Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 6.5e-53 210.3 95 100.0
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.0e-45 186.4 95 90.5
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 4.6e-43 177.6 95 87.4
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 6.7e-42 173.7 95 88.4
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 2.0e-41 172.2 95 86.3
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.5e-38 162.5 95 81.1
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 4.5e-38 161.0 94 80.9
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 7.7e-38 160.2 94 79.8
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 3.8e-37 157.9 94 79.8
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.2e-35 152.9 90 81.1
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 2.3e-34 148.7 94 74.5
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 6.7e-34 147.1 88 79.5
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 7.4e-33 143.7 95 72.6
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.4e-31 139.4 84 72.6
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 1.4e-31 139.4 99 67.7
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 3.1e-31 138.3 95 69.5
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 3.1e-31 138.3 98 69.4
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 4.1e-31 137.9 92 67.4
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 4.1e-31 137.9 82 74.4
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.1e-31 137.9 90 68.9
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.1e-31 137.9 90 68.9
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 4.1e-31 137.9 95 69.5
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 9.1e-31 136.7 84 71.4
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 9.1e-31 136.7 93 69.9
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 1.2e-30 136.3 93 68.8
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.6e-30 136.0 96 66.7
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 2.0e-30 135.6 94 66.0
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 2.6e-30 135.2 89 67.4
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 2.6e-30 135.2 93 66.7
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.6e-30 135.2 89 68.5
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 2.6e-30 135.2 89 71.9
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 2.6e-30 135.2 96 68.8
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 3.5e-30 134.8 98 67.3
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.5e-30 134.8 91 67.0
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 3.5e-30 134.8 92 68.5
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 4.5e-30 134.4 94 68.1
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 4.5e-30 134.4 94 66.0
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 4.5e-30 134.4 96 67.7
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 5.9e-30 134.0 94 64.9
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 5.9e-30 134.0 92 67.4
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 5.9e-30 134.0 87 70.1
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 5.9e-30 134.0 92 65.2
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 5.9e-30 134.0 92 65.2
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 5.9e-30 134.0 95 66.3
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 7.7e-30 133.7 87 69.0
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 7.7e-30 133.7 94 66.0
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 7.7e-30 133.7 91 65.9
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 7.7e-30 133.7 83 69.9
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.0e-29 133.3 87 66.7
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.0e-29 133.3 81 71.6
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 1.0e-29 133.3 83 69.9
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.0e-29 133.3 93 64.5
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.0e-29 133.3 88 70.5
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.7e-29 132.5 87 69.0
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.7e-29 132.5 88 69.3
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 1.7e-29 132.5 97 68.0
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 1.7e-29 132.5 92 64.1
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.2e-29 132.1 87 69.0
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 2.9e-29 131.7 83 69.9
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 3.8e-29 131.3 85 70.6
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 5.0e-29 131.0 90 63.3
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 5.0e-29 131.0 84 70.2
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 8.5e-29 130.2 89 65.2
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 8.5e-29 130.2 107 59.8
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 8.5e-29 130.2 81 69.1
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 8.5e-29 130.2 98 64.3
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.9e-28 129.0 89 66.3
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 1.9e-28 129.0 93 63.4
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 3.2e-28 128.3 85 68.2
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.2e-28 128.3 98 65.3
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 5.5e-28 127.5 90 68.9
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 5.5e-28 127.5 82 67.1
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 5.5e-28 127.5 89 67.4
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 7.2e-28 127.1 90 68.9
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 9.4e-28 126.7 97 60.8
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 6.1e-27 124.0 94 61.7
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 1.4e-26 122.9 131 49.6
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 6.7e-26 120.6 138 45.7
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 2.6e-25 118.6 82 62.2
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 7.2e-20 100.5 82 54.9
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 4.8e-16 87.8 91 52.7
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 2.4e-15 85.5 53 64.2
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.4e-15 85.5 39 87.2
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 9.1e-15 83.6 199 31.2
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 2.9e-13 78.6 39 79.5
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.9e-13 78.6 39 79.5
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 6.1e-11 70.9 39 74.4
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 2.3e-10 68.9 65 53.8
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 3.0e-10 68.6 58 62.1
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 5.7e-09 64.3 48 62.5
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.2e-08 62.4 34 73.5
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 2.8e-08 62.0 84 35.7
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 4.9e-08 61.2 86 39.5
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 6.3e-08 60.8 86 38.4
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 8.3e-08 60.5 86 37.2
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 1.1e-07 60.1 46 60.9
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.1e-07 60.1 86 38.4
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 1.4e-07 59.7 83 36.1
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 1.4e-07 59.7 93 35.5
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.4e-07 59.7 87 36.8
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.4e-07 59.7 47 55.3
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.8e-07 59.3 86 37.2
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.8e-07 59.3 86 37.2
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.8e-07 59.3 87 36.8
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.8e-07 59.3 89 36.0
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 1.8e-07 59.3 88 35.2
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.8e-07 59.3 86 37.2
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 2.4e-07 58.9 85 35.3
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.4e-07 58.9 86 37.2
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 2.4e-07 58.9 86 36.0
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 3.1e-07 58.5 84 36.9
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 3.1e-07 58.5 91 34.1
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 3.1e-07 58.5 86 36.0
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 4.1e-07 58.2 94 34.0
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 5.4e-07 57.8 108 29.6
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 5.4e-07 57.8 30 76.7
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 5.4e-07 57.8 85 35.3
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 7.0e-07 57.4 86 37.2
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 7.0e-07 57.4 85 35.3
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 7.0e-07 57.4 85 34.1
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 9.2e-07 57.0 88 34.1
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 9.2e-07 57.0 92 37.0
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.2e-06 56.6 86 36.0
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.2e-06 56.6 86 36.0
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.2e-06 56.6 84 35.7
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.2e-06 56.6 86 36.0
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 1.6e-06 56.2 86 34.9
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.6e-06 56.2 96 33.3
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.6e-06 56.2 86 36.0
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.6e-06 56.2 86 36.0
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.6e-06 56.2 86 36.0
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.6e-06 56.2 86 36.0
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.6e-06 56.2 84 35.7
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 1.6e-06 56.2 86 36.0
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 1.6e-06 56.2 86 34.9
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 2.0e-06 55.8 86 36.0
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.0e-06 55.8 86 36.0
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 2.0e-06 55.8 86 36.0
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 2.0e-06 55.8 93 34.4
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 2.0e-06 55.8 85 34.1
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 2.7e-06 55.5 86 34.9
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 2.7e-06 55.5 85 34.1
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 2.7e-06 55.5 92 33.7
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 2.7e-06 55.5 86 34.9
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 2.7e-06 55.5 88 36.4
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 2.7e-06 55.5 86 34.9
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 3.5e-06 55.1 86 36.0
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 3.5e-06 55.1 93 34.4
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 3.5e-06 55.1 93 34.4
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 4.5e-06 54.7 86 34.9
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 4.5e-06 54.7 86 34.9
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 5.9e-06 54.3 85 34.1
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 5.9e-06 54.3 86 36.0
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 7.8e-06 53.9 86 34.9
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 7.8e-06 53.9 86 34.9
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 7.8e-06 53.9 97 33.0
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 7.8e-06 53.9 97 33.0


User provided reference genes

Program Settings