Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 9.7e-124 446.8 225 100.0
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 7.0e-122 440.7 225 99.6
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 2.4e-114 415.6 225 94.2
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 2.0e-113 412.5 225 93.8
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 2.6e-100 369.0 230 87.4
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 9.8e-100 367.1 228 83.8
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 2.9e-99 365.5 228 84.2
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 4.1e-98 361.7 228 84.2
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.0e-96 357.1 228 83.3
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 5.0e-96 354.8 229 83.0
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 7.3e-95 350.9 228 81.1
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 1.3e-91 340.1 227 78.9
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 6.4e-91 337.8 225 78.7
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 8.3e-91 337.4 227 78.9
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 9.5e-87 323.9 218 78.4
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.6e-81 306.6 226 72.1
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 1.9e-79 299.7 194 83.0
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 4.0e-77 292.0 188 82.4
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 1.2e-73 280.4 227 66.5
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 2.7e-73 279.3 229 65.5
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 3.5e-73 278.9 227 68.3
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 3.5e-73 278.9 226 65.0
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.0e-72 277.3 228 66.2
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.0e-72 277.3 228 66.2
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 6.6e-72 274.6 229 66.4
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 2.5e-71 272.7 230 65.2
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 5.6e-71 271.6 228 65.4
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.1e-70 269.6 229 63.3
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 4.7e-70 268.5 232 64.2
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 6.2e-70 268.1 226 64.6
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.4e-69 266.9 230 64.3
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 1.8e-69 266.5 229 62.9
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.4e-69 266.2 226 64.6
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 6.8e-69 264.6 226 64.6
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-68 263.8 226 64.2
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 4.4e-68 261.9 230 63.5
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 5.8e-68 261.5 230 63.5
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 9.9e-68 260.8 229 61.1
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 9.9e-68 260.8 233 63.5
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 1.7e-67 260.0 230 62.6
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.7e-67 260.0 226 64.2
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.2e-67 259.6 230 63.0
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.9e-67 259.2 229 61.1
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 3.8e-67 258.8 228 66.2
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 6.4e-67 258.1 228 63.2
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 1.9e-66 256.5 228 62.7
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 3.2e-66 255.8 233 60.1
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 4.2e-66 255.4 227 62.1
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 5.4e-66 255.0 229 62.0
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 9.3e-66 254.2 233 61.8
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 4.6e-65 251.9 229 61.6
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.0e-65 251.5 218 63.8
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 6.0e-65 251.5 232 61.2
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 7.8e-65 251.1 231 61.0
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 1.0e-64 250.8 231 61.5
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 1.0e-64 250.8 231 61.9
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.3e-64 250.4 227 60.4
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.3e-64 250.4 237 60.3
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 2.3e-64 249.6 203 68.0
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 3.9e-64 248.8 228 59.2
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 5.1e-64 248.4 259 56.0
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 6.6e-64 248.1 227 61.2
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 8.7e-64 247.7 232 60.8
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.1e-63 247.3 197 65.5
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.9e-63 246.5 229 61.1
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 2.5e-63 246.1 221 60.2
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.3e-63 245.7 226 60.2
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 4.3e-63 245.4 228 60.5
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 5.6e-63 245.0 228 61.4
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 9.6e-63 244.2 229 59.0
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 1.3e-62 243.8 229 60.3
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.6e-62 243.4 230 61.7
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 2.1e-62 243.0 229 59.0
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 2.1e-62 243.0 228 58.8
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 3.6e-62 242.3 231 61.0
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 6.2e-62 241.5 232 59.5
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 6.2e-62 241.5 229 59.4
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 1.1e-61 240.7 228 58.8
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.8e-61 240.0 234 58.5
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 4.0e-61 238.8 230 60.4
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 6.9e-61 238.0 278 50.4
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 9.0e-61 237.7 229 59.8
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 1.5e-60 236.9 229 58.5
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 2.0e-60 236.5 155 74.8
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 2.0e-60 236.5 232 58.6
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 5.8e-60 235.0 230 58.3
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 1.3e-59 233.8 238 56.7
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.3e-59 233.8 230 56.5
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.2e-59 233.0 156 73.1
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 8.4e-59 231.1 231 56.7
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.1e-58 230.7 229 55.0
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.1e-58 230.7 230 56.1
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 3.2e-58 229.2 232 57.8
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 4.2e-58 228.8 200 63.0
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 5.4e-58 228.4 231 57.1
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 5.4e-58 228.4 226 56.6
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 7.1e-58 228.0 155 71.6
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 9.3e-58 227.6 201 60.2
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.6e-57 226.9 230 57.0
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.1e-57 226.5 157 74.5
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 2.7e-57 226.1 232 56.9
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 2.7e-57 226.1 226 56.6
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.0e-56 224.2 231 54.5
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.3e-56 223.8 211 59.2
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.3e-56 223.8 152 73.7
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.7e-56 223.4 229 56.8
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 2.3e-56 223.0 230 56.5
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 3.0e-56 222.6 227 57.3
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 3.0e-56 222.6 227 57.3
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 8.7e-56 221.1 249 53.0
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 1.1e-55 220.7 261 52.1
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.9e-55 219.9 231 54.1
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 2.5e-55 219.5 156 72.4
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.8e-54 216.1 227 54.6
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 6.2e-54 214.9 207 58.0
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.8e-53 213.4 155 67.7
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 4.0e-53 212.2 233 54.1
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 5.3e-53 211.8 214 58.4
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 3.4e-52 209.1 247 52.6
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.9e-51 206.1 231 52.8
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.9e-51 206.1 231 52.8
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 3.8e-51 205.7 216 56.0
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 7.1e-50 201.4 152 70.4
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 4.6e-49 198.7 228 50.4
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 6.7e-48 194.9 150 68.0
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.1e-47 194.1 154 64.9
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 5.6e-47 191.8 232 51.7
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.3e-46 190.7 210 53.3
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 2.1e-46 189.9 213 51.6
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 3.7e-46 189.1 145 65.5
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 3.1e-45 186.0 232 51.3
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 2.6e-44 183.0 132 70.5
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 7.6e-44 181.4 154 64.3
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 4.9e-43 178.7 145 66.9
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 6.5e-43 178.3 155 62.6
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 9.3e-42 174.5 229 47.6
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 3.5e-41 172.6 153 61.4
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 6.0e-41 171.8 109 78.9
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 1.2e-36 157.5 125 65.6
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 8.4e-35 151.4 100 77.0
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.6e-33 147.1 153 56.9
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 2.1e-33 146.7 128 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.3e-32 143.3 132 59.1
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 8.7e-32 141.4 131 60.3
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.3e-30 137.5 99 66.7
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 8.2e-30 134.8 155 54.8
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.4e-29 134.0 103 68.0
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.4e-29 133.3 71 95.8
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 9.0e-29 131.3 132 56.1
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 4.2e-26 122.5 93 72.0
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 4.2e-26 122.5 93 72.0
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 9.7e-23 111.3 64 89.1
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.8e-21 107.1 75 68.0
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.6e-15 86.7 68 58.8
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 3.3e-15 86.3 103 43.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 4.5e-12 75.9 94 40.4
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 8.5e-11 71.6 118 36.4
BcaC03g15079 Brassica carinata HOM05D004550 ORTHO05D005340 5.7e-07 58.9 38 78.9


User provided reference genes

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