Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 0.0e+00 1083.9 658 100.0
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 6.3e-272 940.6 660 91.1
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 9.2e-231 803.9 658 79.5
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 7.9e-190 667.9 658 71.1
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 4.2e-167 592.4 678 62.5
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 2.2e-147 526.9 662 56.0
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 5.9e-145 518.8 653 58.7
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 1.6e-142 510.8 670 60.6
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 9.2e-114 415.2 673 50.1
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 4.0e-101 373.2 683 44.5
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 8.9e-85 318.9 687 40.6
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 2.8e-46 191.0 694 34.6
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 2.5e-42 177.9 676 32.7
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.2e-42 177.6 698 28.9
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.2e-42 177.6 698 28.9
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 3.6e-41 174.1 726 32.4
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 7.9e-41 172.9 163 81.6
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.4e-40 172.2 714 29.1
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 4.1e-37 160.6 725 29.4
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 5.3e-37 160.2 729 30.3
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.5e-36 158.7 685 30.1
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 4.5e-36 157.1 693 30.7
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 7.7e-36 156.4 631 32.8
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 7.7e-36 156.4 706 31.2
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.0e-35 156.0 562 35.4
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 5.0e-35 153.7 565 35.2
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 5.0e-35 153.7 698 30.7
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.1e-34 152.5 562 34.5
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 2.7e-33 147.9 695 28.3
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.4e-32 145.6 690 26.4
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 3.9e-32 144.1 685 29.8
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 3.9e-32 144.1 601 29.3
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 5.2e-32 143.7 694 32.0
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 6.7e-32 143.3 687 30.9
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 6.7e-32 143.3 667 31.8
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.1e-31 142.5 673 27.9
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.5e-31 142.1 163 48.5
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 2.6e-31 141.4 708 31.2
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 3.3e-31 141.0 569 34.3
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 4.4e-31 140.6 679 27.8
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 1.3e-30 139.0 576 27.3
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 2.8e-30 137.9 165 45.5
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 8.2e-30 136.3 563 28.8
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.1e-29 136.0 762 25.6
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 2.4e-29 134.8 566 34.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 3.1e-29 134.4 684 27.5
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 7.0e-29 133.3 616 26.8
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 4.5e-28 130.6 696 27.2
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.7e-27 128.6 592 35.0
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.9e-27 127.9 659 30.2
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 3.2e-26 124.4 166 51.8
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 4.2e-26 124.0 166 42.8
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 4.2e-26 124.0 165 43.0
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 7.2e-26 123.2 213 36.6
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 9.4e-26 122.9 667 27.6
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 2.1e-25 121.7 166 43.4
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.7e-25 121.3 656 26.4
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 6.1e-25 120.2 164 44.5
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.0e-24 119.4 694 29.4
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 1.0e-24 119.4 159 42.1
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 2.3e-24 118.2 162 63.6
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 2.3e-24 118.2 382 35.1
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 2.3e-24 118.2 165 53.3
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 2.3e-24 118.2 652 30.5
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 4.0e-24 117.5 159 42.1
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 5.2e-24 117.1 213 37.6
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 5.2e-24 117.1 164 55.5
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 5.2e-24 117.1 576 28.5
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 8.8e-24 116.3 580 29.7
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.5e-23 115.5 179 53.6
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 2.0e-23 115.2 177 40.7
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 2.0e-23 115.2 576 32.3
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 7.5e-23 113.2 742 24.4
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 1.3e-22 112.5 674 31.0
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.7e-22 112.1 173 41.0
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.2e-22 111.7 580 34.5
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 2.2e-22 111.7 168 47.6
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 2.8e-22 111.3 581 34.3
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.7e-22 110.9 86 64.0
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.7e-22 110.9 178 42.1
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 3.7e-22 110.9 669 27.4
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 4.8e-22 110.5 529 27.0
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 4.8e-22 110.5 201 35.3
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 4.8e-22 110.5 239 45.6
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 6.3e-22 110.2 667 28.8
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 6.3e-22 110.2 86 62.8
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.1e-21 109.4 86 62.8
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 1.8e-21 108.6 164 44.5
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 2.4e-21 108.2 528 25.9
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 4.1e-21 107.5 410 34.9
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 7.0e-21 106.7 675 29.9
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 7.0e-21 106.7 670 28.2
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 7.0e-21 106.7 164 40.2
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.6e-20 105.5 401 29.2
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.6e-20 105.5 86 60.5
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.6e-20 105.5 170 48.8
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.0e-20 105.1 166 40.4
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 3.5e-20 104.4 86 59.3
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.5e-20 104.4 582 33.3
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 4.5e-20 104.0 86 60.5
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 5.9e-20 103.6 719 30.9
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 1.0e-19 102.8 167 57.5
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.0e-19 102.8 581 32.0
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 1.0e-19 102.8 86 58.1
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 1.3e-19 102.4 536 31.3
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.3e-19 102.4 303 32.0
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 1.7e-19 102.1 166 41.0
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 2.2e-19 101.7 166 50.0
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 2.9e-19 101.3 68 72.1
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 3.8e-19 100.9 669 27.5
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 5.0e-19 100.5 215 36.3
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 5.0e-19 100.5 159 37.1
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 6.5e-19 100.1 179 35.2
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-18 99.4 87 56.3
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.1e-18 99.4 520 24.8
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.9e-18 98.6 586 33.3
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 2.5e-18 98.2 760 24.3
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 2.5e-18 98.2 167 40.7
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.2e-18 97.8 86 55.8
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 3.2e-18 97.8 674 26.4
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 4.2e-18 97.4 175 51.4
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 5.5e-18 97.1 163 44.8
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.2e-18 96.7 86 57.0
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 7.2e-18 96.7 163 36.2
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 9.4e-18 96.3 85 60.0
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.2e-17 95.9 86 57.0
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 3.6e-17 94.4 86 55.8
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 4.7e-17 94.0 566 25.4
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 8.0e-17 93.2 86 53.5
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 1.0e-16 92.8 86 55.8
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.8e-16 92.0 411 33.3
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 2.3e-16 91.7 226 36.3
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.2e-15 89.4 160 41.2
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.5e-15 89.0 555 28.8
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 7.5e-15 86.7 167 48.5
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 2.2e-14 85.1 154 37.0
CARHR061930 Cardamine hirsuta HOM05D005042 ORTHO05D006080 7.0e-13 80.1 116 62.1
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.0e-12 78.6 140 37.1
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 1.1e-10 72.8 570 25.6
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 7.2e-10 70.1 546 26.9
SMO361G0045 Selaginella moellendorffii HOM05D005042 ORTHO05D006080 4.9e-06 57.4 78 39.7


User provided reference genes

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