Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45942 Brassica carinata HOM05D012012 ORTHO05D013530 5.3e-47 190.7 95 100.0
C06p37370 Brassica napus HOM05D012012 ORTHO05D013530 5.3e-47 190.7 95 100.0
BolC6t38839H Brassica oleracea HOM05D012012 ORTHO05D013530 7.7e-46 186.8 95 98.9
A07p31820 Brassica napus HOM05D012012 ORTHO05D013530 1.8e-34 149.1 76 94.7
BraA07t30809Z Brassica rapa HOM05D012012 ORTHO05D013530 1.8e-34 149.1 76 94.7
BraA07t30811Z Brassica rapa HOM05D012012 ORTHO05D013530 4.4e-33 144.4 90 78.9
A07p31830 Brassica napus HOM05D012012 ORTHO05D013530 1.8e-31 139.0 90 76.7
C06p37390 Brassica napus HOM05D012012 ORTHO05D013530 2.9e-29 131.7 104 69.2
BolC6t38841H Brassica oleracea HOM05D012012 ORTHO05D013530 8.5e-29 130.2 104 68.3
BcaC08g45940 Brassica carinata HOM05D012012 ORTHO05D013530 4.2e-28 127.9 99 70.7
BcaNung06173 Brassica carinata HOM05D012012 ORTHO05D013530 8.0e-27 123.6 83 78.3
BraA03t11947Z Brassica rapa HOM05D012012 ORTHO05D013530 4.4e-25 117.9 82 73.2
Sp4g00800 Schrenkiella parvula HOM05D003095 ORTHO05D003517 2.8e-24 115.2 88 69.3
Thhalv10000397m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 3.4e-17 91.7 62 69.4
AT2G21640 Arabidopsis thaliana HOM05D003095 ORTHO05D003517 1.7e-16 89.4 94 47.9
A09p58070 Brassica napus HOM05D003095 ORTHO05D003517 1.8e-15 85.9 91 52.7
BraA09t41195Z Brassica rapa HOM05D003095 ORTHO05D003517 1.8e-15 85.9 91 52.7
BcaB08g34990 Brassica carinata HOM05D003095 ORTHO05D003517 4.1e-15 84.7 57 70.2
BcaC07g41130 Brassica carinata HOM05D001159 ORTHO05D001712 4.1e-15 84.7 90 52.2
BolC8t51695H Brassica oleracea HOM05D001159 ORTHO05D001712 4.1e-15 84.7 90 52.2
AL4G10840 Arabidopsis lyrata HOM05D003095 ORTHO05D003517 9.1e-15 83.6 95 47.4
C08p41320 Brassica napus HOM05D003095 ORTHO05D003517 4.5e-14 81.3 91 49.5
Carub.0004s0067 Capsella rubella HOM05D003095 ORTHO05D003517 2.9e-13 78.6 94 43.6
C03p32890 Brassica napus HOM05D012012 ORTHO05D013530 1.5e-12 76.3 45 77.8
CSS0033942 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 3.2e-12 75.1 98 44.9
CARHR112630 Cardamine hirsuta HOM05D003095 ORTHO05D003517 1.6e-11 72.8 76 46.1
THA.LOC104804132 Tarenaya hassleriana HOM05D003095 ORTHO05D003517 1.5e-09 66.2 94 44.7
Lalb_Chr25g0280921 Lupinus albus HOM05D003095 ORTHO05D003517 2.0e-09 65.9 97 43.3
Phvul.007G250700 Phaseolus vulgaris HOM05D003095 ORTHO05D003517 2.0e-09 65.9 94 41.5
Lj4g0025197 Lotus japonicus HOM05D003095 ORTHO05D003517 5.7e-09 64.3 94 41.5
MD10G1075100 Malus domestica HOM05D003095 ORTHO05D003517 7.5e-09 63.9 95 44.2
