Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p40170 Brassica napus HOM05D001367 ORTHO05D027497 9.6e-43 176.4 88 100.0
BolC6t36535H Brassica oleracea HOM05D001367 ORTHO05D027497 2.9e-31 138.3 80 87.5
C06p13650 Brassica napus HOM05D001367 ORTHO05D027497 5.3e-17 90.9 53 86.8
BcaNung05280 Brassica carinata HOM05D001367 ORTHO05D005289 7.2e-14 80.5 67 70.1
A02p44550 Brassica napus HOM05D001367 ORTHO05D005289 4.6e-13 77.8 51 80.4
BolC2t12553H Brassica oleracea HOM05D001367 ORTHO05D005289 4.6e-13 77.8 52 78.8
BraA02t09371Z Brassica rapa HOM05D001367 ORTHO05D005289 4.6e-13 77.8 51 80.4
C02p64950 Brassica napus HOM05D001367 ORTHO05D005289 6.1e-13 77.4 52 76.9
Carub.0008s2813 Capsella rubella HOM05D001367 ORTHO05D005289 6.1e-13 77.4 52 76.9
BcaB03g12408 Brassica carinata HOM05D001367 ORTHO05D027497 1.0e-12 76.6 51 80.4
AT5G66380 Arabidopsis thaliana HOM05D001367 ORTHO05D005289 1.4e-12 76.3 52 75.0
BcaNung04506 Brassica carinata HOM05D001367 ORTHO05D005289 1.8e-12 75.9 52 76.9
A09p10060 Brassica napus HOM05D001367 ORTHO05D005289 1.8e-12 75.9 52 76.9
C09p11920 Brassica napus HOM05D001367 ORTHO05D005289 1.8e-12 75.9 52 76.9
BolC9t54080H Brassica oleracea HOM05D001367 ORTHO05D005289 1.8e-12 75.9 52 76.9
BraA09t36649Z Brassica rapa HOM05D001367 ORTHO05D005289 1.8e-12 75.9 52 76.9
BcaC03g18416 Brassica carinata HOM05D001367 ORTHO05D005289 2.3e-12 75.5 45 84.4
BcaC03g18422 Brassica carinata HOM05D001367 ORTHO05D005289 2.3e-12 75.5 45 84.4
CARHR281340 Cardamine hirsuta HOM05D001367 ORTHO05D005289 2.3e-12 75.5 52 75.0
Glyma.02G052400 Glycine max HOM05D001367 ORTHO05D005289 2.3e-12 75.5 45 82.2
Sp2g30400 Schrenkiella parvula HOM05D001367 ORTHO05D005289 3.0e-12 75.1 52 75.0
arahy.Tifrunner.gnm1.ann1.GBA1RV Arachis hypogaea HOM05D001367 ORTHO05D005289 3.9e-12 74.7 45 80.0
arahy.Tifrunner.gnm1.ann1.VM8KEN Arachis hypogaea HOM05D001367 ORTHO05D005289 3.9e-12 74.7 45 80.0
CiPaw.08G137700 Carya illinoinensis HOM05D001367 ORTHO05D005289 5.1e-12 74.3 57 68.4
Ca_22345_v3 Cicer arietinum L. HOM05D001367 ORTHO05D005289 6.7e-12 73.9 53 69.8
Medtr8g076760 Medicago truncatula HOM05D001367 ORTHO05D005289 6.7e-12 73.9 45 80.0
Thhalv10004659m.g Eutrema salsugineum HOM05D001367 ORTHO05D005289 8.8e-12 73.6 53 77.4
Potri.007G019000 Populus trichocarpa HOM05D001367 ORTHO05D005289 8.8e-12 73.6 54 70.4
ClCG01G019970 Citrullus lanatus HOM05D001367 ORTHO05D005289 1.5e-11 72.8 50 76.0
Haze_03839 Corylus avellana HOM05D001367 ORTHO05D005289 1.5e-11 72.8 48 75.0
MELO3C001466.2 Cucumis melo HOM05D001367 ORTHO05D005289 1.5e-11 72.8 50 76.0
Dinv40033 Davidia involucrata HOM05D001367 ORTHO05D005289 2.0e-11 72.4 45 77.8
