Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p40950 Brassica napus HOM05D000442 ORTHO05D019979 2.3e-196 688.7 351 100.0
BolC6t39334H Brassica oleracea HOM05D000442 ORTHO05D019979 1.2e-184 649.8 352 95.7
BcaC08g46343 Brassica carinata HOM05D008492 ORTHO05D019979 3.0e-95 352.8 323 65.0
A01p10300 Brassica napus HOM05D000442 ORTHO05D006868 2.2e-58 230.3 184 71.2
BraA01t00977Z Brassica rapa HOM05D000442 ORTHO05D006868 3.0e-55 219.9 184 70.7
BcaC09g51526 Brassica carinata HOM05D000442 ORTHO05D006868 1.1e-54 218.0 183 70.5
C01p12250 Brassica napus HOM05D000442 ORTHO05D006868 1.1e-54 218.0 183 70.5
BolC1t01201H Brassica oleracea HOM05D000442 ORTHO05D006868 1.1e-54 218.0 183 70.5
BcaNung00008 Brassica carinata HOM05D000442 ORTHO05D006868 2.4e-52 210.3 185 69.7
C08p10430 Brassica napus HOM05D000442 ORTHO05D019979 4.7e-48 196.1 292 51.0
Sp7g15670 Schrenkiella parvula HOM05D000442 ORTHO05D006868 2.5e-41 173.7 190 58.9
BraA03t13327Z Brassica rapa HOM05D000442 ORTHO05D019979 1.3e-34 151.4 85 91.8
Thhalv10000793m.g Eutrema salsugineum HOM05D000442 ORTHO05D006868 3.0e-31 140.2 233 44.2
AL8G12270 Arabidopsis lyrata HOM05D000442 ORTHO05D006868 1.3e-29 134.8 223 43.5
Carub.0008s0173 Capsella rubella HOM05D000442 ORTHO05D006868 2.2e-29 134.0 223 42.6
AT5G46190 Arabidopsis thaliana HOM05D000442 ORTHO05D006868 2.4e-28 130.6 223 42.6
BcaC06g31493 Brassica carinata HOM05D000442 ORTHO05D006868 2.4e-28 130.6 210 44.3
Sp2g11050 Schrenkiella parvula HOM05D000442 ORTHO05D006868 5.4e-28 129.4 206 45.6
A06p46100 Brassica napus HOM05D000442 ORTHO05D006868 2.7e-27 127.1 208 44.7
BraA06t27475Z Brassica rapa HOM05D000442 ORTHO05D006868 7.7e-27 125.6 208 44.2
CARHR175600 Cardamine hirsuta HOM05D000442 ORTHO05D006868 1.3e-26 124.8 211 42.7
C07p29400 Brassica napus HOM05D000442 ORTHO05D006868 5.0e-26 122.9 207 44.0
BolC7t43480H Brassica oleracea HOM05D000442 ORTHO05D006868 5.0e-26 122.9 207 44.0
CARHR225160 Cardamine hirsuta HOM05D000442 ORTHO05D006868 1.5e-25 121.3 196 46.4
Atru.chr10.1168 Acer truncatum HOM05D000442 ORTHO05D006868 9.5e-25 118.6 196 42.9
Aa31LG9G6720 Aethionema arabicum HOM05D000442 ORTHO05D006868 9.5e-25 118.6 211 43.1
AL7G35990 Arabidopsis lyrata HOM05D000442 ORTHO05D006868 9.5e-25 118.6 155 51.0
AT4G18375 Arabidopsis thaliana HOM05D000442 ORTHO05D006868 2.8e-24 117.1 197 44.2
Ciclev10014608m.g Citrus clementina HOM05D000442 ORTHO05D006868 2.8e-24 117.1 209 39.7
Haze_05626 Corylus avellana HOM05D000442 ORTHO05D006868 4.0e-23 113.2 192 41.7
TAR626G1820 Trochodendron aralioides HOM05D000442 ORTHO05D006868 5.2e-23 112.8 196 43.4