Manes.17G101700 Manihot esculenta HOM05D003095 ORTHO05D003517 1.7e-08 62.8 94 39.4
Glyma.02G157900 Glycine max HOM05D003095 ORTHO05D003517 2.2e-08 62.4 94 43.6
Ciclev10023076m.g Citrus clementina HOM05D003095 ORTHO05D003517 3.7e-08 61.6 94 40.4
Psat5g223200 Pisum sativum HOM05D003095 ORTHO05D003517 3.7e-08 61.6 62 48.4
arahy.Tifrunner.gnm1.ann1.86RK4S Arachis hypogaea HOM05D003095 ORTHO05D003517 4.9e-08 61.2 65 53.8
arahy.Tifrunner.gnm1.ann1.PX0JLD Arachis hypogaea HOM05D003095 ORTHO05D003517 4.9e-08 61.2 65 53.8
Gohir.A13G009200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 4.9e-08 61.2 62 53.2
Gorai.013G010600 Gossypium raimondii HOM05D003095 ORTHO05D003517 4.9e-08 61.2 87 44.8
Prupe.8G064900 Prunus persica HOM05D003095 ORTHO05D003517 4.9e-08 61.2 97 40.2
Prupe.8G096200 Prunus persica HOM05D003095 ORTHO05D003517 4.9e-08 61.2 97 39.2
C05p61660 Brassica napus HOM05D003095 ORTHO05D003517 6.3e-08 60.8 94 40.4
Ca_14242_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 6.3e-08 60.8 94 40.4
LjContig00049g0022514 Lotus japonicus HOM05D003095 ORTHO05D003517 6.3e-08 60.8 94 40.4
Thecc.01G149400 Theobroma cacao HOM05D003095 ORTHO05D003517 6.3e-08 60.8 97 40.2
Thhalv10026620m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 8.3e-08 60.5 94 41.5
FvH4_4g27401 Fragaria vesca HOM05D003095 ORTHO05D003517 8.3e-08 60.5 104 37.5
Glyma.06G309100 Glycine max HOM05D003095 ORTHO05D003517 8.3e-08 60.5 97 42.3
Gohir.A13G067200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 8.3e-08 60.5 65 49.2
Gohir.D13G009900 Gossypium hirsutum HOM05D003095 ORTHO05D003517 8.3e-08 60.5 62 53.2
arahy.Tifrunner.gnm1.ann1.RU14FQ Arachis hypogaea HOM05D003095 ORTHO05D003517 1.1e-07 60.1 94 40.4
BcaC05g30110 Brassica carinata HOM05D003095 ORTHO05D003517 1.4e-07 59.7 94 39.4
FAN24G2144 Fragaria x ananassa HOM05D003095 ORTHO05D003517 1.4e-07 59.7 87 40.2
Atru.chr5.3024 Acer truncatum HOM05D003095 ORTHO05D003517 1.8e-07 59.3 97 37.1
Nitab4.5_0003811g0120 Nicotiana tabacum HOM05D003095 ORTHO05D003517 1.8e-07 59.3 94 37.2
RcHm_v2.0_Chr6g0264531 Rosa chinensis HOM05D003095 ORTHO05D003517 1.8e-07 59.3 87 40.2
BcaC05g30157 Brassica carinata HOM05D003095 ORTHO05D003517 2.4e-07 58.9 94 39.4
Medtr3g013450 Medicago truncatula HOM05D003095 ORTHO05D003517 2.4e-07 58.9 94 39.4
Nitab4.5_0011729g0020 Nicotiana tabacum HOM05D003095 ORTHO05D003517 2.4e-07 58.9 97 37.1
PSO700G0195 Papaver somniferum HOM05D003095 ORTHO05D003517 2.4e-07 58.9 73 42.5
arahy.Tifrunner.gnm1.ann1.7U3W9V Arachis hypogaea HOM05D003095 ORTHO05D003517 3.1e-07 58.5 97 40.2
