Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 8.7e-78 293.5 142 100.0
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 8.7e-78 293.5 142 100.0
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 4.3e-77 291.2 142 98.6
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 4.3e-77 291.2 142 98.6
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 3.4e-74 281.6 142 95.1
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 4.5e-74 281.2 142 95.1
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 7.6e-74 280.4 142 94.4
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 7.6e-74 280.4 142 94.4
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 7.6e-74 280.4 142 94.4
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 9.9e-74 280.0 142 94.4
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 9.9e-74 280.0 142 94.4
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 2.9e-73 278.5 142 94.4
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 2.9e-73 278.5 142 93.7
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 3.8e-73 278.1 142 93.7
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 3.8e-73 278.1 142 93.7
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 4.9e-73 277.7 142 93.7
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 4.9e-73 277.7 142 93.7
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.9e-72 275.8 142 93.0
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 4.3e-69 264.6 142 88.7
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 1.3e-68 263.1 142 86.6
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 3.7e-68 261.5 142 86.6
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 8.2e-68 260.4 142 88.0
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 2.4e-67 258.8 142 88.0
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 7.6e-66 253.8 142 83.1
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.3e-65 253.1 142 83.8
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 2.9e-65 251.9 142 84.5
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.9e-65 251.1 142 83.1
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 4.9e-65 251.1 142 83.1
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 8.4e-65 250.4 142 83.8
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 8.4e-65 250.4 142 84.5
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 8.7e-62 240.4 191 65.4
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 3.7e-60 235.0 140 76.4
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 4.8e-60 234.6 142 75.4
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 6.3e-60 234.2 142 74.6
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 8.2e-60 233.8 142 75.4
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 1.1e-59 233.4 142 75.4
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 1.4e-59 233.0 142 73.2
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 2.4e-59 232.3 142 74.6
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.1e-59 231.9 142 75.4
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 4.1e-59 231.5 142 73.9
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 4.1e-59 231.5 142 73.9
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 5.3e-59 231.1 142 74.6
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 6.9e-59 230.7 142 73.9
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 9.0e-59 230.3 142 73.9
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 1.2e-58 229.9 142 73.9
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.5e-58 229.6 142 75.4
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 2.0e-58 229.2 142 73.2
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 3.4e-58 228.4 142 71.8
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 74.6
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 73.9
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 73.9
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 2.9e-57 225.3 141 74.5
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 71.8
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 72.5
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 3.8e-57 224.9 141 71.6
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 69.7
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 8.5e-57 223.8 142 73.2
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 73.2
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 73.2
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 71.8
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.4e-56 223.0 139 74.1
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 72.5
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.9e-56 222.6 142 71.1
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 71.1
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 4.2e-56 221.5 141 72.3
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 71.1
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 71.1
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 71.8
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 7.2e-56 220.7 141 70.2
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 70.4
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 70.4
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 70.4
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 1.6e-55 219.5 142 69.7
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 2.1e-55 219.2 142 70.4
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.7e-55 218.8 142 71.1
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.0e-54 216.9 142 69.0
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.8e-54 216.1 141 70.9
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.9e-54 214.9 138 71.7
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 3.9e-54 214.9 141 70.2
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.9e-54 214.9 138 71.0
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 8.7e-54 213.8 138 71.0
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.9e-53 212.6 142 69.0
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.5e-53 212.2 141 70.9
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 3.3e-53 211.8 136 69.9
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 4.3e-53 211.5 138 71.7
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 9.7e-53 210.3 141 68.1
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.6e-52 209.5 135 72.6
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.6e-52 209.5 142 68.3
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.8e-52 208.8 140 65.0
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 4.8e-52 208.0 138 71.0
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 4.8e-52 208.0 142 69.0
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 4.8e-52 208.0 142 67.6
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 6.3e-52 207.6 140 65.0
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.4e-51 206.5 140 65.0
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 1.8e-51 206.1 138 70.3
