Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 4.6e-200 701.0 360 100.0
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 4.6e-200 701.0 360 100.0
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 9.9e-195 683.3 360 97.2
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.6e-192 676.0 360 95.6
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 2.7e-192 675.2 360 96.1
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 3.0e-191 671.8 360 95.6
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 6.2e-181 637.5 355 91.8
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.3e-178 629.8 356 88.5
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 1.2e-176 623.2 360 87.5
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 7.9e-176 620.5 356 86.8
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.8e-175 619.4 356 87.1
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.0e-170 603.6 345 87.5
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 2.6e-163 578.9 360 82.2
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 2.8e-149 532.3 361 74.2
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 4.8e-149 531.6 360 73.3
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.5e-147 526.6 360 72.5
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 2.9e-146 522.3 360 72.8
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 2.9e-146 522.3 359 71.3
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 3.8e-146 521.9 363 70.5
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 4.2e-145 518.5 363 70.2
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 5.5e-145 518.1 364 72.0
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.1e-144 516.2 361 70.4
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 2.7e-144 515.8 361 70.4
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 6.1e-144 514.6 362 71.8
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 1.8e-143 513.1 365 70.7
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 3.9e-143 511.9 362 70.2
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 8.8e-143 510.8 369 70.2
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 2.0e-142 509.6 362 71.3
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 2.6e-142 509.2 376 68.4
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 3.3e-142 508.8 362 68.8
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 5.7e-142 508.1 361 70.9
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 5.7e-142 508.1 361 69.5
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 2.8e-141 505.8 362 71.8
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 3.7e-141 505.4 381 69.3
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 4.8e-141 505.0 361 70.6
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 6.3e-141 504.6 357 72.0
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 8.2e-141 504.2 364 71.2
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.1e-140 503.8 360 70.3
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 1.8e-140 503.1 359 70.2
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.2e-139 500.4 371 68.5
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 5.9e-139 498.0 360 69.2
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.7e-138 496.5 366 67.5
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 2.2e-138 496.1 362 69.6
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 2.2e-138 496.1 355 69.9
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 3.8e-138 495.4 333 74.8
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 8.5e-138 494.2 356 69.7
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 8.5e-138 494.2 360 67.5
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 8.5e-138 494.2 360 67.8
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.5e-137 493.4 331 74.9
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 1.9e-137 493.0 384 66.7
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 1.6e-136 490.0 368 68.2
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.6e-136 490.0 363 69.1
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 2.1e-136 489.6 359 70.2
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 3.0e-135 485.7 330 72.7
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 3.9e-135 485.3 364 66.5
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 8.8e-135 484.2 358 69.3
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.5e-134 483.4 356 68.3
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 2.6e-134 482.6 360 67.8
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 2.6e-134 482.6 367 66.8
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.6e-134 482.6 362 68.8
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.7e-133 479.9 360 67.2
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.7e-133 479.9 360 68.1
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.7e-133 479.9 364 67.6
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 2.8e-133 479.2 333 72.4
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.1e-132 477.2 359 68.0
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 4.1e-132 475.3 362 66.9
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 1.0e-130 470.7 262 92.7
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.2e-126 457.2 412 59.7
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 3.7e-125 452.2 364 62.9
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 8.3e-125 451.1 438 58.9
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.8e-124 449.9 364 64.3
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 2.4e-124 449.5 330 67.3
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 4.1e-124 448.7 363 66.4
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 2.7e-123 446.0 258 88.4
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 5.0e-122 441.8 355 63.1
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 8.5e-122 441.0 359 65.2
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 2.3e-119 433.0 357 63.6
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 3.0e-119 432.6 282 74.8
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.0e-119 432.6 358 62.8
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 4.0e-119 432.2 358 61.2
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 3.4e-118 429.1 312 67.6
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.6e-115 420.2 332 66.9
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 2.3e-114 416.4 340 64.4
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 1.6e-112 410.2 353 61.8
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 3.0e-111 406.0 335 63.3
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.3e-109 400.6 359 59.6
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 7.0e-108 394.8 263 73.0
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 8.6e-106 387.9 337 59.1
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 1.9e-105 386.7 264 75.0
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 9.5e-105 384.4 262 74.4
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.6e-104 383.6 367 56.9
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 1.0e-103 380.9 332 57.2
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 4.0e-103 379.0 337 59.9
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 4.4e-102 375.6 270 72.6
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 4.4e-102 375.6 265 73.6
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 1.4e-100 370.5 298 65.1
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 7.8e-99 364.8 271 68.3
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 8.6e-98 361.3 301 60.8
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.8e-95 353.6 272 62.9
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 6.8e-95 351.7 260 70.0
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 2.1e-91 340.1 256 67.2
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 1.0e-90 337.8 355 51.3
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 1.0e-82 311.2 311 53.7
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.1e-81 307.8 207 75.8
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 2.0e-78 297.0 349 46.4
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 2.2e-77 293.5 346 48.0
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.1e-73 281.2 187 75.4
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 3.0e-66 256.5 219 63.0
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 4.0e-63 246.1 188 65.4
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 2.3e-58 230.3 462 35.5
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.2e-51 208.0 379 35.9
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.0e-50 204.9 216 51.4
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 4.5e-46 189.5 144 66.0
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-38 164.9 144 57.6
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.5e-36 157.1 159 56.6
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 4.2e-36 156.4 317 33.1
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.2e-32 144.1 146 53.4
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 5.0e-29 132.9 108 62.0
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.4e-28 131.3 138 55.1
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.5e-28 130.6 96 63.5
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 4.2e-28 129.8 120 50.8
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.6e-25 120.6 91 72.5
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 8.2e-24 115.5 81 67.9
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 1.4e-23 114.8 74 73.0
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 1.8e-23 114.4 330 29.7
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 2.0e-22 110.9 72 72.2
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 6.1e-19 99.4 98 58.2
CARHR058540 Cardamine hirsuta HOM05D006412 ORTHO05D008025 4.0e-10 70.1 75 52.0
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.1e-07 62.0 111 33.3
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 4.1e-07 60.1 175 26.9
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.4e-07 59.7 174 25.9
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 1.2e-06 58.5 143 28.0
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.6e-06 58.2 174 25.3
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 2.0e-06 57.8 147 26.5
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.5e-06 57.0 174 24.7
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 3.5e-06 57.0 150 26.7
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 3.5e-06 57.0 146 28.8
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 7.7e-06 55.8 174 24.7


User provided reference genes

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