CARHR247460 Cardamine hirsuta HOM05D003095 ORTHO05D003517 3.1e-07 58.5 94 40.4
Duzib264G0230 Durio zibethinus HOM05D003095 ORTHO05D003517 3.1e-07 58.5 88 40.9
MBI05_g05282_MAGBIO Magnolia biondii HOM05D003095 ORTHO05D003517 3.1e-07 58.5 85 40.0
MD05G1065400 Malus domestica HOM05D003095 ORTHO05D003517 3.1e-07 58.5 95 41.1
Oeu055590.1 Olea europaea HOM05D003095 ORTHO05D003517 3.1e-07 58.5 97 40.2
QL09p041665 Quercus lobata HOM05D003095 ORTHO05D003517 3.1e-07 58.5 98 38.8
Sopen01g051870 Solanum pennellii HOM05D003095 ORTHO05D003517 3.1e-07 58.5 93 38.7
BraA05t22960Z Brassica rapa HOM05D003095 ORTHO05D003517 4.1e-07 58.2 94 39.4
Peaxi162Scf00016g00073 Petunia axillaris HOM05D003095 ORTHO05D003517 4.1e-07 58.2 97 38.1
Actinidia24323 Actinidia chinensis HOM05D003095 ORTHO05D003517 5.4e-07 57.8 97 40.2
Lalb_Chr19g0128111 Lupinus albus HOM05D003095 ORTHO05D003517 5.4e-07 57.8 94 37.2
Lalb_Chr19g0128121 Lupinus albus HOM05D003095 ORTHO05D003517 5.4e-07 57.8 94 37.2
Oeu055595.1 Olea europaea HOM05D003095 ORTHO05D003517 5.4e-07 57.8 97 38.1
AL7G11210 Arabidopsis lyrata HOM05D003095 ORTHO05D003517 7.0e-07 57.4 94 39.4
BolC5t34824H Brassica oleracea HOM05D003095 ORTHO05D003517 7.0e-07 57.4 94 38.3
Dinv23514 Davidia involucrata HOM05D003095 ORTHO05D003517 7.0e-07 57.4 86 40.7
Aqoxy5G01623 Aquilegia oxysepala HOM05D003095 ORTHO05D003517 9.2e-07 57.0 88 39.8
Ciclev10029652m.g Citrus clementina HOM05D003095 ORTHO05D003517 9.2e-07 57.0 65 47.7
Cc02_g17490 Coffea canephora HOM05D003095 ORTHO05D003517 9.2e-07 57.0 97 39.2
Nitab4.5_0002503g0080 Nicotiana tabacum HOM05D003095 ORTHO05D003517 9.2e-07 57.0 92 39.1
Solyc01g109680.3 Solanum lycopersicum HOM05D003095 ORTHO05D003517 9.2e-07 57.0 93 37.6
TWI31G0443 Tripterygium wilfordii HOM05D003095 ORTHO05D003517 9.2e-07 57.0 97 36.1
BcaNung03882 Brassica carinata HOM05D003095 ORTHO05D003517 1.2e-06 56.6 94 38.3
PGSC0003DMG400000729 Solanum tuberosum HOM05D003095 ORTHO05D003517 1.2e-06 56.6 97 38.1
EL10Ac2g03674 Beta vulgaris HOM05D003095 ORTHO05D003517 1.6e-06 56.2 94 38.3
CAN.G1412.13 Capsicum annuum HOM05D003095 ORTHO05D003517 1.6e-06 56.2 97 36.1
Ca_09914_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 1.6e-06 56.2 85 38.8
Duzib147G0559 Durio zibethinus HOM05D041241 ORTHO05D029106 1.6e-06 56.2 53 45.3
Migut.L00519 Erythranthe guttata HOM05D052693 ORTHO05D013530 1.6e-06 56.2 68 38.2
RcHm_v2.0_Chr4g0435221 Rosa chinensis HOM05D003095 ORTHO05D003517 1.6e-06 56.2 87 41.4
THA.LOC104824821 Tarenaya hassleriana HOM05D003095 ORTHO05D003517 1.6e-06 56.2 94 38.3