Sed0026853 Sechium edule HOM05D001367 ORTHO05D005289 2.0e-11 72.4 45 77.8
EL10As8g23884 Beta vulgaris HOM05D001367 ORTHO05D005289 2.5e-11 72.0 61 60.7
Lalb_Chr05g0229971 Lupinus albus HOM05D001367 ORTHO05D005289 3.3e-11 71.6 53 67.9
Psat4g096400 Pisum sativum HOM05D001367 ORTHO05D005289 3.3e-11 71.6 45 77.8
AL8G45150 Arabidopsis lyrata HOM05D001367 ORTHO05D005289 4.3e-11 71.2 53 73.6
Eucgr.D01095 Eucalyptus grandis HOM05D001367 ORTHO05D005289 4.3e-11 71.2 53 69.8
Phvul.003G257600 Phaseolus vulgaris HOM05D001367 ORTHO05D005289 4.3e-11 71.2 45 75.6
TAR625G0100 Trochodendron aralioides HOM05D001367 ORTHO05D005289 4.3e-11 71.2 46 80.4
Aa31LG5G12800 Aethionema arabicum HOM05D001367 ORTHO05D005289 5.7e-11 70.9 53 73.6
COL.COLO4_21999 Corchorus olitorius HOM05D001367 ORTHO05D005289 5.7e-11 70.9 45 73.3
Lj4g0019915 Lotus japonicus HOM05D001367 ORTHO05D005289 5.7e-11 70.9 45 73.3
Prupe.7G162200 Prunus persica HOM05D001367 ORTHO05D005289 5.7e-11 70.9 54 64.8
CsaV3_6G046730 Cucumis sativus L. HOM05D001367 ORTHO05D005289 7.4e-11 70.5 50 74.0
MD02G1138700 Malus domestica HOM05D001367 ORTHO05D005289 7.4e-11 70.5 54 63.0
THA.LOC104821307 Tarenaya hassleriana HOM05D001367 ORTHO05D005289 7.4e-11 70.5 45 77.8
VMungo0251G3431 Vigna mungo HOM05D001367 ORTHO05D005289 7.4e-11 70.5 45 75.6
RcHm_v2.0_Chr2g0100341 Rosa chinensis HOM05D001367 ORTHO05D005289 9.7e-11 70.1 47 74.5
CSS0029948 Camellia sinensis var. sinensis HOM05D001367 ORTHO05D005289 1.3e-10 69.7 46 73.9
CSS0040366 Camellia sinensis var. sinensis HOM05D001367 ORTHO05D005289 1.3e-10 69.7 46 73.9
Ciclev10026117m.g Citrus clementina HOM05D001367 ORTHO05D005289 1.7e-10 69.3 57 70.2
SGA_v2.0_scaffold102G29914 Striga asiatica HOM05D001367 ORTHO05D005289 1.7e-10 69.3 80 50.0
TPR.G21550 Trifolium pratense HOM05D001367 ORTHO05D005289 2.2e-10 68.9 46 76.1
CANSAT01G0735 Cannabis sativa HOM05D001367 ORTHO05D005289 2.8e-10 68.6 46 80.4
Lj4A210T32 Lonicera japonica HOM05D001367 ORTHO05D005289 2.8e-10 68.6 45 73.3
VMungo0251G3319 Vigna mungo HOM05D001367 ORTHO05D005289 2.8e-10 68.6 46 76.1
FvH4_1g12470 Fragaria vesca HOM05D001367 ORTHO05D005289 3.7e-10 68.2 47 70.2
FAN26G2838 Fragaria x ananassa HOM05D001367 ORTHO05D005289 4.8e-10 67.8 47 68.1
HanXRQChr14g0441441 Helianthus annuus HOM05D001367 ORTHO05D005289 4.8e-10 67.8 47 66.0
Manes.01G140400 Manihot esculenta HOM05D001367 ORTHO05D005289 4.8e-10 67.8 46 78.3
Rhsim08G0123300 Rhododendron simsii HOM05D001367 ORTHO05D005289 4.8e-10 67.8 45 71.1
vmacro17725 Vaccinium macrocarpon HOM05D001367 ORTHO05D005289 4.8e-10 67.8 45 71.1
ECA238G0539 Erigeron canadensis HOM05D001367 ORTHO05D005289 6.3e-10 67.4 50 62.0
