Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 5.8e-160 567.4 265 100.0
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 2.1e-154 548.9 254 100.0
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 1.4e-153 546.2 254 99.6
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 3.8e-151 538.1 254 97.6
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 4.2e-150 534.6 254 97.2
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 1.1e-139 500.0 256 91.8
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.7e-135 486.1 256 89.1
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 3.6e-133 478.4 255 87.8
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 5.1e-132 474.6 256 86.7
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 8.8e-132 473.8 261 85.4
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 8.8e-132 473.8 261 85.1
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 9.7e-131 470.3 256 85.9
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.3e-130 469.9 257 85.2
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.3e-130 469.9 260 85.0
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 1.4e-129 466.5 246 87.4
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 2.4e-129 465.7 246 87.4
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 2.0e-128 462.6 261 82.8
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 2.6e-128 462.2 246 86.2
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 3.4e-128 461.8 246 85.8
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 1.3e-127 459.9 260 83.1
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 3.2e-126 455.3 252 82.1
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 3.9e-124 448.4 253 81.4
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 6.7e-124 447.6 253 81.0
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.5e-123 446.4 256 78.9
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.0e-123 446.0 257 79.4
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 2.6e-123 445.7 254 81.5
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 3.3e-123 445.3 253 80.2
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 7.4e-123 444.1 250 80.8
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 9.7e-123 443.7 254 79.5
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 9.7e-123 443.7 241 83.0
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.3e-122 443.4 253 77.9
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.7e-122 443.0 254 80.3
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 2.2e-122 442.6 255 81.6
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 4.8e-122 441.4 249 79.9
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 6.3e-122 441.0 253 78.7
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 8.2e-122 440.7 240 81.7
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 1.1e-121 440.3 253 79.4
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.1e-121 440.3 253 79.8
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 1.8e-121 439.5 241 82.2
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.8e-121 439.5 259 77.2
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 1.8e-121 439.5 249 79.9
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 3.1e-121 438.7 250 80.8
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 3.1e-121 438.7 236 82.6
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 4.1e-121 438.3 241 81.7
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 4.1e-121 438.3 259 77.6
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 7.0e-121 437.6 248 78.2
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 7.0e-121 437.6 248 78.2
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 9.1e-121 437.2 235 83.4
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 9.1e-121 437.2 249 77.9
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 1.2e-120 436.8 249 78.7
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.2e-120 436.8 241 81.3
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 1.2e-120 436.8 263 76.8
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 1.2e-120 436.8 253 79.4
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.0e-120 436.0 241 81.3
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 2.0e-120 436.0 234 83.3
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 3.5e-120 435.3 256 77.3
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 3.5e-120 435.3 241 80.1
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 4.5e-120 434.9 241 81.7
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 5.9e-120 434.5 255 78.8
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 5.9e-120 434.5 257 77.0
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 1.0e-119 433.7 255 77.6
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 1.0e-119 433.7 240 80.8
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 6.5e-119 431.0 242 79.8
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 8.5e-119 430.6 250 78.0
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.1e-118 430.3 252 75.8
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 1.1e-118 430.3 249 79.1
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 7.2e-118 427.6 241 79.3
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 7.2e-118 427.6 258 76.0
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 9.4e-118 427.2 259 74.5
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 2.7e-117 425.6 256 75.0
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.7e-117 425.6 250 76.8
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.6e-117 425.2 250 76.8
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.6e-117 425.2 261 73.6
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.7e-117 424.9 241 78.0
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 8.0e-117 424.1 250 76.8
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.4e-116 423.3 256 73.4
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 2.3e-116 422.5 261 71.3
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 2.3e-116 422.5 250 76.8
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 3.9e-116 421.8 253 73.9
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 3.9e-116 421.8 272 72.4
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 6.7e-116 421.0 257 72.8
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 8.8e-116 420.6 248 75.8
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 8.8e-116 420.6 254 73.2
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 2.6e-115 419.1 258 73.6
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 3.3e-115 418.7 255 74.1
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.4e-115 418.3 252 74.6
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 7.4e-115 417.5 248 76.2
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.3e-114 416.8 243 76.1
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 2.2e-114 416.0 244 75.8
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 3.7e-114 415.2 235 78.7
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 3.7e-114 415.2 243 75.7
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 4.8e-114 414.8 248 75.4
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.8e-114 414.8 247 73.3
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.8e-113 412.9 245 72.7
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.8e-113 412.9 244 75.4
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.8e-113 412.9 241 75.5
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.4e-113 412.5 236 75.0
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 2.4e-113 412.5 230 78.3
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.4e-113 412.5 238 75.2
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 4.1e-113 411.8 230 79.1
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 4.1e-113 411.8 231 77.9
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 5.3e-113 411.4 260 70.4
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 7.0e-113 411.0 258 72.9
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 7.0e-113 411.0 237 75.1
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 9.1e-113 410.6 258 72.5
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 1.2e-112 410.2 250 75.2
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 1.2e-112 410.2 230 78.3
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.6e-112 409.1 241 74.3
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.6e-112 409.1 242 74.0
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 3.5e-112 408.7 232 76.7
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 3.5e-112 408.7 246 73.6
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 4.5e-112 408.3 245 74.7
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 4.5e-112 408.3 254 72.0
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 7.7e-112 407.5 248 73.0
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.3e-111 406.8 245 72.7
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 2.9e-111 405.6 247 72.5
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 3.8e-111 405.2 237 76.8
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 6.5e-111 404.4 249 71.5
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 8.5e-111 404.1 238 76.9
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 1.1e-110 403.7 234 75.6
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 1.5e-110 403.3 244 74.6
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 2.5e-110 402.5 245 73.1
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.2e-110 402.1 232 76.7
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 5.5e-110 401.4 248 70.2
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 7.2e-110 401.0 234 74.8
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 9.4e-110 400.6 239 73.6
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.2e-109 400.2 238 73.9
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.2e-109 400.2 247 72.9
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.2e-109 400.2 256 69.9
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 2.7e-109 399.1 224 76.8
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.7e-109 399.1 223 80.3
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 3.6e-109 398.7 240 72.9
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 8.0e-109 397.5 253 69.2
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 1.0e-108 397.1 240 73.3
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.2e-107 393.7 247 71.7
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-107 392.5 233 73.0
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.7e-106 389.8 247 69.6
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-105 387.1 233 72.5
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.2e-104 383.6 228 75.0
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 2.0e-104 382.9 229 73.8
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.9e-103 379.0 228 73.2
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 2.1e-101 372.9 209 82.8
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.7e-98 363.2 246 65.9
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 2.8e-98 362.5 236 68.6
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 4.8e-98 361.7 230 68.3
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 3.5e-96 355.5 254 63.0
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 1.3e-95 353.6 223 69.5
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 9.5e-94 347.4 243 64.2
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 1.0e-92 344.0 226 66.4
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 6.8e-92 341.3 233 62.7
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 2.0e-88 329.7 236 64.4
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.5e-80 302.4 178 78.1
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.6e-77 293.5 157 81.5
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 3.1e-76 289.3 156 81.4
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 5.2e-76 288.5 253 54.5
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 3.1e-60 236.1 177 61.0
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 8.4e-58 228.0 223 50.7
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 7.6e-51 204.9 232 46.6
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 8.1e-45 184.9 212 47.2
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 7.9e-40 168.3 96 80.2
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 5.1e-31 139.0 90 73.3
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 2.1e-29 133.7 116 56.9
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 3.8e-26 122.9 157 45.2
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 9.7e-14 81.6 51 60.8
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.8e-12 77.4 64 56.2


User provided reference genes

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