Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p36330 Brassica napus HOM05D000359 ORTHO05D040417 1.1e-53 213.0 109 100.0
BolC6t38753H Brassica oleracea HOM05D000359 ORTHO05D040417 3.3e-53 211.5 109 99.1
BcaC08g45842 Brassica carinata HOM05D000359 ORTHO05D000251 1.8e-38 162.5 157 61.8
C06p44020 Brassica napus HOM05D000359 ORTHO05D000251 4.8e-28 127.9 182 47.8
BolC6t39475H Brassica oleracea HOM05D000359 ORTHO05D000251 4.8e-28 127.9 182 47.8
BcaC08g46463 Brassica carinata HOM05D000359 ORTHO05D000251 1.1e-27 126.7 182 47.3
A07p36620 Brassica napus HOM05D000359 ORTHO05D000251 1.1e-27 126.7 182 47.3
BraA07t31228Z Brassica rapa HOM05D000359 ORTHO05D000251 1.8e-27 125.9 182 46.7
AL2G29410 Arabidopsis lyrata HOM05D000359 ORTHO05D000251 9.1e-27 123.6 183 44.3
AT1G70140 Arabidopsis thaliana HOM05D000359 ORTHO05D000251 9.1e-27 123.6 184 42.9
Sp5g25250 Schrenkiella parvula HOM05D000359 ORTHO05D000251 2.0e-26 122.5 184 44.6
Thhalv10018164m.g Eutrema salsugineum HOM05D000359 ORTHO05D000251 3.8e-25 118.2 187 43.3
Carub.0002s1682 Capsella rubella HOM05D000359 ORTHO05D000251 1.6e-23 112.8 185 43.2
CARHR063230 Cardamine hirsuta HOM05D000359 ORTHO05D000251 1.6e-23 112.8 186 41.4
BcaB07g32404 Brassica carinata HOM05D000359 ORTHO05D000251 4.4e-21 104.8 182 39.6
C05p23300 Brassica napus HOM05D000359 ORTHO05D000251 4.4e-21 104.8 182 39.6
Sp1g21500 Schrenkiella parvula HOM05D000359 ORTHO05D000251 5.7e-21 104.4 185 38.9
A09p40730 Brassica napus HOM05D000359 ORTHO05D000251 9.8e-21 103.6 182 39.0
BolC5t31028H Brassica oleracea HOM05D000359 ORTHO05D000251 9.8e-21 103.6 182 39.6
AL1G37980 Arabidopsis lyrata HOM05D000359 ORTHO05D000251 2.2e-20 102.4 185 40.0
BcaC05g26316 Brassica carinata HOM05D000359 ORTHO05D000251 3.7e-20 101.7 182 39.0
Carub.0001s2364 Capsella rubella HOM05D000359 ORTHO05D000251 8.3e-20 100.5 184 38.0
Aa31LG4G10760 Aethionema arabicum HOM05D000359 ORTHO05D000251 2.4e-19 99.0 185 38.9
Thhalv10006885m.g Eutrema salsugineum HOM05D000359 ORTHO05D000251 5.4e-19 97.8 183 37.2
CARHR024530 Cardamine hirsuta HOM05D000359 ORTHO05D000251 7.0e-19 97.4 187 36.9
THA.LOC104822948 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 1.6e-18 96.3 177 39.0
BraA09t39567Z Brassica rapa HOM05D000359 ORTHO05D000251 1.3e-17 93.2 174 37.4
THA.LOC104822066 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 2.3e-14 82.4 175 33.7
Dinv31127 Davidia involucrata HOM05D000359 ORTHO05D000251 2.2e-12 75.9 183 31.7
Sabra10G0000300 Salix brachista HOM05D000359 ORTHO05D000251 2.2e-12 75.9 189 31.7
Sabra10G0028100 Salix brachista HOM05D000359 ORTHO05D000251 2.2e-12 75.9 189 31.7
COL.COLO4_36281 Corchorus olitorius HOM05D000359 ORTHO05D000251 2.9e-12 75.5 176 29.0
Aa31LG7G7910 Aethionema arabicum HOM05D000359 ORTHO05D000251 3.7e-12 75.1 179 31.8
THA.LOC104817062 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 4.9e-12 74.7 184 30.4
Dinv24918 Davidia involucrata HOM05D000359 ORTHO05D000251 8.3e-12 73.9 187 31.6
Cpa.g.sc5.327 Carica papaya HOM05D000359 ORTHO05D000251 1.1e-11 73.6 188 31.4
