Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 3.3e-101 371.7 186 100.0
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 1.7e-60 236.5 119 99.2
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 2.2e-57 226.1 128 90.6
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 5.0e-57 224.9 128 89.8
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 2.9e-49 199.1 136 77.2
BcaC08g45945 Brassica carinata HOM05D000085 ORTHO05D000274 2.3e-46 189.5 95 100.0
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 1.5e-45 186.8 122 78.7
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 4.4e-45 185.3 142 68.3
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 4.4e-45 185.3 142 68.3
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 2.8e-44 182.6 148 64.9
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 2.8e-44 182.6 148 64.9
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 3.7e-44 182.2 148 64.2
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 3.7e-44 182.2 133 74.4
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.8e-38 163.3 133 65.4
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 4.4e-37 158.7 119 68.1
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 1.1e-35 154.1 116 69.0
BcaC08g45936 Brassica carinata HOM05D000085 ORTHO05D000274 4.1e-35 152.1 91 85.7
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 2.4e-27 126.3 154 49.4
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 7.0e-27 124.8 110 63.6
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.3e-25 120.6 122 56.6
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.7e-25 120.2 120 55.8
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 8.6e-25 117.9 124 54.8
Thhalv10019756m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.5e-24 117.1 89 69.7
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 1.6e-23 113.6 121 56.2
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 2.8e-23 112.8 121 54.5
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 2.8e-23 112.8 121 54.5
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 4.7e-23 112.1 117 55.6
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 1.8e-22 110.2 119 54.6
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 6.8e-22 108.2 121 52.9
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 8.9e-22 107.8 121 51.2
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 4.4e-21 105.5 121 50.4
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 1.3e-20 104.0 121 49.6
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 1.7e-20 103.6 115 52.2
Thhalv10019564m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 5.0e-17 92.0 63 76.2
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 1.5e-13 80.5 117 35.9
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 7.5e-13 78.2 116 37.1
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 3.7e-12 75.9 148 32.4
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 3.7e-12 75.9 116 34.5
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 1.4e-11 73.9 131 38.2
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 3.2e-11 72.8 129 34.9
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 3.2e-11 72.8 111 41.4
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 3.2e-11 72.8 128 37.5
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 3.2e-11 72.8 111 41.4
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 3.2e-11 72.8 111 41.4
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 3.2e-11 72.8 127 33.1
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 4.1e-11 72.4 145 35.2
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 5.4e-11 72.0 124 37.9
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 5.4e-11 72.0 128 37.5
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 9.2e-11 71.2 117 32.5
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 9.2e-11 71.2 117 32.5
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 9.2e-11 71.2 117 32.5
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 9.2e-11 71.2 119 37.8
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 1.2e-10 70.9 111 39.6
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 2.0e-10 70.1 128 35.9
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 2.0e-10 70.1 111 37.8
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 2.0e-10 70.1 117 32.5
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 2.7e-10 69.7 128 35.9
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 2.7e-10 69.7 111 38.7
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 2.7e-10 69.7 141 33.3
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 3.5e-10 69.3 126 35.7
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 3.5e-10 69.3 128 35.9
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 4.6e-10 68.9 115 37.4
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 6.0e-10 68.6 131 35.9
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 6.0e-10 68.6 122 36.9
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 7.8e-10 68.2 128 35.9
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 7.8e-10 68.2 125 36.0
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 7.8e-10 68.2 108 37.0
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.0e-09 67.8 121 37.2
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 1.0e-09 67.8 121 37.2
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 1.0e-09 67.8 113 33.6
BcaC08g43155 Brassica carinata HOM05D007408 ORTHO05D009325 2.3e-09 66.6 103 44.7
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 3.9e-09 65.9 111 38.7
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 3.9e-09 65.9 125 32.0
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 8.6e-09 64.7 119 34.5
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 8.6e-09 64.7 118 33.1
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 8.6e-09 64.7 133 34.6
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 1.1e-08 64.3 129 33.3
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 1.1e-08 64.3 109 34.9
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 1.5e-08 63.9 119 36.1
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 1.5e-08 63.9 112 34.8
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 1.5e-08 63.9 115 33.9
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 1.9e-08 63.5 123 34.1
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 1.9e-08 63.5 121 33.9
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 1.9e-08 63.5 116 32.8
BolC5t31202H Brassica oleracea HOM05D000085 ORTHO05D000274 3.3e-08 62.8 92 44.6
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 3.3e-08 62.8 119 31.1
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 4.3e-08 62.4 128 33.6
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 4.3e-08 62.4 109 37.6
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 4.3e-08 62.4 109 37.6
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 5.6e-08 62.0 141 29.1
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 7.3e-08 61.6 122 32.8
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 7.3e-08 61.6 142 31.7
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 9.5e-08 61.2 121 35.5
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 1.2e-07 60.8 146 26.0
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 1.6e-07 60.5 118 33.9
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 2.1e-07 60.1 112 34.8
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 2.1e-07 60.1 121 31.4
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 2.1e-07 60.1 114 31.6
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 2.8e-07 59.7 120 30.0
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 2.3e-06 56.6 122 29.5
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 8.9e-06 54.7 143 26.6


User provided reference genes

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