Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 2254.9 1224 100.0
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 2179.4 1227 97.4
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 2040.0 1233 91.6
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1971.4 1232 88.2
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1881.7 1249 82.1
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1823.1 1253 78.2
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1778.1 1238 77.1
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1773.1 1233 76.8
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1750.7 1228 76.5
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1738.4 1249 75.5
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1705.6 1237 73.2
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1611.3 1204 73.3
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1583.5 1235 70.9
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 0.0e+00 1573.9 1048 80.3
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1470.7 1256 64.6
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1416.7 851 93.8
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1220.3 1274 53.7
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1212.2 1274 53.5
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1202.2 1274 53.8
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1196.0 1246 53.9
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1180.2 1269 51.8
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1163.7 1267 53.4
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1162.1 1264 51.7
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1155.6 1266 52.2
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1152.9 1257 51.9
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1151.3 1266 52.4
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1148.3 1257 51.9
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1145.6 1269 52.6
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1144.8 1257 51.9
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1140.6 1274 50.5
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1139.0 1257 53.5
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1126.3 1276 49.8
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1124.8 1261 50.8
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1120.5 1259 51.4
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1119.8 1255 50.9
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1119.0 1088 56.2
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1112.1 1268 52.2
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1108.2 1266 51.7
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1105.9 1272 49.5
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1105.5 1278 49.2
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1093.6 1280 49.1
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1088.9 1257 49.0
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1088.2 1258 49.7
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1085.5 1267 48.8
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1083.6 1270 48.6
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1081.6 1260 50.2
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 2.5e-311 1072.4 1290 48.1
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 1.1e-309 1067.0 1263 52.3
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 9.1e-309 1063.9 1221 50.0
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 3.8e-307 1058.5 1261 48.3
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 3.8e-307 1058.5 1281 48.5
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 3.8e-307 1058.5 1267 48.2
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 4.0e-304 1048.5 1177 51.2
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 9.8e-303 1043.9 1279 47.2
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 4.9e-302 1041.6 1270 47.1
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 3.2e-301 1038.9 1155 50.1
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 7.8e-300 1034.2 1278 47.5
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 1.7e-299 1033.1 1250 47.4
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 5.0e-299 1031.6 1265 47.4
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 5.0e-299 1031.6 1267 47.6
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 5.6e-298 1028.1 1259 47.4
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 2.1e-297 1026.2 1263 46.7
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 5.8e-295 1018.1 1261 47.1
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 9.8e-295 1017.3 1245 48.0
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 4.9e-294 1015.0 1254 47.4
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 4.9e-294 1015.0 1255 46.6
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 2.3e-291 1006.1 1256 46.5
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 3.9e-291 1005.4 1109 52.0
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 9.5e-290 1000.7 1256 46.8
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 3.6e-289 998.8 1278 47.3
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 3.4e-287 992.3 1240 47.5
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 4.4e-287 991.9 1252 46.0
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 3.7e-286 988.8 1256 46.0
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 8.3e-286 987.6 1260 45.5
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 3.2e-285 985.7 1264 47.2
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 3.2e-285 985.7 1254 47.5
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 8.6e-283 977.6 1287 45.4
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 1.8e-280 969.9 1265 46.7
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 4.4e-279 965.3 1296 44.4
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 7.6e-279 964.5 1164 47.9
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 2.4e-277 959.5 1240 45.5
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 2.7e-276 956.1 1244 44.5
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 3.1e-272 942.6 1177 48.5
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 6.8e-272 941.4 854 60.4
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 6.8e-272 941.4 1021 51.8
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 5.8e-271 938.3 1260 43.4
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 3.8e-270 935.6 1248 44.2
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 6.6e-267 924.9 910 57.8
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 2.5e-266 922.9 1246 44.5
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 5.6e-266 921.8 930 56.0
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 1.1e-264 917.5 1248 45.9
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 2.1e-257 893.3 1258 44.0
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.3e-222 777.7 985 45.5
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 6.5e-198 695.7 994 44.2
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 4.0e-195 686.4 1118 39.0
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 2.7e-191 673.7 1267 35.0
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 5.9e-191 672.5 1229 36.4
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 4.3e-189 666.4 806 46.0
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 2.6e-186 657.1 902 43.1
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 7.6e-154 549.3 785 41.0
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 1.7e-153 548.1 1001 35.5
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.7e-153 548.1 755 41.6
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 6.2e-148 529.6 753 41.3
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 4.0e-147 526.9 569 51.7
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 7.6e-138 496.1 753 40.1
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 2.8e-124 451.1 428 59.1
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 5.0e-121 440.3 654 40.5
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 6.5e-105 386.7 648 38.3
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 1.8e-91 342.0 361 52.4
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 1.2e-87 329.3 236 68.6
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 9.1e-83 313.2 464 41.4
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 4.5e-82 310.8 349 51.9
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 1.7e-81 308.9 338 53.0
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 5.5e-80 303.9 389 45.5
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 5.5e-80 303.9 338 52.7
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 7.3e-72 276.9 473 34.0
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.8e-71 275.0 661 31.8
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 2.6e-61 241.9 447 34.9
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-53 216.1 344 34.9
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 1.2e-50 206.5 376 37.5
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 5.2e-46 191.0 401 31.9
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.7e-41 176.0 180 46.7
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 2.2e-36 159.1 170 51.8
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 6.0e-34 151.0 277 34.7
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 5.4e-27 127.9 260 36.9
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 5.6e-24 117.9 401 29.4
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.3e-15 90.1 204 30.9
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 4.8e-15 88.2 146 35.6
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 3.4e-13 82.0 104 40.4
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 2.2e-12 79.3 130 36.2
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 2.2e-12 79.3 178 32.6
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 4.9e-12 78.2 107 38.3
SMO364G0092 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 5.1e-09 68.2 250 25.2
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 8.7e-09 67.4 61 50.8


User provided reference genes

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