A03p66040 Brassica napus HOM05D000359 ORTHO05D000251 4.1e-11 71.6 181 31.5
BraA03t15659Z Brassica rapa HOM05D000359 ORTHO05D000251 4.1e-11 71.6 181 31.5
Ciclev10030750m.g Citrus clementina HOM05D000359 ORTHO05D000251 5.4e-11 71.2 183 29.5
Sc04g0008690 Simmondsia chinensis HOM05D000359 ORTHO05D000251 7.0e-11 70.9 60 55.0
AUR62026311 Chenopodium quinoa HOM05D000359 ORTHO05D000251 1.6e-10 69.7 58 55.2
Duzib268G0808 Durio zibethinus HOM05D000359 ORTHO05D000251 1.6e-10 69.7 184 29.3
Eucgr.B02572 Eucalyptus grandis HOM05D000359 ORTHO05D000251 1.6e-10 69.7 59 54.2
Gohir.D02G166900 Gossypium hirsutum HOM05D000359 ORTHO05D000251 1.6e-10 69.7 184 29.3
Gorai.005G187300 Gossypium raimondii HOM05D000359 ORTHO05D000251 2.0e-10 69.3 184 29.9
TWI75G0837 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 2.7e-10 68.9 58 56.9
TAR629G2359 Trochodendron aralioides HOM05D000359 ORTHO05D000251 2.7e-10 68.9 58 56.9
AUR62026506 Chenopodium quinoa HOM05D000359 ORTHO05D000251 3.5e-10 68.6 58 55.2
Sp2g04680 Schrenkiella parvula HOM05D000359 ORTHO05D000251 3.5e-10 68.6 191 29.3
MD13G1085100 Malus domestica HOM05D000359 ORTHO05D000251 4.6e-10 68.2 187 27.8
MD16G1084300 Malus domestica HOM05D000359 ORTHO05D000251 4.6e-10 68.2 57 56.1
Duzib248G0793 Durio zibethinus HOM05D000359 ORTHO05D000251 6.0e-10 67.8 182 29.1
FAN22G2073 Fragaria x ananassa HOM05D000359 ORTHO05D000251 6.0e-10 67.8 58 55.2
RcHm_v2.0_Chr4g0444841 Rosa chinensis HOM05D000359 ORTHO05D000251 7.8e-10 67.4 57 54.4
CANSAT80G0465 Cannabis sativa HOM05D000359 ORTHO05D000251 1.0e-09 67.0 57 57.9
FAN12G4049 Fragaria x ananassa HOM05D000359 ORTHO05D000251 1.0e-09 67.0 57 56.1
FAN17G0568 Fragaria x ananassa HOM05D000359 ORTHO05D000251 1.0e-09 67.0 191 29.3
Gohir.A03G143800 Gossypium hirsutum HOM05D000359 ORTHO05D000251 1.0e-09 67.0 184 29.3
Potri.010G037900 Populus trichocarpa HOM05D000359 ORTHO05D000251 1.0e-09 67.0 58 56.9
Duzib251G0611 Durio zibethinus HOM05D000359 ORTHO05D000251 1.3e-09 66.6 59 54.2
Thecc.02G239400 Theobroma cacao HOM05D000359 ORTHO05D000251 1.3e-09 66.6 183 29.0
Prupe.1G261700 Prunus persica HOM05D000359 ORTHO05D000251 1.7e-09 66.2 188 27.1
FvH4_4g35240 Fragaria vesca HOM05D000359 ORTHO05D000251 2.3e-09 65.9 190 29.5
Nn3g17043 Nelumbo nucifera HOM05D000359 ORTHO05D000251 2.3e-09 65.9 186 29.6
Aa31LG2G10310 Aethionema arabicum HOM05D000359 ORTHO05D000251 3.0e-09 65.5 58 53.4
AT1G59910 Arabidopsis thaliana HOM05D000359 ORTHO05D000251 3.0e-09 65.5 59 52.5
MSTRG.7856 Avicennia marina HOM05D000359 ORTHO05D000251 3.0e-09 65.5 185 27.6
BcaC02g10677 Brassica carinata HOM05D000359 ORTHO05D000251 3.0e-09 65.5 191 27.7
C05p51380 Brassica napus HOM05D000359 ORTHO05D000251 3.0e-09 65.5 191 27.7
BolC4t24147H Brassica oleracea HOM05D000359 ORTHO05D000251 3.0e-09 65.5 191 27.7
CARHR053180 Cardamine hirsuta HOM05D000359 ORTHO05D000251 3.0e-09 65.5 58 55.2
Thhalv10023300m.g Eutrema salsugineum HOM05D000359 ORTHO05D000251 3.9e-09 65.1 192 29.2
Potri.008G192900 Populus trichocarpa HOM05D000359 ORTHO05D000251 3.9e-09 65.1 58 53.4
