Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 2.3e-105 385.6 191 100.0
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 1.9e-104 382.5 191 99.0
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 1.9e-104 382.5 191 99.0
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 1.2e-103 379.8 191 99.0
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 6.2e-103 377.5 191 98.4
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 9.8e-101 370.2 191 95.3
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 9.8e-101 370.2 191 95.3
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 2.2e-100 369.0 191 95.3
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 2.2e-100 369.0 191 94.8
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 4.1e-99 364.8 191 92.1
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 7.8e-98 360.5 191 91.1
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 6.6e-97 357.5 191 90.1
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 1.5e-96 356.3 191 92.7
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.9e-96 355.9 191 90.1
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 4.3e-96 354.8 191 89.5
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 9.5e-96 353.6 191 89.0
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 4.7e-95 351.3 192 89.6
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 1.6e-90 336.3 192 85.9
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 3.5e-90 335.1 192 85.9
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 4.6e-90 334.7 191 85.3
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 6.0e-90 334.3 191 83.8
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 7.8e-90 334.0 191 83.8
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 1.7e-89 332.8 191 84.8
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 3.9e-89 331.6 188 84.0
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 5.1e-89 331.3 191 84.3
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 6.6e-89 330.9 191 83.8
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 6.6e-89 330.9 190 85.3
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 6.6e-89 330.9 192 84.4
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 8.6e-89 330.5 191 83.2
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 1.1e-88 330.1 191 82.7
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 1.5e-88 329.7 191 83.2
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 3.3e-88 328.6 191 83.2
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 3.3e-88 328.6 191 82.7
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 3.3e-88 328.6 191 83.8
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 5.6e-88 327.8 191 82.7
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 5.6e-88 327.8 190 83.2
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 7.3e-88 327.4 191 84.8
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 7.3e-88 327.4 191 83.8
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 9.5e-88 327.0 191 83.2
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 9.5e-88 327.0 192 84.4
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 1.2e-87 326.6 191 84.3
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 1.2e-87 326.6 190 83.2
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 1.2e-87 326.6 191 82.2
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 1.6e-87 326.2 191 84.3
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 1.6e-87 326.2 192 82.3
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 2.1e-87 325.9 194 83.0
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 2.8e-87 325.5 190 84.2
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 2.8e-87 325.5 191 83.2
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 3.6e-87 325.1 191 83.2
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 4.7e-87 324.7 192 83.3
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 4.7e-87 324.7 191 83.8
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 4.7e-87 324.7 191 83.8
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 6.2e-87 324.3 191 83.8
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 6.2e-87 324.3 191 83.8
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 6.2e-87 324.3 192 82.8
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 8.1e-87 323.9 191 80.6
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 8.1e-87 323.9 191 84.3
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 1.1e-86 323.6 189 82.0
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 1.8e-86 322.8 191 83.8
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 1.8e-86 322.8 189 82.0
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 1.8e-86 322.8 191 82.7
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 81.2
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 81.7
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 80.6
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 84.3
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 84.3
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 3.1e-86 322.0 191 83.2
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 4.0e-86 321.6 191 81.7
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 4.0e-86 321.6 191 81.2
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 5.2e-86 321.2 191 83.2
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 6.8e-86 320.9 191 82.2
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 8.9e-86 320.5 193 81.3
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.2e-85 320.1 191 82.7
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 1.2e-85 320.1 191 82.2
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.5e-85 319.7 191 82.7
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 1.5e-85 319.7 191 83.2
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 79.6
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 81.7
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 81.7
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 3.4e-85 318.5 187 83.4
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 3.4e-85 318.5 191 79.1
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 4.4e-85 318.2 192 82.8
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 4.4e-85 318.2 191 81.2
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 5.8e-85 317.8 191 82.2
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 7.6e-85 317.4 193 78.2
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 7.6e-85 317.4 191 80.6
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 9.9e-85 317.0 191 81.7
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.3e-84 316.6 191 80.6
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 1.7e-84 316.2 191 80.6
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 2.9e-84 315.5 191 79.6
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 6.4e-84 314.3 191 79.6
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 6.4e-84 314.3 191 79.1
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 8.4e-84 313.9 191 77.5
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 8.4e-84 313.9 194 78.9
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 1.9e-83 312.8 191 81.2
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 2.4e-83 312.4 194 78.4
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 7.1e-83 310.8 191 78.5
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 2.7e-82 308.9 191 79.1
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 2.7e-82 308.9 188 78.7
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 6.0e-82 307.8 191 77.0
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 6.0e-82 307.8 192 76.6
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 3.0e-81 305.4 190 76.8
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 3.0e-81 305.4 158 94.3
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 3.9e-81 305.1 191 79.6
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 3.3e-80 302.0 180 83.9
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 3.6e-79 298.5 191 74.3
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.8e-78 296.2 191 73.8
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 6.2e-71 271.2 191 67.5
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 1.4e-67 260.0 157 79.6
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.7e-66 255.8 188 62.8
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 3.0e-65 252.3 158 78.5
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 4.3e-64 248.4 191 62.8
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.6e-63 246.5 191 61.8
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 1.2e-61 240.4 148 81.8
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 8.4e-60 234.2 191 59.7
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 3.9e-57 225.3 149 75.2
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 7.4e-56 221.1 185 55.7
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 6.2e-55 218.0 185 54.6
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 2.9e-52 209.1 149 69.1
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 3.8e-52 208.8 189 55.6
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.5e-51 206.1 192 49.0
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 7.4e-48 194.5 189 50.8
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 3.1e-46 189.1 182 54.4
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 3.8e-44 182.2 184 56.0
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 1.2e-42 177.2 95 92.6
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 9.7e-40 167.5 189 49.7
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 1.6e-39 166.8 189 48.1
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 1.2e-34 150.6 91 79.1
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 3.2e-27 125.9 79 75.9
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 6.7e-25 118.2 185 36.2
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 1.3e-23 114.0 185 34.6
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 1.5e-19 100.5 51 88.2
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 3.5e-13 79.3 158 33.5
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 1.7e-07 60.5 28 92.9
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 2.8e-07 59.7 31 83.9


User provided reference genes

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