Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 6.7e-151 537.3 275 100.0
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 4.5e-115 418.3 214 99.5
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 2.6e-110 402.5 218 95.0
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 2.0e-99 366.3 215 89.8
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 5.8e-94 348.2 220 83.2
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 2.0e-86 323.2 236 76.7
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 5.8e-86 321.6 226 76.5
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 3.9e-82 308.9 220 75.0
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 1.9e-81 306.6 220 75.0
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 1.8e-79 300.1 218 73.4
BolC6t38885H Brassica oleracea HOM05D006456 ORTHO05D007588 2.0e-78 296.6 147 100.0
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 7.1e-76 288.1 218 67.4
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 3.5e-59 232.6 220 59.1
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 5.1e-58 228.8 119 99.2
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 2.5e-57 226.5 221 57.0
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 1.8e-55 220.3 119 96.6
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 5.8e-54 215.3 217 57.1
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 1.7e-53 213.8 233 54.1
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 8.4e-53 211.5 214 54.7
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 1.1e-52 211.1 223 54.3
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 1.1e-52 211.1 217 55.8
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 3.5e-51 206.1 218 53.2
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 7.9e-51 204.9 236 52.1
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 1.8e-50 203.8 219 56.2
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 5.1e-50 202.2 223 51.6
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 5.6e-49 198.7 222 50.0
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 2.1e-48 196.8 218 52.3
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 2.1e-48 196.8 218 52.3
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 2.1e-48 196.8 220 53.2
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 2.8e-48 196.4 215 54.0
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 3.7e-48 196.1 218 52.3
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 3.7e-48 196.1 220 50.5
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 8.1e-48 194.9 222 54.5
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 1.1e-47 194.5 228 48.7
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 1.4e-47 194.1 224 50.9
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 1.4e-47 194.1 222 51.8
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 1.4e-47 194.1 224 52.2
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 2.4e-47 193.4 231 49.8
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 5.3e-47 192.2 223 49.3
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 6.9e-47 191.8 216 50.5
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 6.9e-47 191.8 231 50.6
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 1.2e-46 191.0 214 50.0
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 1.2e-46 191.0 258 46.9
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 2.2e-45 186.8 222 51.4
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 2.9e-45 186.4 220 51.8
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 2.9e-45 186.4 217 50.2
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 2.9e-45 186.4 225 48.9
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 4.9e-45 185.7 226 47.8
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 4.9e-45 185.7 214 51.4
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 4.9e-45 185.7 229 50.7
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 4.9e-45 185.7 225 49.3
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 8.4e-45 184.9 223 48.4
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 2.5e-44 183.3 225 48.0
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 7.1e-44 181.8 246 45.5
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 7.1e-44 181.8 222 47.7
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 1.2e-43 181.0 225 49.3
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 2.1e-43 180.3 232 48.3
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 2.1e-43 180.3 224 50.4
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 6.0e-43 178.7 221 50.2
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 7.9e-43 178.3 220 49.1
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 7.9e-43 178.3 221 48.0
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.3e-42 177.6 216 50.0
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.8e-42 177.2 217 49.8
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 2.3e-42 176.8 220 46.8
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 3.0e-42 176.4 224 48.2
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 3.9e-42 176.0 212 50.0
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 3.9e-42 176.0 217 49.8
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 3.9e-42 176.0 221 48.4
