Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p41530 Brassica napus HOM05D003134 ORTHO05D003500 4.1e-67 258.1 143 100.0
BolC6t39271H Brassica oleracea HOM05D003134 ORTHO05D003500 4.1e-67 258.1 143 100.0
BcaC08g46282 Brassica carinata HOM05D003134 ORTHO05D003500 2.0e-66 255.8 143 99.3
A07p34840 Brassica napus HOM05D003134 ORTHO05D003500 3.0e-62 241.9 143 93.7
BraA07t31102Z Brassica rapa HOM05D003134 ORTHO05D003500 3.0e-62 241.9 143 93.7
BcaC08g46286 Brassica carinata HOM05D003134 ORTHO05D003500 2.6e-58 228.8 143 90.9
BcaB03g15807 Brassica carinata HOM05D003134 ORTHO05D003500 2.1e-55 219.2 146 86.3
Sp5g23500 Schrenkiella parvula HOM05D003134 ORTHO05D003500 3.7e-52 208.4 150 78.0
Thhalv10019521m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 1.2e-50 203.4 151 81.5
BolC2t08556H Brassica oleracea HOM05D003134 ORTHO05D003500 3.5e-50 201.8 150 77.3
C02p24530 Brassica napus HOM05D003134 ORTHO05D003500 1.5e-48 196.4 150 76.0
BcaB05g24377 Brassica carinata HOM05D003134 ORTHO05D003500 2.5e-48 195.7 150 76.0
A02p14980 Brassica napus HOM05D003134 ORTHO05D003500 2.1e-47 192.6 150 74.7
BraA02t06565Z Brassica rapa HOM05D003134 ORTHO05D003500 2.1e-47 192.6 150 74.7
A07p32020 Brassica napus HOM05D003134 ORTHO05D003500 8.0e-47 190.7 147 76.2
BraA07t30832Z Brassica rapa HOM05D003134 ORTHO05D003500 8.0e-47 190.7 147 76.2
BcaC08g45971 Brassica carinata HOM05D003134 ORTHO05D003500 8.8e-46 187.2 149 74.5
C06p37610 Brassica napus HOM05D003134 ORTHO05D003500 8.8e-46 187.2 149 74.5
BolC6t38864H Brassica oleracea HOM05D003134 ORTHO05D003500 8.8e-46 187.2 149 74.5
BcaB03g15416 Brassica carinata HOM05D003134 ORTHO05D003500 1.5e-45 186.4 147 74.8
AL2G27290 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 9.1e-43 177.2 148 76.4
Carub.0002s1492 Capsella rubella HOM05D003134 ORTHO05D003500 1.2e-42 176.8 154 76.0
CARHR061210 Cardamine hirsuta HOM05D003134 ORTHO05D003500 2.7e-42 175.6 152 74.3
AT1G68430 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 5.7e-37 157.9 148 68.9
THA.LOC104808293 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 4.5e-34 148.3 165 59.4
Aa31LG4G14620 Aethionema arabicum HOM05D003134 ORTHO05D003500 1.0e-33 147.1 156 59.6
Cfa015853 Carpinus fangiana HOM05D003134 ORTHO05D003500 3.4e-21 105.5 155 49.0
Cfa015852 Carpinus fangiana HOM05D003134 ORTHO05D003500 5.8e-21 104.8 155 48.4
Cfa015849 Carpinus fangiana HOM05D003134 ORTHO05D003500 9.8e-21 104.0 154 48.1
Thecc.02G223300 Theobroma cacao HOM05D003134 ORTHO05D003500 1.7e-20 103.2 163 48.5
Cpa.g.sc65.57 Carica papaya HOM05D003134 ORTHO05D003500 1.1e-19 100.5 169 50.3
Ciclev10016989m.g Citrus clementina HOM05D003134 ORTHO05D003500 1.9e-19 99.8 172 45.3
Gohir.D02G171600 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.9e-19 99.8 162 48.1
Gorai.005G193000 Gossypium raimondii HOM05D003134 ORTHO05D003500 1.9e-19 99.8 162 48.1
TWI31G0745 Tripterygium wilfordii HOM05D003134 ORTHO05D003500 4.1e-19 98.6 169 46.7
Duzib251G0591 Durio zibethinus HOM05D003134 ORTHO05D003500 9.2e-19 97.4 160 45.6
COL.COLO4_32156 Corchorus olitorius HOM05D003134 ORTHO05D003500 1.6e-18 96.7 165 47.3
