Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 2.3e-28 128.3 67 100.0
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 2.3e-28 128.3 67 100.0
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 2.3e-28 128.3 67 100.0
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 5.1e-28 127.1 67 98.5
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 5.1e-28 127.1 67 98.5
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 3.6e-26 120.9 68 94.1
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 4.0e-25 117.5 67 91.0
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 3.4e-24 114.4 67 88.1
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 7.6e-24 113.2 67 89.6
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 7.6e-24 113.2 67 89.6
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 2.2e-23 111.7 67 86.6
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 2.2e-23 111.7 67 86.6
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 2.2e-23 111.7 67 86.6
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 4.9e-23 110.5 67 86.6
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 4.9e-23 110.5 67 85.1
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 4.9e-23 110.5 67 85.1
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 4.9e-23 110.5 67 85.1
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 8.4e-23 109.8 65 86.2
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 1.9e-22 108.6 67 85.1
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 7.1e-22 106.7 65 89.2
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 1.6e-21 105.5 68 85.3
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 2.1e-21 105.1 68 85.3
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 3.5e-21 104.4 68 83.8
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 1.4e-14 82.4 72 69.4
BcaB03g12049 Brassica carinata HOM05D007313 ORTHO05D005299 1.6e-13 79.0 74 66.2
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 2.7e-13 78.2 68 69.1
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 2.7e-13 78.2 68 69.1
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 2.7e-13 78.2 68 69.1
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 3.5e-13 77.8 73 64.4
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 3.5e-13 77.8 54 77.8
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 3.5e-13 77.8 54 77.8
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 3.5e-13 77.8 54 77.8
Sp1g23170 Schrenkiella parvula HOM05D007313 ORTHO05D005299 7.9e-13 76.6 73 64.4
AL1G40310 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 1.0e-12 76.3 74 67.6
Carub.0001s2549 Capsella rubella HOM05D007313 ORTHO05D005299 1.3e-12 75.9 73 64.4
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 1.8e-12 75.5 75 64.0
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 3.0e-12 74.7 59 71.2
A08p26710 Brassica napus HOM05D007313 ORTHO05D005299 1.9e-11 72.0 65 66.2
BraA08t34617Z Brassica rapa HOM05D007313 ORTHO05D005299 1.9e-11 72.0 65 66.2
CARHR026470 Cardamine hirsuta HOM05D007313 ORTHO05D005299 2.5e-11 71.6 73 61.6
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 2.5e-11 71.6 55 70.9
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 4.3e-11 70.9 68 61.8
AT1G24600 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 4.3e-11 70.9 73 63.0
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 7.4e-11 70.1 61 63.9
Aa31LG7G9440 Aethionema arabicum HOM05D007313 ORTHO05D005299 9.6e-11 69.7 71 63.4
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 1.6e-10 68.9 66 63.6
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 2.8e-10 68.2 53 71.7
A07p12350 Brassica napus HOM05D007313 ORTHO05D005299 4.8e-10 67.4 74 62.2
BraA07t29016Z Brassica rapa HOM05D007313 ORTHO05D005299 4.8e-10 67.4 74 62.2
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 4.8e-10 67.4 65 58.5
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 6.2e-10 67.0 54 66.7
BcaB03g14014 Brassica carinata HOM05D007313 ORTHO05D005299 1.4e-09 65.9 74 60.8
BcaC06g35248 Brassica carinata HOM05D007313 ORTHO05D005299 4.0e-09 64.3 74 62.2
C07p18250 Brassica napus HOM05D007313 ORTHO05D005299 4.0e-09 64.3 74 62.2
BolC7t42335H Brassica oleracea HOM05D007313 ORTHO05D005299 4.0e-09 64.3 74 62.2
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 4.0e-09 64.3 79 50.6
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 5.3e-09 63.9 70 57.1
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 1.2e-08 62.8 76 52.6
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 1.2e-08 62.8 57 63.2
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 1.5e-08 62.4 74 55.4
Sabra10G0078300 Salix brachista HOM05D007313 ORTHO05D005299 7.6e-08 60.1 67 53.7
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 1.0e-07 59.7 76 50.0
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.0e-07 59.7 76 52.6
C05p25550 Brassica napus HOM05D007313 ORTHO05D005299 1.3e-07 59.3 61 62.3
BolC5t31282H Brassica oleracea HOM05D007313 ORTHO05D005299 1.3e-07 59.3 61 62.3
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.3e-07 59.3 76 52.6
CANSAT01G0361 Cannabis sativa HOM05D007313 ORTHO05D005299 2.2e-07 58.5 56 62.5
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 2.2e-07 58.5 79 51.9
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 2.9e-07 58.2 59 57.6
BcaC05g26505 Brassica carinata HOM05D007313 ORTHO05D005299 4.9e-07 57.4 61 60.7
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 4.9e-07 57.4 59 59.3
A09p38970 Brassica napus HOM05D007313 ORTHO05D005299 6.5e-07 57.0 74 54.1
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 6.5e-07 57.0 53 60.4
MD16G1019400 Malus domestica HOM05D007313 ORTHO05D005299 8.4e-07 56.6 68 55.9
Cpa.g.sc3.366 Carica papaya HOM05D008500 ORTHO05D005299 1.1e-06 56.2 52 67.3
Gohir.A12G270500 Gossypium hirsutum HOM05D008500 ORTHO05D005299 1.1e-06 56.2 72 58.3
Gohir.D12G270900 Gossypium hirsutum HOM05D008500 ORTHO05D005299 1.1e-06 56.2 72 58.3
Lj4g0008951 Lotus japonicus HOM05D007313 ORTHO05D005299 1.1e-06 56.2 52 59.6
Prupe.1G332700 Prunus persica HOM05D007313 ORTHO05D005299 1.1e-06 56.2 66 57.6
BcaC05g26701 Brassica carinata HOM05D007313 ORTHO05D005299 1.4e-06 55.8 66 57.6
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 1.9e-06 55.5 77 48.1
Manes.14G157100 Manihot esculenta HOM05D008500 ORTHO05D005299 1.9e-06 55.5 54 59.3
Duzib205G0189 Durio zibethinus HOM05D008500 ORTHO05D005299 2.5e-06 55.1 71 56.3
Thecc.03G061000 Theobroma cacao HOM05D008500 ORTHO05D005299 2.5e-06 55.1 72 52.8
Medtr8g105190 Medicago truncatula HOM05D007313 ORTHO05D005299 3.2e-06 54.7 72 50.0
PGSC0003DMG400029516 Solanum tuberosum HOM05D007313 ORTHO05D005299 3.2e-06 54.7 66 53.0
Haze_10890 Corylus avellana HOM05D007313 ORTHO05D005299 4.2e-06 54.3 65 55.4
Gorai.008G291300 Gossypium raimondii HOM05D008500 ORTHO05D005299 4.2e-06 54.3 72 56.9
TPR.G27729 Trifolium pratense HOM05D007313 ORTHO05D005299 4.2e-06 54.3 52 57.7
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 5.5e-06 53.9 69 52.2
Sopen04g003130 Solanum pennellii HOM05D007313 ORTHO05D005299 9.3e-06 53.1 62 54.8
TPR.G18382 Trifolium pratense HOM05D008500 ORTHO05D005299 9.3e-06 53.1 66 54.5


User provided reference genes

Program Settings