Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 5.2e-229 797.3 399 100.0
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 4.6e-225 784.3 401 98.3
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 1.6e-222 775.8 399 97.7
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 5.8e-220 767.3 401 96.3
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 1.6e-217 759.2 401 95.0
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 4.7e-214 747.7 401 94.0
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 5.8e-204 714.1 401 89.8
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 3.8e-203 711.4 396 89.6
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 6.4e-203 710.7 396 90.2
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 1.4e-202 709.5 396 89.1
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 9.6e-199 696.8 396 87.9
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.6e-198 696.0 401 87.8
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 1.8e-184 649.4 396 82.6
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 4.2e-178 628.2 393 79.1
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 8.5e-163 577.4 391 73.9
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 2.3e-160 569.3 391 71.9
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.7e-159 564.7 394 72.1
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.2e-158 562.8 394 72.1
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-157 560.5 394 71.1
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 1.5e-156 556.6 391 71.6
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 3.8e-155 552.0 395 67.8
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.1e-154 550.4 394 70.3
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.9e-154 549.7 391 70.3
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.2e-153 547.0 391 69.8
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.0e-152 543.9 394 69.0
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 1.0e-152 543.9 391 71.1
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 1.4e-152 543.5 395 69.6
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.8e-152 543.1 391 69.8
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 6.7e-152 541.2 394 69.5
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 6.7e-152 541.2 396 66.2
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.7e-150 536.6 394 67.8
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 1.4e-149 533.5 391 69.6
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 4.1e-149 531.9 420 66.0
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 4.1e-149 531.9 395 66.8
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 7.0e-149 531.2 394 67.8
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 7.0e-149 531.2 410 65.9
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 2.0e-148 529.6 419 65.9
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 2.0e-148 529.6 394 67.3
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 2.6e-148 529.3 395 66.6
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 2.6e-148 529.3 394 68.3
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 3.5e-148 528.9 396 66.4
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 3.5e-148 528.9 394 67.8
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 7.7e-148 527.7 395 67.6
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.7e-147 526.6 381 69.8
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 1.5e-146 523.5 391 67.5
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 3.2e-146 522.3 422 63.3
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 5.5e-146 521.5 451 61.0
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 2.1e-145 519.6 398 65.8
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 2.7e-145 519.2 394 65.2
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 3.6e-145 518.8 394 65.5
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 8.0e-145 517.7 391 66.8
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.4e-144 516.9 389 65.8
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 5.2e-144 515.0 396 66.2
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 2.0e-143 513.1 393 66.7
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 2.6e-143 512.7 472 58.3
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 9.7e-143 510.8 394 65.5
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 1.7e-142 510.0 394 65.0
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 8.2e-142 507.7 391 65.5
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 5.3e-141 505.0 391 64.7
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 1.0e-139 500.7 396 62.9
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 2.2e-139 499.6 357 71.1
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.5e-138 496.9 393 62.6
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 3.2e-138 495.7 395 64.1
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 2.1e-137 493.0 399 63.7
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 8.0e-137 491.1 394 62.9
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.4e-136 490.3 394 62.2
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 1.5e-135 486.9 393 62.1
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 2.6e-135 486.1 404 61.9
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 5.7e-135 485.0 395 61.3
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 5.7e-135 485.0 409 59.9
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.3e-134 483.8 428 59.8
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.8e-134 481.9 426 59.4
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.4e-133 480.3 396 62.6
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 2.0e-132 476.5 390 60.8
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 3.5e-132 475.7 368 64.7
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 7.2e-130 468.0 381 62.2
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 4.7e-129 465.3 393 60.3
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 4.7e-129 465.3 393 60.3
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 1.3e-123 447.2 360 64.4
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 1.3e-123 447.2 333 67.3
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 2.3e-123 446.4 395 57.5
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 9.5e-122 441.0 506 49.8
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 3.4e-119 432.6 390 57.7
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.8e-117 426.8 445 54.4
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 3.2e-117 426.0 384 58.9
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 5.6e-114 415.2 435 54.0
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 7.5e-111 404.8 351 57.0
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 4.9e-110 402.1 399 53.9
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 6.2e-105 385.2 316 60.1
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 3.4e-103 379.4 392 53.1
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 2.1e-100 370.2 286 64.7
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 6.0e-100 368.6 297 64.6
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 1.3e-99 367.5 402 51.0
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 4.3e-98 362.5 275 65.1
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.7e-94 349.4 399 46.4
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 8.4e-94 348.2 405 44.7
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.2e-89 334.3 249 69.5
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 4.0e-88 329.3 397 44.6
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 8.9e-88 328.2 305 55.7
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 1.6e-84 317.4 238 68.9
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 3.4e-79 299.7 223 66.4
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 1.1e-74 284.6 486 36.4
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 2.1e-73 280.4 242 59.9
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.4e-72 277.7 368 41.3
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 9.3e-69 265.0 317 43.2
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 7.4e-66 255.4 202 64.9
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 7.4e-58 228.8 139 77.0
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 6.5e-38 162.5 535 26.2
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-37 161.0 119 68.1
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-37 161.0 119 68.1
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-37 161.0 119 68.1
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.2e-37 160.2 119 68.1
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 3.2e-37 160.2 139 63.3
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.2e-37 159.8 119 67.2
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.2e-37 159.8 119 67.2
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.9e-35 153.3 103 70.9
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.4e-34 149.8 103 68.9
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 4.4e-34 149.8 109 67.0
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.7e-34 149.4 100 72.0
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 7.7e-31 139.0 104 60.6
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-28 131.7 174 44.8
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-28 131.7 80 78.8
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.7e-28 130.6 81 75.3
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.0e-26 124.4 70 81.4
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 1.7e-25 121.3 79 70.9
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.6e-23 114.8 65 81.5
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.6e-23 114.8 65 81.5
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.5e-23 113.2 65 80.0
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 5.9e-23 112.8 109 56.0
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 8.5e-22 109.0 113 49.6
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.2e-21 106.7 65 78.5
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-20 105.1 254 33.9
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.7e-20 104.0 65 75.4
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.4e-18 96.7 109 47.7
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 7.5e-18 95.9 71 60.6
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 3.1e-16 90.5 162 40.7
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 2.7e-15 87.4 65 61.5
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.3e-14 85.1 60 68.3
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 4.2e-13 80.1 54 70.4
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.6e-12 78.2 97 40.2
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 1.0e-11 75.5 65 60.0
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 8.3e-09 65.9 32 93.8
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 8.3e-09 65.9 43 69.8
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 2.7e-07 60.8 32 84.4


User provided reference genes

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