 8.4e-266 920.6 647 72.2
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 1.9e-265 919.5 919 58.8
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 2.5e-265 919.1 824 59.7
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.6e-264 916.4 647 71.9
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 2.1e-264 916.0 830 59.6
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 5.1e-263 911.4 774 65.1
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 3.0e-255 885.6 798 56.9
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 3.8e-250 868.6 635 70.6
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.4e-249 866.7 831 59.4
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 8.0e-240 834.3 569 73.3
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.7e-237 826.6 827 52.6
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.6e-232 810.1 828 51.8
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 2.1e-232 809.7 809 52.2
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 1.8e-212 743.4 827 54.5
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 3.1e-212 742.7 784 49.6
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 4.9e-205 718.8 845 52.7
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 7.8e-187 658.3 426 76.3
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.4e-148 531.2 478 61.1
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 5.7e-145 519.2 442 63.3
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 7.2e-132 475.7 322 75.2
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 9.7e-129 465.3 787 36.7
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 2.3e-122 444.1 363 75.2
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 3.5e-118 430.3 784 34.1
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.9e-116 424.5 308 67.5
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 9.1e-111 405.6 279 73.1
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.5e-100 371.7 394 55.3
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 3.5e-94 350.5 855 31.5
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 6.4e-72 276.6 279 56.3
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 3.8e-64 250.8 226 63.7
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.3e-61 242.3 386 45.9
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 1.3e-56 225.7 132 90.2
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 6.0e-46 190.3 140 70.0
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 1.7e-40 172.2 126 70.6
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 8.4e-40 169.9 142 65.5
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 9.3e-31 139.8 149 49.7
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.1e-30 138.7 149 49.0
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 6.1e-30 137.1 110 66.4
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.0e-29 136.3 156 51.9
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 1.1e-20 106.3 71 84.5
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 1.2e-09 69.7 133 42.9
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 6.5e-08 63.9 61 52.5


User provided reference genes

Program Settings