Os03g0734700 Oryza sativa ssp. japonica HOM05D001367 ORTHO05D005289 6.3e-10 67.4 46 67.4
QL06p034902 Quercus lobata HOM05D001367 ORTHO05D005289 6.3e-10 67.4 53 67.9
QL10p007477 Quercus lobata HOM05D001367 ORTHO05D005289 6.3e-10 67.4 53 67.9
Cc07_g10110 Coffea canephora HOM05D001367 ORTHO05D005289 8.2e-10 67.0 46 69.6
FAN23G2952 Fragaria x ananassa HOM05D001367 ORTHO05D005289 8.2e-10 67.0 45 71.1
Gohir.D10G091500 Gossypium hirsutum HOM05D001367 ORTHO05D005289 8.2e-10 67.0 52 61.5
Gorai.011G100500 Gossypium raimondii HOM05D001367 ORTHO05D005289 8.2e-10 67.0 54 59.3
Thecc.01G027000 Theobroma cacao HOM05D001367 ORTHO05D005289 8.2e-10 67.0 56 57.1
SalBow8G5134 Salvia bowleyana HOM05D001367 ORTHO05D005289 1.1e-09 66.6 46 63.0
SGA_v2.0_scaffold51G18797 Striga asiatica HOM05D001367 ORTHO05D005289 1.1e-09 66.6 45 68.9
Aa31LG1G14900 Aethionema arabicum HOM05D001367 ORTHO05D005289 1.4e-09 66.2 49 69.4
Duzib264G1017 Durio zibethinus HOM05D001367 ORTHO05D005289 1.4e-09 66.2 53 62.3
Phvul.003G257800 Phaseolus vulgaris HOM05D001367 ORTHO05D005289 1.4e-09 66.2 46 73.9
Actinidia19221 Actinidia chinensis HOM05D001367 ORTHO05D005289 1.8e-09 65.9 45 64.4
Lsat_1_v5_gn_2_78080 Lactuca sativa HOM05D001367 ORTHO05D005289 1.8e-09 65.9 45 66.7
Solyc02g084770.3 Solanum lycopersicum HOM05D001367 ORTHO05D005289 1.8e-09 65.9 48 64.6
Sopen02g029440 Solanum pennellii HOM05D001367 ORTHO05D005289 1.8e-09 65.9 48 64.6
Eucgr.D01096 Eucalyptus grandis HOM05D001367 ORTHO05D005289 2.4e-09 65.5 54 63.0
Solyc02g088770.3 Solanum lycopersicum HOM05D001367 ORTHO05D005289 2.4e-09 65.5 48 64.6
Sopen02g033480 Solanum pennellii HOM05D001367 ORTHO05D005289 2.4e-09 65.5 48 64.6
Zm00001eb215470 Zea mays HOM05D001367 ORTHO05D005289 2.4e-09 65.5 46 63.0
Cpa.g.sc6.183 Carica papaya HOM05D001367 ORTHO05D005289 3.1e-09 65.1 46 71.7
ATR0794G093 Amborella trichopoda HOM05D001367 ORTHO05D005289 5.3e-09 64.3 46 67.4
CAN.G206.221 Capsicum annuum HOM05D001367 ORTHO05D005289 5.3e-09 64.3 46 67.4
MBI11_g07619_MAGBIO Magnolia biondii HOM05D001367 ORTHO05D005289 5.3e-09 64.3 44 72.7
Migut.H02507 Erythranthe guttata HOM05D001367 ORTHO05D005289 6.9e-09 63.9 47 68.1
MSTRG.2494 Avicennia marina HOM05D001367 ORTHO05D005289 1.2e-08 63.2 47 68.1
PSO170G2614 Papaver somniferum HOM05D001367 ORTHO05D005289 1.2e-08 63.2 57 59.6
PSO210G6386 Papaver somniferum HOM05D001367 ORTHO05D005289 1.2e-08 63.2 57 59.6
Glyma.16G132600 Glycine max HOM05D001367 ORTHO05D005289 1.5e-08 62.8 67 55.2
Nn5g29718 Nelumbo nucifera HOM05D001367 ORTHO05D005289 1.5e-08 62.8 48 66.7
PGR102G2174 Punica granatum HOM05D001367 ORTHO05D005289 1.5e-08 62.8 46 71.7
ECA246G2099 Erigeron canadensis HOM05D001367 ORTHO05D005289 2.0e-08 62.4 48 64.6