CiPaw.05G241000 Carya illinoinensis HOM05D003134 ORTHO05D003500 2.1e-18 96.3 167 43.7
Prupe.1G315800 Prunus persica HOM05D003134 ORTHO05D003500 2.1e-18 96.3 145 45.5
Lalb_Chr02g0145791 Lupinus albus HOM05D003134 ORTHO05D003500 3.5e-18 95.5 144 45.1
Sabra10G0091400 Salix brachista HOM05D003134 ORTHO05D003500 4.6e-18 95.1 153 45.8
Manes.06G065600 Manihot esculenta HOM05D003134 ORTHO05D003500 7.8e-18 94.4 158 43.7
Gohir.A03G148500 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.0e-17 94.0 162 45.7
MD16G1038900 Malus domestica HOM05D003134 ORTHO05D003500 2.3e-17 92.8 145 44.8
QL01p040313 Quercus lobata HOM05D003134 ORTHO05D003500 2.3e-17 92.8 162 43.2
Medtr1g110190 Medicago truncatula HOM05D003134 ORTHO05D003500 5.0e-17 91.7 148 49.3
Glyma.20G119200 Glycine max HOM05D003134 ORTHO05D003500 7.3e-16 87.8 145 46.2
MD13G1036300 Malus domestica HOM05D003134 ORTHO05D003500 7.3e-16 87.8 145 42.8
Lj5g0013847 Lotus japonicus HOM05D003134 ORTHO05D003500 9.5e-16 87.4 163 45.4
FvH4_4g26860 Fragaria vesca HOM05D003134 ORTHO05D003500 1.2e-15 87.0 148 43.2
Phvul.007G030600 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 1.2e-15 87.0 147 47.6
TAR374G1690 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.2e-15 87.0 159 41.5
RcHm_v2.0_Chr4g0434621 Rosa chinensis HOM05D003134 ORTHO05D003500 1.6e-15 86.7 148 44.6
Duzib268G0372 Durio zibethinus HOM05D003134 ORTHO05D003500 2.8e-15 85.9 163 47.9
FAN22G0900 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.8e-15 85.9 148 42.6
Psat6g225360 Pisum sativum HOM05D003134 ORTHO05D003500 2.8e-15 85.9 149 45.6
PGR119G2525 Punica granatum HOM05D003134 ORTHO05D003500 2.8e-15 85.9 153 45.1
FAN12G3405 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.6e-15 85.5 147 42.2
VMungo0720G1250 Vigna mungo HOM05D000260 ORTHO05D000318 4.7e-15 85.1 148 46.6
Hma1.2p1_1109F.1_g258190 Hydrangea macrophylla HOM05D003134 ORTHO05D003500 1.4e-14 83.6 158 42.4
TAR433G0003 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.4e-14 83.6 158 43.0
CSS0042149 Camellia sinensis var. sinensis HOM05D003134 ORTHO05D003500 1.8e-14 83.2 166 39.2
Lsat_1_v5_gn_3_80541 Lactuca sativa HOM05D003134 ORTHO05D003500 2.3e-14 82.8 152 42.8
Potri.010G121300 Populus trichocarpa HOM05D003134 ORTHO05D003500 2.3e-14 82.8 154 40.3
CANSAT78G1475 Cannabis sativa HOM05D003134 ORTHO05D003500 3.1e-14 82.4 170 41.2
Cpa.g.sc170.42 Carica papaya HOM05D003134 ORTHO05D003500 3.1e-14 82.4 169 39.1
Nn3g17932 Nelumbo nucifera HOM05D003134 ORTHO05D003500 4.0e-14 82.0 163 42.3
FAN07G2257 Fragaria x ananassa HOM05D003134 ORTHO05D003500 6.8e-14 81.3 142 43.7
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 8.9e-14 80.9 162 41.4
Rhsim08G0083300 Rhododendron simsii HOM05D003134 ORTHO05D003500 8.9e-14 80.9 158 39.2
Prupe.3G146400 Prunus persica HOM05D003134 ORTHO05D003500 1.2e-13 80.5 170 42.4
Sabra04G0066000 Salix brachista HOM05D003134 ORTHO05D003500 1.2e-13 80.5 150 40.7
Sc10g0001080 Simmondsia chinensis HOM05D003134 ORTHO05D003500 3.4e-13 79.0 165 42.4
ClCG01G005860 Citrullus lanatus HOM05D003134 ORTHO05D003500 4.4e-13 78.6 161 41.0
Oeu039736.1 Olea europaea HOM05D003134 ORTHO05D003500 4.4e-13 78.6 163 39.9