Nn4g26604 Nelumbo nucifera HOM05D000442 ORTHO05D006868 6.8e-23 112.5 194 42.8
Nn3g20408 Nelumbo nucifera HOM05D000442 ORTHO05D006868 8.9e-23 112.1 194 41.2
TWI09G1294 Tripterygium wilfordii HOM05D000442 ORTHO05D006868 8.9e-23 112.1 195 41.0
Cfa000924 Carpinus fangiana HOM05D000442 ORTHO05D006868 1.2e-22 111.7 194 41.2
C05p22910 Brassica napus HOM05D001111 ORTHO05D000939 1.5e-22 111.3 110 66.4
CiPaw.09G121800 Carya illinoinensis HOM05D000442 ORTHO05D006868 2.0e-22 110.9 211 40.8
Sabra11G0065800 Salix brachista HOM05D000442 ORTHO05D006868 2.0e-22 110.9 190 41.6
Prupe.4G083200 Prunus persica HOM05D000442 ORTHO05D006868 2.6e-22 110.5 204 40.2
BcaNung06891 Brassica carinata HOM05D001111 ORTHO05D000939 4.4e-22 109.8 110 65.5
BolC5t30991H Brassica oleracea HOM05D001111 ORTHO05D000939 4.4e-22 109.8 110 65.5
CSS0033595 Camellia sinensis var. sinensis HOM05D000442 ORTHO05D006868 7.5e-22 109.0 202 39.6
MD05G1281400 Malus domestica HOM05D000442 ORTHO05D006868 7.5e-22 109.0 202 38.6
QL05p055843 Quercus lobata HOM05D000442 ORTHO05D006868 1.7e-21 107.8 212 38.7
Dinv32233 Davidia involucrata HOM05D000442 ORTHO05D006868 2.9e-21 107.1 179 42.5
Dinv05220 Davidia involucrata HOM05D000442 ORTHO05D006868 3.7e-21 106.7 195 40.0
Manes.15G123500 Manihot esculenta HOM05D000442 ORTHO05D006868 3.7e-21 106.7 210 39.0
MD10G1260300 Malus domestica HOM05D000442 ORTHO05D006868 4.9e-21 106.3 200 39.5
Lj2C320G7 Lonicera japonica HOM05D000442 ORTHO05D006868 6.4e-21 105.9 208 38.9
Potri.011G082500 Populus trichocarpa HOM05D000442 ORTHO05D006868 6.4e-21 105.9 194 39.7
Cpa.g.sc17.4 Carica papaya HOM05D000442 ORTHO05D006868 8.3e-21 105.5 194 40.7
Aqoxy1G01680 Aquilegia oxysepala HOM05D000442 ORTHO05D006868 1.1e-20 105.1 177 45.2
RcHm_v2.0_Chr5g0014461 Rosa chinensis HOM05D000442 ORTHO05D006868 1.1e-20 105.1 197 40.6
DCAR_007882 Daucus carota HOM05D000442 ORTHO05D006868 1.4e-20 104.8 197 38.1
THA.LOC104806133 Tarenaya hassleriana HOM05D000442 ORTHO05D006868 1.4e-20 104.8 179 41.9
TWI73G0723 Tripterygium wilfordii HOM05D000442 ORTHO05D006868 1.4e-20 104.8 194 39.7
FAN11G3325 Fragaria x ananassa HOM05D000442 ORTHO05D006868 1.8e-20 104.4 196 40.3
Gohir.A09G077100 Gossypium hirsutum HOM05D000442 ORTHO05D006868 2.4e-20 104.0 194 39.7
Lalb_Chr20g0117831 Lupinus albus HOM05D000442 ORTHO05D006868 2.4e-20 104.0 191 40.3
BcaB07g32354 Brassica carinata HOM05D001111 ORTHO05D000939 3.2e-20 103.6 122 59.8
HanXRQChr16g0525791 Helianthus annuus HOM05D000442 ORTHO05D006868 3.2e-20 103.6 190 41.6
