Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 6.0e-198 694.1 387 100.0
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 8.4e-184 647.1 368 98.6
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 7.4e-164 580.9 345 95.9
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 8.2e-163 577.4 343 95.9
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 2.0e-156 556.2 338 89.9
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.5e-127 460.3 292 89.4
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.1e-126 456.4 337 79.8
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 7.5e-124 448.0 299 86.3
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.5e-119 433.7 319 80.6
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 2.1e-118 429.9 246 86.6
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 3.6e-118 429.1 292 84.9
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 2.3e-117 426.4 246 85.8
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 4.1e-114 415.6 246 85.4
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 7.0e-114 414.8 315 78.4
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 3.9e-112 409.1 292 82.9
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 5.1e-112 408.7 295 82.0
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 8.9e-109 397.9 292 78.8
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.8e-102 376.3 306 74.5
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.4e-98 363.2 246 74.4
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 9.0e-93 344.7 246 71.5
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 9.0e-93 344.7 294 73.5
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 2.0e-92 343.6 245 71.0
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.6e-92 341.7 248 69.4
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 1.3e-91 340.9 294 70.7
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 2.2e-91 340.1 328 66.2
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.2e-91 340.1 249 69.1
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.2e-91 340.1 296 71.6
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.2e-91 340.1 292 71.9
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 3.8e-91 339.3 326 65.0
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 4.9e-91 339.0 306 68.0
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 8.4e-91 338.2 293 70.6
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 5.4e-90 335.5 300 68.3
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 7.1e-90 335.1 301 69.4
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.2e-89 334.3 297 70.0
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 2.1e-89 333.6 300 68.0
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 3.5e-89 332.8 268 64.6
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 3.5e-89 332.8 248 69.0
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 3.5e-89 332.8 230 70.9
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 6.0e-89 332.0 230 70.9
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 7.8e-89 331.6 248 68.1
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 7.8e-89 331.6 292 69.9
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.0e-88 331.3 248 69.8
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 1.3e-88 330.9 227 70.9
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.3e-88 330.9 246 67.9
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.7e-88 330.5 246 67.9
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 3.0e-88 329.7 307 66.4
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 3.9e-88 329.3 244 70.5
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 5.1e-88 328.9 256 66.4
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 8.7e-88 328.2 247 69.6
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 8.7e-88 328.2 292 70.2
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.5e-87 327.4 292 70.2
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.5e-87 327.4 300 67.0
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 1.9e-87 327.0 228 70.2
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 3.3e-87 326.2 334 64.4
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 5.6e-87 325.5 245 69.4
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 5.6e-87 325.5 231 69.7
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.3e-86 324.3 246 67.5
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.6e-86 323.9 295 69.2
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.1e-86 323.6 246 66.3
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.8e-86 323.2 294 68.7
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.8e-86 323.2 226 71.7
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 3.6e-86 322.8 247 66.0
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 4.8e-86 322.4 244 66.8
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 8.1e-86 321.6 248 66.9
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.1e-85 321.2 248 66.9
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.1e-85 321.2 248 67.3
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.4e-85 320.1 248 64.9
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.4e-85 320.1 248 65.3
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 3.1e-85 319.7 247 65.2
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.1e-85 319.7 247 65.2
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.0e-85 319.3 246 67.1
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.0e-85 319.3 263 63.1
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 9.0e-85 318.2 294 68.0
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 9.0e-85 318.2 294 68.0
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.5e-84 317.4 311 65.3
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 2.6e-84 316.6 247 65.2
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 7.6e-84 315.1 247 66.4
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 9.9e-84 314.7 297 66.7
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 9.9e-84 314.7 322 64.9
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 1.3e-83 314.3 248 66.1
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 1.7e-83 313.9 246 65.0
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.2e-83 313.5 308 65.6
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.4e-82 310.8 309 65.4
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 4.2e-82 309.3 245 65.7
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 7.1e-82 308.5 264 62.5
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 9.3e-82 308.1 248 64.5
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 3.5e-81 306.2 248 65.3