CANSAT01G0067 Cannabis sativa HOM05D003134 ORTHO05D003500 5.8e-13 78.2 178 39.3
DCAR_021449 Daucus carota HOM05D003134 ORTHO05D003500 5.8e-13 78.2 151 39.7
Atru.chr1.1630 Acer truncatum HOM05D003134 ORTHO05D003500 7.5e-13 77.8 163 39.3
Lj4P188T25 Lonicera japonica HOM05D003134 ORTHO05D003500 7.5e-13 77.8 162 43.2
Solyc02g086260.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 7.5e-13 77.8 160 41.2
Potri.017G117866 Populus trichocarpa HOM05D003134 ORTHO05D003500 9.9e-13 77.4 151 43.7
SalBow5G3107 Salvia bowleyana HOM05D003134 ORTHO05D003500 9.9e-13 77.4 159 40.3
SalBow5G4218 Salvia bowleyana HOM05D003134 ORTHO05D003500 9.9e-13 77.4 159 40.3
Ciclev10013038m.g Citrus clementina HOM05D003134 ORTHO05D003500 1.3e-12 77.0 158 40.5
Actinidia17642 Actinidia chinensis HOM05D003134 ORTHO05D003500 2.9e-12 75.9 154 43.5
MD17G1247700 Malus domestica HOM05D003134 ORTHO05D003500 3.7e-12 75.5 169 40.2
PGR042G1462 Punica granatum HOM05D003134 ORTHO05D003500 6.4e-12 74.7 164 40.2
Oeu012575.1 Olea europaea HOM05D003134 ORTHO05D003500 8.3e-12 74.3 160 38.1
CsaV3_5G028830 Cucumis sativus L. HOM05D003134 ORTHO05D003500 1.1e-11 73.9 166 39.2
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 1.4e-11 73.6 166 40.4
ClCG11G007810 Citrullus lanatus HOM05D003134 ORTHO05D003500 1.9e-11 73.2 164 37.2
FAN12G3727 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.9e-11 73.2 86 54.7
Oeu012577.1 Olea europaea HOM05D003134 ORTHO05D003500 1.9e-11 73.2 163 38.0
PSO170G0811 Papaver somniferum HOM05D003134 ORTHO05D003500 1.9e-11 73.2 167 35.3
Potri.008G123800 Populus trichocarpa HOM05D003134 ORTHO05D003500 1.9e-11 73.2 87 49.4
SalBow3G2725 Salvia bowleyana HOM05D003134 ORTHO05D003500 3.2e-11 72.4 154 39.0
SGA_v2.0_scaffold49G18114 Striga asiatica HOM05D003134 ORTHO05D003500 3.2e-11 72.4 159 39.0
FAN03G2307 Fragaria x ananassa HOM05D003134 ORTHO05D003500 4.1e-11 72.0 163 38.7
Lalb_Chr10g0091341 Lupinus albus HOM05D003134 ORTHO05D003500 4.1e-11 72.0 152 46.1
Potri.004G097200 Populus trichocarpa HOM05D003134 ORTHO05D003500 4.1e-11 72.0 151 41.1
Sed0007756 Sechium edule HOM05D003134 ORTHO05D003500 4.1e-11 72.0 160 40.0
FAN01G0579 Fragaria x ananassa HOM05D003134 ORTHO05D003500 7.1e-11 71.2 164 38.4
PGSC0003DMG400002449 Solanum tuberosum HOM05D003134 ORTHO05D003500 7.1e-11 71.2 174 38.5
Cc07_g08620 Coffea canephora HOM05D003134 ORTHO05D003500 9.2e-11 70.9 166 36.7
CsaV3_2G033780 Cucumis sativus L. HOM05D003134 ORTHO05D003500 1.6e-10 70.1 173 37.6
FAN17G2365 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.6e-10 70.1 144 38.9
FAN14G3652 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.1e-10 69.7 162 38.3
Sp7g03820 Schrenkiella parvula HOM05D003134 ORTHO05D003500 2.1e-10 69.7 163 36.8
Sed0004988 Sechium edule HOM05D003134 ORTHO05D003500 2.1e-10 69.7 157 36.3
PGSC0003DMG400024380 Solanum tuberosum HOM05D003134 ORTHO05D003500 2.1e-10 69.7 174 37.9
AUR62009019 Chenopodium quinoa HOM05D003134 ORTHO05D003500 2.7e-10 69.3 174 38.5
PSO017G0284 Papaver somniferum HOM05D003134 ORTHO05D003500 2.7e-10 69.3 169 36.7
Peaxi162Scf00104g00142 Petunia axillaris HOM05D003134 ORTHO05D003500 2.7e-10 69.3 147 40.8