Gohir.D09G077100 Gossypium hirsutum HOM05D000442 ORTHO05D006868 4.1e-20 103.2 194 39.7
Gorai.006G092200 Gossypium raimondii HOM05D000442 ORTHO05D006868 4.1e-20 103.2 196 39.8
Potri.004G066100 Populus trichocarpa HOM05D000442 ORTHO05D006868 4.1e-20 103.2 212 38.2
Solyc08g048500.3 Solanum lycopersicum HOM05D000442 ORTHO05D006868 5.4e-20 102.8 185 40.5
Sopen08g010860 Solanum pennellii HOM05D000442 ORTHO05D006868 5.4e-20 102.8 189 39.7
GSVIVG01021523001 Vitis vinifera HOM05D000442 ORTHO05D006868 5.4e-20 102.8 189 38.6
FvH4_3g05250 Fragaria vesca HOM05D000442 ORTHO05D006868 7.0e-20 102.4 196 39.8
BraA09t39602Z Brassica rapa HOM05D001111 ORTHO05D000939 1.6e-19 101.3 117 58.1
CDE01G0362 Ceratophyllum demersum HOM05D000442 ORTHO05D006868 1.6e-19 101.3 191 36.1
CANSAT35G1070 Cannabis sativa HOM05D000442 ORTHO05D006868 2.0e-19 100.9 196 39.3
Duzib160G0470 Durio zibethinus HOM05D000442 ORTHO05D006868 2.0e-19 100.9 194 40.2
FAN21G1137 Fragaria x ananassa HOM05D000442 ORTHO05D006868 2.7e-19 100.5 179 41.3
Eucgr.E02424 Eucalyptus grandis HOM05D000442 ORTHO05D006868 3.5e-19 100.1 175 41.1
arahy.Tifrunner.gnm1.ann1.91ARJF Arachis hypogaea HOM05D000442 ORTHO05D006868 4.6e-19 99.8 180 41.7
arahy.Tifrunner.gnm1.ann1.IEW56P Arachis hypogaea HOM05D000442 ORTHO05D006868 4.6e-19 99.8 180 41.7
MBI02_g03073_MAGBIO Magnolia biondii HOM05D000442 ORTHO05D006868 4.6e-19 99.8 193 41.5
Nitab4.5_0006038g0010 Nicotiana tabacum HOM05D000442 ORTHO05D006868 4.6e-19 99.8 177 39.5
PGSC0003DMG400029870 Solanum tuberosum HOM05D000442 ORTHO05D006868 5.9e-19 99.4 180 39.4
VMungo0251G0691 Vigna mungo HOM05D000442 ORTHO05D006868 5.9e-19 99.4 219 37.4
A09p41100 Brassica napus HOM05D001111 ORTHO05D000939 7.8e-19 99.0 117 58.1
FAN25G1399 Fragaria x ananassa HOM05D000442 ORTHO05D006868 7.8e-19 99.0 196 39.3
FAN25G3287 Fragaria x ananassa HOM05D000442 ORTHO05D006868 7.8e-19 99.0 196 39.3
Thecc.06G147900 Theobroma cacao HOM05D000442 ORTHO05D006868 7.8e-19 99.0 196 38.8
Phvul.002G180500 Phaseolus vulgaris HOM05D000442 ORTHO05D006868 1.0e-18 98.6 219 37.9
FAN16G2020 Fragaria x ananassa HOM05D000442 ORTHO05D006868 1.7e-18 97.8 196 38.8
Lalb_Chr15g0086741 Lupinus albus HOM05D000442 ORTHO05D006868 2.3e-18 97.4 182 39.0
Nitab4.5_0005094g0030 Nicotiana tabacum HOM05D000442 ORTHO05D006868 6.6e-18 95.9 179 39.1
PGR083G2694 Punica granatum HOM05D000442 ORTHO05D006868 6.6e-18 95.9 204 38.7
Ca_00528_v3 Cicer arietinum L. HOM05D000442 ORTHO05D006868 8.6e-18 95.5 179 42.5
Lj6g0008133 Lotus japonicus HOM05D000442 ORTHO05D006868 1.1e-17 95.1 187 37.4