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 7.9e-81 305.1 301 56.8
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.3e-80 304.3 247 65.6
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.3e-80 304.3 232 65.9
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.0e-80 303.1 281 59.4
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 5.1e-80 302.4 253 63.6
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.1e-79 301.2 247 64.0
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.5e-79 300.8 253 63.2
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.9e-79 300.4 279 60.2
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 9.6e-79 298.1 293 66.9
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.1e-78 297.0 246 63.0
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 3.7e-78 296.2 250 60.0
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 4.8e-78 295.8 232 65.5
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 8.1e-78 295.0 248 61.3
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 3.1e-77 293.1 214 70.1
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 7.6e-76 288.5 238 62.2
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 2.9e-75 286.6 248 60.5
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.5e-74 283.5 248 60.9
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 2.5e-74 283.5 214 66.4
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 6.0e-73 278.9 304 61.5
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.0e-72 278.1 300 63.7
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 3.0e-72 276.6 292 61.6
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 5.1e-72 275.8 246 59.8
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 6.2e-70 268.9 246 59.3
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 2.4e-69 266.9 285 61.4
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 6.9e-69 265.4 248 58.5
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 5.8e-68 262.3 240 60.0
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.7e-67 260.8 246 59.3
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.4e-66 257.7 229 59.0
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 1.4e-66 257.7 230 57.4
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 8.2e-62 241.9 312 56.1
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 6.9e-61 238.8 247 53.4
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.5e-60 237.7 252 53.6
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 5.9e-60 235.7 203 62.1
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.2e-57 228.0 251 63.3
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 2.7e-57 226.9 239 56.1
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 3.0e-56 223.4 191 61.8
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.1e-55 221.5 235 65.1
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 2.2e-54 217.2 252 50.0
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.1e-53 213.4 179 60.3
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.0e-52 210.7 262 49.2
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 2.0e-52 210.7 204 55.9
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 7.7e-52 208.8 254 51.6
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 6.5e-51 205.7 207 55.1
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 8.5e-51 205.3 212 53.3
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 7.0e-37 159.1 124 64.5
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 2.7e-33 147.1 290 46.9
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 2.0e-31 141.0 144 52.8
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 4.8e-30 136.3 240 39.2
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 6.3e-30 136.0 244 41.4
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 7.0e-29 132.5 241 37.8
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 1.2e-25 121.7 248 36.7
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.4e-24 118.2 54 100.0
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.8e-24 117.9 228 38.2
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 3.0e-24 117.1 251 36.7
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 1.3e-22 111.7 139 49.6
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.7e-22 111.3 242 35.1
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 1.1e-21 108.6 228 34.6
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.8e-21 107.8 226 35.4
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 2.4e-21 107.5 241 35.7
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.4e-21 107.5 242 35.1
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.4e-21 107.5 242 35.1
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 3.1e-21 107.1 228 34.2
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 4.1e-21 106.7 235 38.7
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.2e-20 105.1 229 39.7
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 3.5e-20 103.6 240 34.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.0e-19 102.1 257 33.1
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 6.6e-19 99.4 237 36.3
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 6.6e-19 99.4 228 32.9
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 1.2e-17 95.1 56 76.8
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.3e-16 90.9 248 31.0
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.5e-15 88.2 45 86.7
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 4.4e-15 86.7 260 33.8
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.7e-15 86.3 230 33.5
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.7e-14 84.7 164 37.8
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 7.0e-13 79.3 252 31.7
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.2e-12 78.6 171 36.3
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 3.9e-11 73.6 106 67.0
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.8e-09 67.4 208 30.3
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 1.8e-08 64.7 53 52.8
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 4.0e-08 63.5 104 40.4
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 4.0e-08 63.5 174 32.2
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 6.8e-08 62.8 95 38.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 8.9e-08 62.4 54 53.7
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 2.0e-07 61.2 248 25.4
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 7.5e-07 59.3 34 61.8
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 9.8e-07 58.9 30 73.3


User provided reference genes

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