Lsat_1_v5_gn_3_75020 Lactuca sativa HOM05D001367 ORTHO05D005289 2.0e-08 62.4 49 63.3
DCAR_025976 Daucus carota HOM05D001367 ORTHO05D005289 2.6e-08 62.0 48 68.8
Hma1.2p1_0913F.1_g235990 Hydrangea macrophylla HOM05D001367 ORTHO05D005289 2.6e-08 62.0 46 67.4
Oeu002028.1 Olea europaea HOM05D001367 ORTHO05D005289 2.6e-08 62.0 48 66.7
Nitab4.5_0004708g0060 Nicotiana tabacum HOM05D001367 ORTHO05D005289 3.4e-08 61.6 47 68.1
Pp3c2_22480 Physcomitrium patens HOM05D001367 ORTHO05D005289 3.4e-08 61.6 51 56.9
Gohir.A10G096600 Gossypium hirsutum HOM05D001367 ORTHO05D005289 4.5e-08 61.2 53 58.5
PGSC0003DMG400003534 Solanum tuberosum HOM05D001367 ORTHO05D005289 4.5e-08 61.2 49 63.3
TWI53G1062 Tripterygium wilfordii HOM05D001367 ORTHO05D005289 5.9e-08 60.8 44 72.7
SHI04443 Sapria himalayana HOM05D001367 ORTHO05D005289 7.7e-08 60.5 44 63.6
FAN28G0074 Fragaria x ananassa HOM05D001367 ORTHO05D005289 1.0e-07 60.1 45 68.9
Mapoly0015s0117 Marchantia polymorpha HOM05D001367 ORTHO05D005289 1.0e-07 60.1 49 57.1
HanXRQChr07g0190381 Helianthus annuus HOM05D001367 ORTHO05D005289 1.3e-07 59.7 62 51.6
Atru.chr3.731 Acer truncatum HOM05D001367 ORTHO05D005289 2.2e-07 58.9 45 71.1
GSVIVG01018862001 Vitis vinifera HOM05D001367 ORTHO05D005289 2.2e-07 58.9 46 65.2
Medtr8g076740 Medicago truncatula HOM05D001367 ORTHO05D005289 2.9e-07 58.5 45 60.0
Lj2g0020700 Lotus japonicus HOM05D001367 ORTHO05D005289 3.8e-07 58.2 64 50.0
Sc03g0003240 Simmondsia chinensis HOM05D001367 ORTHO05D005289 3.8e-07 58.2 45 66.7
Aqoxy5G01539 Aquilegia oxysepala HOM05D001367 ORTHO05D005289 8.5e-07 57.0 47 63.8
TPR.G21527 Trifolium pratense HOM05D001367 ORTHO05D005289 1.9e-06 55.8 45 62.2
AagrBONN_evm.TU.Sc2ySwM_228.4465 Anthoceros agrestis HOM05D001367 ORTHO05D005289 2.5e-06 55.5 54 50.0
AagrBONN_evm.TU.Sc2ySwM_290.6 Anthoceros agrestis HOM05D001367 ORTHO05D005289 2.5e-06 55.5 54 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2159 Anthoceros agrestis HOM05D001367 ORTHO05D005289 2.5e-06 55.5 54 50.0
AagrBONN_evm.TU.Sc2ySwM_67.1 Anthoceros agrestis HOM05D001367 ORTHO05D005289 2.5e-06 55.5 54 50.0
AagrBONN_evm.TU.Sc2ySwM_83.1 Anthoceros agrestis HOM05D001367 ORTHO05D005289 2.5e-06 55.5 54 50.0
AagrBONN_evm.TU.Sc2ySwM_83.5 Anthoceros agrestis HOM05D001367 ORTHO05D005289 2.5e-06 55.5 54 50.0
AagrBONN_evm.TU.Sc2ySwM_84.1 Anthoceros agrestis HOM05D001367 ORTHO05D005289 2.5e-06 55.5 54 50.0
CBR_g10915 Chara braunii HOM05D002885 ORTHO05D005289 4.2e-06 54.7 60 48.3
TPR.G21538 Trifolium pratense HOM05D001367 ORTHO05D005289 9.4e-06 53.5 45 57.8


User provided reference genes

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