Solyc03g034300.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 2.7e-10 69.3 164 40.9
THA.LOC104823851 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 2.7e-10 69.3 162 38.3
Haze_14180 Corylus avellana HOM05D003134 ORTHO05D003500 3.5e-10 68.9 177 37.9
FAN23G1965 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.5e-10 68.9 165 40.6
Manes.02G070500 Manihot esculenta HOM05D003134 ORTHO05D003500 3.5e-10 68.9 157 37.6
TPR.G36596 Trifolium pratense HOM05D003134 ORTHO05D003500 3.5e-10 68.9 162 37.0
Migut.H00233 Erythranthe guttata HOM05D003134 ORTHO05D003500 4.6e-10 68.6 167 37.1
Glyma.02G088600 Glycine max HOM05D003134 ORTHO05D003500 4.6e-10 68.6 159 41.5
Medtr7g082520 Medicago truncatula HOM05D003134 ORTHO05D003500 6.0e-10 68.2 161 35.4
AUR62023283 Chenopodium quinoa HOM05D003134 ORTHO05D003500 7.8e-10 67.8 173 37.6
MELO3C008147.2 Cucumis melo HOM05D003134 ORTHO05D003500 7.8e-10 67.8 166 38.0
Nitab4.5_0000753g0120 Nicotiana tabacum HOM05D003134 ORTHO05D003500 1.0e-09 67.4 108 46.3
Peaxi162Scf00394g00095 Petunia axillaris HOM05D003134 ORTHO05D003500 1.0e-09 67.4 94 48.9
HanXRQChr12g0375681 Helianthus annuus HOM05D003134 ORTHO05D003500 1.3e-09 67.0 158 34.8
MBI16_g37123_MAGBIO Magnolia biondii HOM05D003134 ORTHO05D003500 1.3e-09 67.0 155 36.1
Sed0003377 Sechium edule HOM05D003134 ORTHO05D003500 1.3e-09 67.0 153 37.3
FAN28G2684 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.7e-09 66.6 165 41.2
Glyma.18G294900 Glycine max HOM05D003134 ORTHO05D003500 1.7e-09 66.6 158 41.8
Manes.01G112200 Manihot esculenta HOM05D003134 ORTHO05D003500 1.7e-09 66.6 164 35.4
Oeu008433.1 Olea europaea HOM05D003134 ORTHO05D003500 1.7e-09 66.6 162 35.2
RcHm_v2.0_Chr1g0326241 Rosa chinensis HOM05D003134 ORTHO05D003500 1.7e-09 66.6 178 36.0
TAR622G0779 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.7e-09 66.6 160 35.6
TAR622G1269 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.7e-09 66.6 160 35.6
A07p33710 Brassica napus HOM05D003134 ORTHO05D003500 2.3e-09 66.2 170 34.1
Ca_08085_v3 Cicer arietinum L. HOM05D003134 ORTHO05D003500 2.3e-09 66.2 160 36.2
Psat3g098080 Pisum sativum HOM05D003134 ORTHO05D003500 2.3e-09 66.2 164 40.2
PGR004G0132 Punica granatum HOM05D003134 ORTHO05D003500 2.3e-09 66.2 165 38.8
Ah.16g101650 Amaranthus hybridus HOM05D003134 ORTHO05D003500 3.0e-09 65.9 165 33.9
FAN10G2348 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.0e-09 65.9 164 38.4
Phvul.008G007800 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 3.9e-09 65.5 157 40.8
Lsat_1_v5_gn_2_81120 Lactuca sativa HOM05D003134 ORTHO05D003500 5.1e-09 65.1 161 37.3
Oeu030792.1 Olea europaea HOM05D000260 ORTHO05D000318 5.1e-09 65.1 137 37.2
Sopen03g007090 Solanum pennellii HOM05D003134 ORTHO05D003500 5.1e-09 65.1 167 38.9
ATR1125G046 Amborella trichopoda HOM05D003134 ORTHO05D003500 6.6e-09 64.7 166 35.5
MELO3C005343.2 Cucumis melo HOM05D003134 ORTHO05D003500 6.6e-09 64.7 168 39.3
Gohir.A11G165400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 6.6e-09 64.7 166 34.3
Oeu036853.1 Olea europaea HOM05D003134 ORTHO05D003500 8.6e-09 64.3 162 34.6
FAN02G1640 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.1e-08 63.9 162 36.4
