Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 1.3e-123 446.4 228 100.0
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 1.3e-123 446.4 228 100.0
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 7.8e-121 437.2 228 98.2
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 7.8e-121 437.2 228 98.2
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 5.8e-116 421.0 231 94.4
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 2.2e-115 419.1 228 95.2
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 2.9e-115 418.7 228 94.7
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 1.3e-112 409.8 229 93.4
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 1.3e-112 409.8 229 93.4
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 1.7e-112 409.5 230 92.2
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 1.5e-111 406.4 230 91.3
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 3.3e-111 405.2 230 90.4
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 3.1e-109 398.7 234 89.3
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 6.9e-109 397.5 258 83.3
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 3.9e-104 381.7 231 86.1
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 9.0e-93 344.0 233 79.0
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 1.3e-91 340.1 235 74.0
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 1.8e-88 329.7 231 74.5
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 3.9e-88 328.6 230 73.0
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 8.7e-88 327.4 228 74.6
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 1.1e-87 327.0 233 74.2
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 1.5e-87 326.6 229 74.2
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.5e-87 326.6 229 74.2
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 1.9e-87 326.2 232 74.1
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 2.5e-87 325.9 229 73.8
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 2.5e-87 325.9 223 75.3
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 3.3e-87 325.5 236 73.3
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 4.3e-87 325.1 220 75.9
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 7.4e-87 324.3 234 72.2
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 9.6e-87 323.9 229 74.7
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.3e-86 323.6 231 71.0
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 2.1e-86 322.8 223 74.9
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 2.8e-86 322.4 227 75.8
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 6.2e-86 321.2 226 71.7
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 8.2e-86 320.9 228 74.1
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 3.1e-85 318.9 225 71.6
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 4.0e-85 318.5 230 71.3
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 4.0e-85 318.5 232 72.0
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 5.3e-85 318.2 230 73.0
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 6.9e-85 317.8 230 73.0
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 6.9e-85 317.8 234 71.4
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 6.9e-85 317.8 226 71.2
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 9.0e-85 317.4 226 73.0
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 9.0e-85 317.4 228 71.5
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 1.5e-84 316.6 232 71.6
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 1.5e-84 316.6 223 73.5
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 2.0e-84 316.2 226 72.6
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 2.6e-84 315.8 237 72.6
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 3.4e-84 315.5 226 69.9
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 1.3e-83 313.5 238 70.2
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 1.3e-83 313.5 227 72.2
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 2.9e-83 312.4 225 73.3
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 4.9e-83 311.6 225 72.4
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 2.5e-82 309.3 232 69.4
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 5.5e-82 308.1 225 69.3
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 5.5e-82 308.1 234 70.5
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 1.6e-81 306.6 229 71.6
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 3.5e-81 305.4 223 70.9
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 7.9e-81 304.3 230 69.1
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 5.1e-80 301.6 231 69.3
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 6.7e-80 301.2 215 74.0
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 8.7e-80 300.8 230 67.8
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 1.1e-79 300.4 230 67.0
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 7.4e-79 297.7 230 67.0
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 3.7e-78 295.4 230 66.5
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 4.8e-78 295.0 183 80.3
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 1.1e-77 293.9 229 66.8
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 4.1e-77 292.0 202 75.7
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 5.3e-77 291.6 231 67.1
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 2.6e-76 289.3 237 68.4
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 1.7e-75 286.6 235 66.0
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 1.1e-74 283.9 206 68.9
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 7.2e-74 281.2 216 66.7
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 1.2e-73 280.4 237 66.7
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 2.1e-73 279.6 237 65.4
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 6.1e-73 278.1 229 63.8
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 3.9e-72 275.4 239 65.7
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 5.1e-72 275.0 231 64.1
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 5.7e-71 271.6 182 74.7
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 7.4e-71 271.2 227 64.3
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 3.7e-70 268.9 222 64.9
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 3.7e-70 268.9 230 61.7
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 4.8e-70 268.5 228 62.7
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 4.1e-69 265.4 163 78.5
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 9.4e-66 254.2 223 59.6
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 1.0e-64 250.8 230 60.0
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 3.3e-63 245.7 223 57.0
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 8.2e-62 241.1 125 100.0
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 1.4e-61 240.4 226 58.8
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 1.4e-61 240.4 162 74.1
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 1.5e-60 236.9 219 59.4
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 2.0e-60 236.5 197 63.5
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 5.9e-60 235.0 196 62.2
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 5.0e-59 231.9 231 58.0
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 2.1e-57 226.5 142 78.9
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 3.3e-55 219.2 141 77.3
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 1.3e-54 217.2 139 78.4
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 2.6e-52 209.5 139 75.5
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 8.8e-48 194.5 226 53.1
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 2.0e-47 193.4 136 73.5
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 1.3e-43 180.6 194 50.0
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 2.2e-43 179.9 95 86.3
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 5.0e-43 178.7 229 49.8
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 5.0e-43 178.7 188 52.1
AagrBONN_evm.TU.Sc2ySwM_368.469 Anthoceros agrestis HOM05D001304 ORTHO05D008890 4.2e-42 175.6 183 48.1
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 2.8e-38 162.9 189 45.0
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 2.7e-36 156.4 133 62.4
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 4.5e-36 155.6 140 64.3
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 4.2e-34 149.1 174 44.3
SMO367G0665 Selaginella moellendorffii HOM05D001304 ORTHO05D008890 8.3e-30 134.8 166 44.0
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 5.6e-26 122.1 227 39.2
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 6.1e-25 118.6 90 68.9
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 1.5e-18 97.4 57 86.0
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 1.2e-15 87.8 93 55.9
PRCOL_00000361 Prasinoderma coloniale HOM05D001304 ORTHO05D008890 6.0e-12 75.5 142 26.1
MCO01G115 Micromonas commoda HOM05D001304 ORTHO05D008890 1.7e-11 73.9 176 26.1
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 7.3e-10 68.6 160 32.5


User provided reference genes

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