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 2.4e-51 205.7 138 71.7
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 4.1e-51 204.9 139 67.6
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 4.1e-51 204.9 142 67.6
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 4.1e-51 204.9 140 64.3
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 6.9e-51 204.1 135 70.4
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 9.1e-51 203.8 141 65.2
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 9.1e-51 203.8 141 66.0
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.2e-50 203.4 141 66.0
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.2e-50 203.4 141 66.0
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.5e-50 203.0 141 68.1
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 1.5e-50 203.0 141 68.1
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 2.6e-50 202.2 142 64.1
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 3.4e-50 201.8 193 53.9
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 3.4e-50 201.8 193 53.9
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.4e-50 201.8 170 58.2
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 4.5e-50 201.4 142 71.1
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 5.9e-50 201.1 137 64.2
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 2.2e-49 199.1 141 67.4
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 2.2e-49 199.1 154 61.7
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 2.9e-49 198.7 141 68.1
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 5.0e-49 198.0 138 67.4
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 8.5e-49 197.2 142 64.8
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 1.1e-48 196.8 142 65.5
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.1e-48 196.8 141 66.7
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 2.5e-48 195.7 138 65.9
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 5.5e-48 194.5 137 67.2
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 9.4e-48 193.7 143 65.0
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 1.6e-47 193.0 142 64.1
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.1e-47 192.6 142 62.7
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 2.1e-47 192.6 142 64.8
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.7e-47 192.2 142 64.1
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 3.6e-47 191.8 138 64.5
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 3.6e-47 191.8 142 64.1
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 6.1e-47 191.0 142 62.0
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 1.0e-46 190.3 117 74.4
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.4e-46 189.9 135 64.4
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 2.3e-46 189.1 142 63.4
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 3.0e-46 188.7 140 65.0
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 8.8e-46 187.2 142 61.3
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.5e-45 186.4 142 62.0
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 2.8e-44 182.2 140 64.3
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 4.8e-44 181.4 138 63.0
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 1.1e-43 180.3 157 56.7
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.4e-43 179.9 142 61.3
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 9.1e-43 177.2 141 62.4
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.5e-42 176.4 175 52.6
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 4.7e-39 164.9 140 55.0
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 4.7e-39 164.9 108 69.4
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.5e-37 159.8 137 54.7
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 4.4e-37 158.3 137 54.0
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 2.8e-36 155.6 125 59.2
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 3.7e-36 155.2 141 55.3
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.3e-36 154.5 141 54.6
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 1.8e-35 152.9 142 52.1
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 9.1e-35 150.6 138 53.6
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 2.2e-33 146.0 285 32.6
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-32 143.7 129 51.9
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.5e-32 143.3 129 51.9
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.2e-29 133.7 124 51.6
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 4.1e-27 125.2 115 59.1
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 5.9e-26 121.3 127 46.5
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 5.0e-25 118.2 73 69.9
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 1.2e-23 113.6 112 58.9
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 1.6e-23 113.2 81 65.4
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 3.6e-23 112.1 80 65.0
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 4.4e-21 105.1 67 68.7
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 7.5e-21 104.4 115 55.7
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.8e-20 101.7 109 48.6
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.8e-20 101.7 109 48.6
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.8e-20 101.7 109 48.6
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 5.4e-19 98.2 121 43.0
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 2.7e-18 95.9 67 65.7
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 5.0e-17 91.7 116 40.5
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 5.0e-17 91.7 87 52.9
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 1.1e-16 90.5 59 66.1
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 1.1e-16 90.5 59 66.1
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.8e-14 83.2 77 53.2
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 6.8e-14 81.3 77 49.4
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 6.8e-14 81.3 68 54.4
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 8.3e-12 74.3 68 51.5
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 2.7e-10 69.3 71 53.5
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 5.9e-10 68.2 39 66.7
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.3e-09 67.0 42 71.4
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 3.8e-09 65.5 43 67.4
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 5.0e-09 65.1 32 90.6
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.1e-08 63.9 40 72.5
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.1e-08 63.9 123 37.4
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 3.6e-07 58.9 34 76.5
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 8.0e-07 57.8 34 73.5
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 5.2e-06 55.1 34 70.6
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 6.8e-06 54.7 36 66.7


User provided reference genes

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