COL.COLO4_31040 Corchorus olitorius HOM05D000442 ORTHO05D006868 1.5e-17 94.7 212 34.0
MBI18_g11241_MAGBIO Magnolia biondii HOM05D000442 ORTHO05D006868 1.5e-17 94.7 177 41.2
Rhsim13G0115500 Rhododendron simsii HOM05D000442 ORTHO05D006868 1.5e-17 94.7 177 39.5
vmacro03341 Vaccinium macrocarpon HOM05D000442 ORTHO05D006868 1.5e-17 94.7 178 40.4
CAN.G42.15 Capsicum annuum HOM05D000442 ORTHO05D006868 1.9e-17 94.4 179 39.1
ECA234G2123 Erigeron canadensis HOM05D000442 ORTHO05D006868 1.9e-17 94.4 197 40.1
Hma1.2p1_0185F.1_g081430 Hydrangea macrophylla HOM05D000442 ORTHO05D006868 1.9e-17 94.4 194 38.7
PSO675G4648 Papaver somniferum HOM05D000442 ORTHO05D006868 2.5e-17 94.0 190 38.9
Psat0s356g0040 Pisum sativum HOM05D000442 ORTHO05D006868 2.5e-17 94.0 179 40.8
PSO541G1231 Papaver somniferum HOM05D000442 ORTHO05D006868 3.3e-17 93.6 190 39.5
CDE12G0527 Ceratophyllum demersum HOM05D000442 ORTHO05D006868 4.3e-17 93.2 192 34.4
Glyma.08G097700 Glycine max HOM05D000442 ORTHO05D006868 4.3e-17 93.2 190 36.8
Hma1.2p1_0020F.1_g014175 Hydrangea macrophylla HOM05D000442 ORTHO05D006868 4.3e-17 93.2 170 41.2
Lj4g0002628 Lotus japonicus HOM05D000442 ORTHO05D006868 5.6e-17 92.8 214 36.9
Actinidia39585 Actinidia chinensis HOM05D000442 ORTHO05D006868 7.3e-17 92.4 190 36.8
Oeu031181.1 Olea europaea HOM05D000442 ORTHO05D006868 7.3e-17 92.4 184 38.0
Medtr2g019090 Medicago truncatula HOM05D000442 ORTHO05D006868 1.6e-16 91.3 177 38.4
HPP92_005871 Vanilla planifolia HOM05D000442 ORTHO05D006868 1.6e-16 91.3 194 37.6
BcaC07g38299 Brassica carinata HOM05D000442 ORTHO05D019979 2.1e-16 90.9 88 63.6
AUR62024615 Chenopodium quinoa HOM05D000442 ORTHO05D006868 2.1e-16 90.9 175 36.0
Peaxi162Scf00317g00017 Petunia axillaris HOM05D000442 ORTHO05D006868 2.1e-16 90.9 181 37.0
TPR.G26226 Trifolium pratense HOM05D000442 ORTHO05D006868 2.1e-16 90.9 171 39.2
EL10As5g23566 Beta vulgaris HOM05D000442 ORTHO05D006868 3.6e-16 90.1 204 33.8
Carub.0007s2290 Capsella rubella HOM05D000442 ORTHO05D006868 3.6e-16 90.1 116 53.4
Cc00_g05750 Coffea canephora HOM05D000442 ORTHO05D006868 4.7e-16 89.7 194 35.6
Thhalv10027583m.g Eutrema salsugineum HOM05D000442 ORTHO05D006868 4.7e-16 89.7 144 44.4
Lsat_1_v5_gn_4_29701 Lactuca sativa HOM05D000442 ORTHO05D006868 4.7e-16 89.7 190 40.0
C03p43830 Brassica napus HOM05D000209 ORTHO05D000129 6.2e-16 89.4 168 41.1
ClCG01G024740 Citrullus lanatus HOM05D000442 ORTHO05D006868 6.2e-16 89.4 191 38.2
Psat7g081200 Pisum sativum HOM05D000442 ORTHO05D006868 6.2e-16 89.4 176 37.5
MSTRG.16254 Avicennia marina HOM05D000442 ORTHO05D006868 8.0e-16 89.0 186 38.7