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 5.1e-42 175.6 238 45.8
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 6.7e-42 175.3 221 48.0
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 1.1e-41 174.5 217 50.2
BraA07t30840Z Brassica rapa HOM05D006456 ORTHO05D007588 1.5e-41 174.1 91 93.4
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 5.7e-41 172.2 267 41.6
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 1.3e-40 171.0 227 45.4
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 2.1e-40 170.2 226 46.0
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 8.2e-40 168.3 224 46.0
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 1.4e-39 167.5 201 49.3
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 6.9e-39 165.2 228 47.4
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 6.9e-39 165.2 222 48.2
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 2.6e-38 163.3 215 43.7
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 3.4e-38 162.9 170 50.0
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 3.4e-38 162.9 230 43.9
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 1.3e-37 161.0 218 46.8
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 1.1e-36 157.9 222 46.4
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 5.5e-36 155.6 236 44.9
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 5.5e-36 155.6 190 47.4
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 9.3e-36 154.8 222 42.3
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 3.0e-34 149.8 223 42.6
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 5.1e-34 149.1 229 42.8
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 1.5e-33 147.5 225 44.4
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 5.7e-33 145.6 230 41.7
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 1.3e-32 144.4 217 42.4
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 4.8e-32 142.5 211 42.7
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 6.3e-32 142.1 217 45.2
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 5.3e-31 139.0 169 49.7
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 2.0e-30 137.1 221 38.0
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 3.4e-30 136.3 220 38.6
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 1.7e-29 134.0 128 55.5
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 1.7e-29 134.0 226 39.4
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 3.8e-29 132.9 139 48.9
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 1.4e-28 131.0 221 38.9
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 1.6e-27 127.5 230 39.1
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 1.6e-27 127.5 223 39.9
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 7.9e-27 125.2 232 37.1
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 1.8e-26 124.0 230 37.8
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 3.3e-25 119.8 233 35.2
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 3.7e-24 116.3 174 44.3
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 1.8e-23 114.0 316 33.5
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 3.1e-23 113.2 139 45.3
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 2.8e-16 90.1 223 31.8
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 1.6e-14 84.3 56 69.6
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 2.0e-14 84.0 232 28.4
C04p24790 Brassica napus HOM05D011583 ORTHO05D041434 5.0e-13 79.3 79 63.3
BolC4t23983H Brassica oleracea HOM05D011583 ORTHO05D041434 5.0e-13 79.3 79 63.3
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 6.5e-13 79.0 237 30.8
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 1.0e-10 71.6 109 41.3
A08p10170 Brassica napus HOM05D011583 ORTHO05D017584 9.7e-09 65.1 69 59.4
A09p42480 Brassica napus HOM05D011583 ORTHO05D017584 9.7e-09 65.1 69 59.4
BraA08t33016Z Brassica rapa HOM05D011583 ORTHO05D017584 9.7e-09 65.1 69 59.4
BraA09t39725Z Brassica rapa HOM05D011583 ORTHO05D017584 9.7e-09 65.1 69 59.4
BcaB06g26972 Brassica carinata HOM05D006456 ORTHO05D007588 2.2e-08 63.9 46 67.4
SEGI_26799 Sequoiadendron giganteum HOM05D006456 ORTHO05D007588 2.8e-08 63.5 101 35.6
BcaC01g03290 Brassica carinata HOM05D011583 ORTHO05D017584 3.7e-08 63.2 63 63.5
BcaC07g37557 Brassica carinata HOM05D011583 ORTHO05D007588 3.7e-08 63.2 38 86.8
BolC3t17677H Brassica oleracea HOM05D011583 ORTHO05D017584 3.7e-08 63.2 63 63.5
SHI16262 Sapria himalayana HOM05D006456 ORTHO05D007588 1.1e-07 61.6 196 32.7
Actinidia31998 Actinidia chinensis HOM05D006456 ORTHO05D007588 1.4e-07 61.2 86 48.8
BcaC03g13732 Brassica carinata HOM05D011583 ORTHO05D017584 3.1e-07 60.1 63 61.9
BcaC03g13733 Brassica carinata HOM05D011583 ORTHO05D017584 3.1e-07 60.1 63 61.9
BolC2t07015H Brassica oleracea HOM05D011583 ORTHO05D017584 3.1e-07 60.1 63 61.9
SHI16259 Sapria himalayana HOM05D006456 ORTHO05D007588 4.1e-07 59.7 49 59.2
BcaB03g16564 Brassica carinata HOM05D011583 ORTHO05D007588 7.0e-07 58.9 44 70.5
BcaB07g33544 Brassica carinata HOM05D011583 ORTHO05D007588 7.0e-07 58.9 46 71.7
MCO07G657 Micromonas commoda HOM05D000984 ORTHO05D001096 3.5e-06 56.6 68 38.2
Cre16.g675749 Chlamydomonas reinhardtii HOM05D000984 ORTHO05D001096 5.9e-06 55.8 83 31.3


User provided reference genes

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