FAN10G3294 Fragaria x ananassa HOM05D000266 ORTHO05D000765 1.1e-08 63.9 162 38.9
Gohir.D11G171400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.1e-08 63.9 166 33.7
Gorai.007G183800 Gossypium raimondii HOM05D003134 ORTHO05D003500 1.1e-08 63.9 166 33.7
AT1G66890 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 1.5e-08 63.5 165 40.0
Lj1g0014230 Lotus japonicus HOM05D003134 ORTHO05D003500 1.5e-08 63.5 171 38.6
FvH4_7g03610 Fragaria vesca HOM05D003134 ORTHO05D003500 1.9e-08 63.2 163 38.0
FAN06G4960 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.9e-08 63.2 163 38.0
Nitab4.5_0000625g0110 Nicotiana tabacum HOM05D003134 ORTHO05D003500 2.5e-08 62.8 163 36.2
VMungo1383G0351 Vigna mungo HOM05D003134 ORTHO05D003500 2.5e-08 62.8 161 39.1
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 3.3e-08 62.4 97 47.4
BraA07t30998Z Brassica rapa HOM05D003134 ORTHO05D003500 4.3e-08 62.0 170 34.1
Cfa007900 Carpinus fangiana HOM05D003134 ORTHO05D003500 4.3e-08 62.0 176 36.9
unitig_0.g841 Utricularia gibba HOM05D003134 ORTHO05D003500 4.3e-08 62.0 145 33.1
CiPaw.03G063500 Carya illinoinensis HOM05D003134 ORTHO05D003500 5.6e-08 61.6 185 36.2
AL2G25140 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 7.3e-08 61.2 165 35.2
Migut.L00500 Erythranthe guttata HOM05D003134 ORTHO05D003500 7.3e-08 61.2 170 37.1
Aa31LG2G3400 Aethionema arabicum HOM05D003134 ORTHO05D003500 9.5e-08 60.8 182 34.6
Thhalv10019248m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 9.5e-08 60.8 168 32.1
FAN16G3541 Fragaria x ananassa HOM05D003134 ORTHO05D003500 9.5e-08 60.8 164 39.0
Lalb_Chr06g0165891 Lupinus albus HOM05D003134 ORTHO05D003500 9.5e-08 60.8 58 62.1
BcaB03g15220 Brassica carinata HOM05D003134 ORTHO05D003500 1.2e-07 60.5 169 36.1
C06p43260 Brassica napus HOM05D003134 ORTHO05D003500 1.2e-07 60.5 170 33.5
QL02p049588 Quercus lobata HOM05D003134 ORTHO05D003500 1.2e-07 60.5 182 34.6
THA.LOC104805579 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 1.2e-07 60.5 180 34.4
Nitab4.5_0015828g0010 Nicotiana tabacum HOM05D003134 ORTHO05D003500 1.6e-07 60.1 163 36.8
Sp5g21880 Schrenkiella parvula HOM05D003134 ORTHO05D003500 1.6e-07 60.1 168 35.1
EL10Ac2g04546 Beta vulgaris HOM05D003134 ORTHO05D003500 2.1e-07 59.7 172 34.9
BcaC08g46122 Brassica carinata HOM05D003134 ORTHO05D003500 2.8e-07 59.3 170 33.5
CiPaw.04G043700 Carya illinoinensis HOM05D003134 ORTHO05D003500 3.6e-07 58.9 173 32.9
ECA238G3055 Erigeron canadensis HOM05D003134 ORTHO05D003500 1.1e-06 57.4 163 35.0
Duzib138G0856 Durio zibethinus HOM05D003134 ORTHO05D003500 1.4e-06 57.0 168 32.1
Carub.0002s1311 Capsella rubella HOM05D003134 ORTHO05D003500 1.8e-06 56.6 168 35.7
QL02p050634 Quercus lobata HOM05D003134 ORTHO05D003500 1.8e-06 56.6 183 32.8
Ah.10g037670 Amaranthus hybridus HOM05D003134 ORTHO05D003500 3.1e-06 55.8 97 45.4
FAN13G0633 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.2e-06 55.1 102 43.1
FAN22G2289 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.2e-06 55.1 164 39.0
Nn4g23933 Nelumbo nucifera HOM05D003134 ORTHO05D003500 6.8e-06 54.7 162 28.4


User provided reference genes

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