Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45919 Brassica carinata HOM05D008249 ORTHO05D010427 1.3e-45 186.0 91 100.0
C06p37200 Brassica napus HOM05D008249 ORTHO05D010427 1.3e-45 186.0 91 100.0
BolC6t38825H Brassica oleracea HOM05D008249 ORTHO05D010427 7.6e-43 176.8 91 95.6
BcaB03g15456 Brassica carinata HOM05D008249 ORTHO05D010427 4.6e-40 167.5 91 90.1
BraA07t30800Z Brassica rapa HOM05D008249 ORTHO05D010427 7.9e-40 166.8 91 91.2
A07p31730 Brassica napus HOM05D008249 ORTHO05D010427 3.9e-39 164.5 91 90.1
AL2G28100 Arabidopsis lyrata HOM05D008249 ORTHO05D010427 1.2e-35 152.9 95 82.1
AT1G69050 Arabidopsis thaliana HOM05D008249 ORTHO05D010427 3.4e-35 151.4 95 81.1
Thhalv10019523m.g Eutrema salsugineum HOM05D008249 ORTHO05D010427 4.9e-34 147.5 96 80.2
A02p15590 Brassica napus HOM05D008249 ORTHO05D010427 8.4e-34 146.7 95 80.0
C02p25760 Brassica napus HOM05D008249 ORTHO05D010427 8.4e-34 146.7 95 80.0
BolC2t08645H Brassica oleracea HOM05D008249 ORTHO05D010427 8.4e-34 146.7 95 80.0
BraA02t06620Z Brassica rapa HOM05D008249 ORTHO05D010427 8.4e-34 146.7 95 80.0
Carub.0002s1567 Capsella rubella HOM05D008249 ORTHO05D010427 3.9e-31 137.9 91 81.3
BcaC08g46348 Brassica carinata HOM05D008249 ORTHO05D010427 6.7e-31 137.1 96 76.0
BcaC08g46347 Brassica carinata HOM05D008249 ORTHO05D010427 1.1e-30 136.3 95 76.8
BolC6t39354H Brassica oleracea HOM05D008249 ORTHO05D010427 1.1e-30 136.3 95 76.8
A07p35440 Brassica napus HOM05D008249 ORTHO05D010427 1.9e-30 135.6 96 75.0
BraA07t31135Z Brassica rapa HOM05D008249 ORTHO05D010427 2.5e-30 135.2 96 75.0
BcaC03g15029 Brassica carinata HOM05D008249 ORTHO05D010427 1.4e-28 129.4 80 83.8
CARHR061920 Cardamine hirsuta HOM05D008249 ORTHO05D010427 2.0e-27 125.6 100 67.0
Aa31LG4G11760 Aethionema arabicum HOM05D008249 ORTHO05D010427 2.3e-23 112.1 90 64.4
BcaB03g15873 Brassica carinata HOM05D008249 ORTHO05D010427 1.8e-20 102.4 74 73.0
THA.LOC104822892 Tarenaya hassleriana HOM05D008249 ORTHO05D010427 3.1e-20 101.7 96 57.3
THA.LOC109116338 Tarenaya hassleriana HOM05D008249 ORTHO05D010427 1.0e-18 96.7 111 52.3
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 2.1e-16 89.0 47 87.2
Manes.01G024800 Manihot esculenta HOM05D008249 ORTHO05D010427 1.7e-10 69.3 96 46.9
Haze_11870 Corylus avellana HOM05D008249 ORTHO05D010427 1.1e-09 66.6 85 50.6
Potri.008G109150 Populus trichocarpa HOM05D008249 ORTHO05D010427 7.2e-09 63.9 79 48.1
Potri.T139662 Populus trichocarpa HOM05D008249 ORTHO05D010427 7.2e-09 63.9 79 48.1
Manes.05G112900 Manihot esculenta HOM05D008249 ORTHO05D010427 9.4e-09 63.5 92 46.7
RcHm_v2.0_Chr4g0437411 Rosa chinensis HOM05D008249 ORTHO05D010427 3.6e-08 61.6 87 46.0
Potri.010G138700 Populus trichocarpa HOM05D008249 ORTHO05D010427 1.0e-07 60.1 85 44.7
Sabra10G0107000 Salix brachista HOM05D008249 ORTHO05D010427 1.8e-07 59.3 85 44.7
Actinidia13403 Actinidia chinensis HOM05D000485 ORTHO05D000341 3.0e-07 58.5 90 44.4
Ciclev10033881m.g Citrus clementina HOM05D008249 ORTHO05D010427 5.1e-07 57.8 101 43.6
Prupe.1G293000 Prunus persica HOM05D008249 ORTHO05D010427 6.7e-07 57.4 83 48.2
COL.COLO4_27817 Corchorus olitorius HOM05D008249 ORTHO05D010427 8.8e-07 57.0 98 40.8
Thecc.02G323600 Theobroma cacao HOM05D008249 ORTHO05D010427 1.1e-06 56.6 103 39.8
CiPaw.05G122300 Carya illinoinensis HOM05D008249 ORTHO05D010427 1.5e-06 56.2 98 43.9
Gohir.D02G131400 Gossypium hirsutum HOM05D008249 ORTHO05D010427 1.5e-06 56.2 99 40.4
VMungo1215G0100 Vigna mungo HOM05D008249 ORTHO05D010427 1.5e-06 56.2 83 47.0
Gorai.005G147300 Gossypium raimondii HOM05D008249 ORTHO05D010427 2.0e-06 55.8 99 40.4
Glyma.01G064500 Glycine max HOM05D008249 ORTHO05D010427 2.6e-06 55.5 91 40.7
Gohir.A03G106200 Gossypium hirsutum HOM05D008249 ORTHO05D010427 3.3e-06 55.1 93 41.9
Migut.L01167 Erythranthe guttata HOM05D008249 ORTHO05D010427 7.4e-06 53.9 82 47.6
ClCG08G010570 Citrullus lanatus HOM05D008249 ORTHO05D010427 9.7e-06 53.5 99 42.4
CsaV3_6G033860 Cucumis sativus L. HOM05D008249 ORTHO05D010427 9.7e-06 53.5 114 40.4
Glyma.02G122400 Glycine max HOM05D008249 ORTHO05D010427 9.7e-06 53.5 91 38.5
Phvul.003G038500 Phaseolus vulgaris HOM05D008249 ORTHO05D010427 9.7e-06 53.5 85 41.2


User provided reference genes

Program Settings