GSVIVG01031976001 Vitis vinifera HOM05D003095 ORTHO05D003517 1.6e-06 56.2 65 46.2
Nn5g29621 Nelumbo nucifera HOM05D003095 ORTHO05D003517 2.0e-06 55.8 82 36.6
vmacro17487 Vaccinium macrocarpon HOM05D003095 ORTHO05D003517 2.0e-06 55.8 90 36.7
CANSAT56G0597 Cannabis sativa HOM05D003095 ORTHO05D003517 2.7e-06 55.5 95 35.8
CARHR079980 Cardamine hirsuta HOM05D003095 ORTHO05D003517 2.7e-06 55.5 94 38.3
CDE01G0165 Ceratophyllum demersum HOM05D003095 ORTHO05D003517 2.7e-06 55.5 92 35.9
Nn1g04978 Nelumbo nucifera HOM05D003095 ORTHO05D003517 2.7e-06 55.5 66 45.5
Cfa004991 Carpinus fangiana HOM05D003095 ORTHO05D003517 3.5e-06 55.1 95 37.9
Glyma.04G132300 Glycine max HOM05D003095 ORTHO05D003517 3.5e-06 55.1 65 47.7
Potri.002G057100 Populus trichocarpa HOM05D003095 ORTHO05D003517 3.5e-06 55.1 94 38.3
TAR381G1321 Trochodendron aralioides HOM05D003095 ORTHO05D003517 3.5e-06 55.1 70 44.3
Aa31LG6G16010 Aethionema arabicum HOM05D003095 ORTHO05D003517 4.5e-06 54.7 91 36.3
Haze_01901 Corylus avellana HOM05D003095 ORTHO05D003517 4.5e-06 54.7 95 36.8
Thhalv10021849m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 4.5e-06 54.7 94 37.2
Medtr1g052680 Medicago truncatula HOM05D003095 ORTHO05D003517 4.5e-06 54.7 62 45.2
Nitab4.5_0000308g0180 Nicotiana tabacum HOM05D003095 ORTHO05D003517 4.5e-06 54.7 97 36.1
QL11p043988 Quercus lobata HOM05D003095 ORTHO05D003517 4.5e-06 54.7 95 36.8
Sabra04G0103300 Salix brachista HOM05D003095 ORTHO05D003517 4.5e-06 54.7 97 39.2
Sp7g36600 Schrenkiella parvula HOM05D003095 ORTHO05D003517 4.5e-06 54.7 88 35.2
CsaV3_2G014720 Cucumis sativus L. HOM05D003095 ORTHO05D003517 5.9e-06 54.3 58 48.3
ECA236G4459 Erigeron canadensis HOM05D003095 ORTHO05D003517 5.9e-06 54.3 94 37.2
Gohir.D13G054400 Gossypium hirsutum HOM05D003095 ORTHO05D003517 5.9e-06 54.3 68 42.6
Gorai.013G061200 Gossypium raimondii HOM05D003095 ORTHO05D003517 5.9e-06 54.3 68 42.6
QL10p007071 Quercus lobata HOM05D003095 ORTHO05D003517 5.9e-06 54.3 95 36.8
AUR62011312 Chenopodium quinoa HOM05D003095 ORTHO05D003517 7.8e-06 53.9 93 34.4
Cc07_g09550 Coffea canephora HOM05D012012 ORTHO05D013530 7.8e-06 53.9 76 38.2
Dinv42060 Davidia involucrata HOM05D003095 ORTHO05D003517 7.8e-06 53.9 97 37.1
Lsat_1_v5_gn_5_117800 Lactuca sativa HOM05D003095 ORTHO05D003517 7.8e-06 53.9 56 46.4
QL01p053044 Quercus lobata HOM05D003095 ORTHO05D003517 7.8e-06 53.9 95 36.8
QL01p053074 Quercus lobata HOM05D003095 ORTHO05D003517 7.8e-06 53.9 95 36.8
SalBow3G4023 Salvia bowleyana HOM05D003095 ORTHO05D003517 7.8e-06 53.9 96 38.5


User provided reference genes

Program Settings