Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 5.1e-228 794.3 464 100.0
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 1.8e-209 732.6 433 100.0
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 3.2e-206 721.8 433 99.5
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 3.6e-197 691.8 432 93.8
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 2.0e-195 686.0 439 95.4
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 3.6e-181 638.6 417 92.1
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 7.0e-177 624.4 417 90.6
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 1.2e-171 607.1 438 85.8
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 2.6e-171 605.9 438 85.6
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 2.6e-171 605.9 438 85.6
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 8.3e-170 600.9 436 85.6
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 1.4e-169 600.1 440 85.0
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 5.4e-169 598.2 439 85.0
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 7.0e-169 597.8 439 86.3
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 2.3e-167 592.8 436 83.7
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 2.1e-165 586.3 400 88.8
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 3.7e-162 575.5 398 88.7
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 1.1e-158 563.9 424 83.5
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 1.5e-147 526.9 346 91.9
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 4.8e-141 505.4 414 78.5
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 2.5e-118 429.9 463 63.3
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 1.6e-117 427.2 446 65.5
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 1.1e-116 424.5 453 65.1
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.8e-116 423.7 446 63.5
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 1.5e-115 420.6 444 64.9
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 3.8e-114 416.0 454 62.1
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 5.5e-113 412.1 377 72.1
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 5.5e-113 412.1 458 63.1
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 5.1e-111 405.6 438 64.4
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 6.7e-111 405.2 369 72.4
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 1.1e-110 404.4 374 71.4
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 1.1e-110 404.4 372 71.8
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 1.5e-110 404.1 356 73.9
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 4.3e-110 402.5 452 62.6
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 7.4e-110 401.7 420 66.2
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.6e-109 400.6 356 73.3
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 2.8e-109 399.8 369 69.6
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 3.7e-109 399.4 380 69.2
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.3e-109 398.7 370 70.5
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 1.4e-108 397.5 374 70.6
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 4.1e-108 396.0 375 69.9
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.7e-106 390.6 385 66.5
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 2.2e-106 390.2 367 69.8
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 2.9e-106 389.8 445 61.6
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 2.9e-106 389.8 446 62.1
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 3.8e-106 389.4 375 68.3
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 3.8e-106 389.4 358 69.8
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 6.5e-106 388.7 451 60.1
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 1.1e-105 387.9 358 69.6
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 2.5e-105 386.7 358 69.3
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 3.2e-105 386.3 357 69.2
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 3.2e-105 386.3 369 68.8
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 4.2e-105 386.0 402 65.7
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 5.5e-105 385.6 377 68.2
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 7.2e-105 385.2 359 69.4
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 2.7e-104 383.3 329 75.4
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 2.7e-104 383.3 359 68.8
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 2.7e-104 383.3 433 62.4
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 7.9e-104 381.7 356 68.3
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 7.9e-104 381.7 415 61.0
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 1.4e-103 380.9 361 69.5
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 3.0e-103 379.8 366 68.6
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 5.1e-103 379.0 382 67.3
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 5.1e-103 379.0 357 69.7
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 6.7e-103 378.6 380 67.1
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.1e-102 377.9 425 62.1
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 1.1e-102 377.9 319 73.7
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.5e-102 377.5 382 67.3
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 5.7e-102 375.6 356 69.4
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 9.7e-102 374.8 375 66.9
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 9.7e-102 374.8 461 58.8
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.7e-101 374.0 302 77.2
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 3.7e-101 372.9 355 66.5
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 3.7e-101 372.9 427 57.4
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 6.3e-101 372.1 330 71.5
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 9.1e-100 368.2 373 67.3
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 4.5e-99 365.9 301 75.7
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 4.5e-99 365.9 447 57.3
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 1.9e-97 360.5 308 73.7
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 3.2e-97 359.8 369 65.9
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 7.9e-96 355.1 331 69.2
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 2.3e-95 353.6 321 70.4
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 1.5e-94 350.9 404 63.9
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 2.0e-94 350.5 376 64.4
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 9.7e-94 348.2 367 63.2
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 1.3e-93 347.8 369 63.1
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 2.4e-92 343.6 243 77.4
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 3.1e-92 343.2 359 65.5
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 3.1e-92 343.2 292 67.1
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 3.5e-91 339.7 313 70.6
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 4.5e-91 339.3 355 64.5
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 4.5e-91 339.3 363 62.8
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 8.5e-90 335.1 408 58.3
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.1e-89 334.7 360 63.6
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.1e-89 334.7 308 70.1
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 9.4e-89 331.6 311 68.5
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 1.3e-85 321.2 296 72.0
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 2.0e-83 313.9 243 70.4
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 3.2e-81 306.6 354 63.6
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 4.4e-78 296.2 262 73.3
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 7.0e-76 288.9 360 58.6
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 7.0e-76 288.9 313 64.2
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 5.5e-73 279.3 360 57.5
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 2.3e-63 247.3 183 76.0
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 2.6e-62 243.8 229 65.1
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 2.7e-59 233.8 152 82.2
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 5.4e-52 209.5 327 47.4
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 1.9e-49 201.1 309 46.9
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.1e-48 197.6 319 48.9
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 6.8e-47 192.6 272 56.2
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 9.8e-46 188.7 239 47.3
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 1.2e-43 181.8 118 83.9
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.1e-43 181.0 227 48.0
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 2.3e-42 177.6 273 54.9
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 2.9e-37 160.6 178 64.6
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 9.2e-36 155.6 254 39.0
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 2.1e-35 154.5 111 74.8
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 1.1e-31 142.1 206 43.2
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 2.9e-29 134.0 242 52.5
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.2e-27 128.6 78 88.5
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 9.6e-17 92.4 61 78.7
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 4.8e-16 90.1 152 51.3
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 1.8e-10 71.6 101 48.5


User provided reference genes

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