BolC3t16651H Brassica oleracea HOM05D000209 ORTHO05D000129 1.8e-15 87.8 168 41.7
AUR62011772 Chenopodium quinoa HOM05D000442 ORTHO05D006868 3.1e-15 87.0 178 35.4
Migut.M00894 Erythranthe guttata HOM05D000442 ORTHO05D006868 4.0e-15 86.7 194 35.1
SGA_v2.0_scaffold1G00194 Striga asiatica HOM05D000442 ORTHO05D006868 4.0e-15 86.7 224 36.6
SalBow8G4075 Salvia bowleyana HOM05D000442 ORTHO05D006868 5.2e-15 86.3 170 40.0
Hund09657 Selenicereus undatus HOM05D000442 ORTHO05D006868 5.2e-15 86.3 200 34.5
CsaV3_6G051840 Cucumis sativus L. HOM05D000442 ORTHO05D006868 6.8e-15 85.9 190 38.9
BraA03t13328Z Brassica rapa HOM05D008492 ORTHO05D019979 8.9e-15 85.5 86 60.5
Oeu034131.1 Olea europaea HOM05D000442 ORTHO05D006868 1.5e-14 84.7 172 37.8
Sp1g21110 Schrenkiella parvula HOM05D001111 ORTHO05D000939 2.6e-14 84.0 120 50.0
TPR.G13305 Trifolium pratense HOM05D000442 ORTHO05D006868 4.4e-14 83.2 199 33.2
Thhalv10008273m.g Eutrema salsugineum HOM05D001111 ORTHO05D000939 5.8e-14 82.8 122 50.8
MSTRG.7500 Avicennia marina HOM05D000442 ORTHO05D006868 7.5e-14 82.4 187 35.8
Sed0026453 Sechium edule HOM05D000442 ORTHO05D006868 7.5e-14 82.4 211 34.6
Ah.02g112480 Amaranthus hybridus HOM05D000442 ORTHO05D006868 1.3e-13 81.6 175 35.4
Sed0000914 Sechium edule HOM05D000442 ORTHO05D006868 1.3e-13 81.6 195 36.4
unitig_37.g12096 Utricularia gibba HOM05D000442 ORTHO05D006868 1.7e-13 81.3 178 34.8
Glyma.05G141800 Glycine max HOM05D000442 ORTHO05D006868 8.3e-13 79.0 101 47.5
HanXRQChr17g0557011 Helianthus annuus HOM05D000442 ORTHO05D006868 1.4e-12 78.2 185 35.1
Sc17g0000310 Simmondsia chinensis HOM05D000442 ORTHO05D006868 1.4e-12 78.2 177 37.3
ATR1098G152 Amborella trichopoda HOM05D000442 ORTHO05D006868 4.1e-12 76.6 192 34.4
MELO3C007123.2 Cucumis melo HOM05D000442 ORTHO05D006868 3.5e-11 73.6 183 36.6
AT1G23710 Arabidopsis thaliana HOM05D001111 ORTHO05D000939 3.0e-10 70.5 110 49.1
BcaC01g06889 Brassica carinata HOM05D000209 ORTHO05D000129 3.9e-10 70.1 41 82.9
CARHR024110 Cardamine hirsuta HOM05D001111 ORTHO05D000939 5.0e-10 69.7 141 42.6
Lj1C1172T8 Lonicera japonica HOM05D000442 ORTHO05D006868 5.0e-10 69.7 80 50.0
Zm00001eb413550 Zea mays HOM05D000442 ORTHO05D006868 1.1e-09 68.6 201 32.8
Carub.0001s2323 Capsella rubella HOM05D001111 ORTHO05D000939 4.3e-09 66.6 165 37.0
arahy.Tifrunner.gnm1.ann1.L0M7VI Arachis hypogaea HOM05D000442 ORTHO05D006868 5.6e-09 66.2 116 43.1
AL1G37460 Arabidopsis lyrata HOM05D001111 ORTHO05D000939 4.0e-07 60.1 110 45.5


User provided reference genes

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