Aqoxy3G03145 Aquilegia oxysepala HOM05D000359 ORTHO05D000251 5.0e-09 64.7 57 52.6
BcaC06g31801 Brassica carinata HOM05D000359 ORTHO05D000251 5.0e-09 64.7 58 53.4
C04p26560 Brassica napus HOM05D000359 ORTHO05D000251 5.0e-09 64.7 58 53.4
DCAR_024509 Daucus carota HOM05D000359 ORTHO05D000251 5.0e-09 64.7 182 26.4
Peaxi162Scf00828g00002 Petunia axillaris HOM05D000359 ORTHO05D000251 6.6e-09 64.3 56 55.4
BcaC09g49450 Brassica carinata HOM05D000359 ORTHO05D000251 8.6e-09 63.9 58 53.4
A01p28930 Brassica napus HOM05D000359 ORTHO05D000251 8.6e-09 63.9 58 53.4
BraA01t03012Z Brassica rapa HOM05D000359 ORTHO05D000251 8.6e-09 63.9 58 53.4
Nitab4.5_0002312g0030 Nicotiana tabacum HOM05D000359 ORTHO05D000251 8.6e-09 63.9 56 53.6
Hund05931 Selenicereus undatus HOM05D000359 ORTHO05D000251 8.6e-09 63.9 56 51.8
CSS0040976 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 1.1e-08 63.5 188 27.7
Actinidia14995 Actinidia chinensis HOM05D000359 ORTHO05D000251 1.5e-08 63.2 188 28.7
C01p36610 Brassica napus HOM05D000359 ORTHO05D000251 1.5e-08 63.2 193 29.0
BolC1t03621H Brassica oleracea HOM05D000359 ORTHO05D000251 1.5e-08 63.2 193 29.0
FAN07G0842 Fragaria x ananassa HOM05D000359 ORTHO05D000251 1.5e-08 63.2 58 53.4
GSVIVG01020145001 Vitis vinifera HOM05D000359 ORTHO05D000251 1.5e-08 63.2 186 27.4
CSS0011283 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 1.9e-08 62.8 188 28.7
Nitab4.5_0004119g0030 Nicotiana tabacum HOM05D000359 ORTHO05D000251 1.9e-08 62.8 56 51.8
PGR119G1639 Punica granatum HOM05D000359 ORTHO05D000251 1.9e-08 62.8 57 49.1
HPP92_010823 Vanilla planifolia HOM05D000359 ORTHO05D000251 1.9e-08 62.8 55 50.9
AL2G16830 Arabidopsis lyrata HOM05D000359 ORTHO05D000251 2.5e-08 62.4 59 50.8
QL03p067368 Quercus lobata HOM05D000359 ORTHO05D000251 2.5e-08 62.4 57 56.1
PSO013G0151 Papaver somniferum HOM05D000359 ORTHO05D000251 3.3e-08 62.0 59 50.8
PSO832G4539 Papaver somniferum HOM05D000359 ORTHO05D000251 3.3e-08 62.0 59 50.8
TAR622G0545 Trochodendron aralioides HOM05D000359 ORTHO05D000251 3.3e-08 62.0 54 55.6
BcaB04g20239 Brassica carinata HOM05D000359 ORTHO05D000251 4.3e-08 61.6 195 27.2
Carub.0002s0536 Capsella rubella HOM05D000359 ORTHO05D000251 4.3e-08 61.6 199 26.1
Manes.01G195000 Manihot esculenta HOM05D000359 ORTHO05D000251 4.3e-08 61.6 57 49.1
PGR102G1998 Punica granatum HOM05D000359 ORTHO05D000251 4.3e-08 61.6 58 51.7
HPP92_010510 Vanilla planifolia HOM05D000359 ORTHO05D000251 4.3e-08 61.6 56 50.0
Lj6A799G82 Lonicera japonica HOM05D000359 ORTHO05D000251 5.6e-08 61.2 190 27.4
Oeu041246.1 Olea europaea HOM05D000359 ORTHO05D000251 5.6e-08 61.2 57 49.1
Atru.chr9.2388 Acer truncatum HOM05D000359 ORTHO05D000251 7.3e-08 60.8 59 49.2
SalBow2G2377 Salvia bowleyana HOM05D000359 ORTHO05D000251 7.3e-08 60.8 185 27.0
CAN.G159.5 Capsicum annuum HOM05D000359 ORTHO05D000251 9.5e-08 60.5 56 53.6
CiPaw.06G076500 Carya illinoinensis HOM05D000359 ORTHO05D000251 9.5e-08 60.5 54 59.3
Haze_12121 Corylus avellana HOM05D000359 ORTHO05D000251 1.2e-07 60.1 186 29.6
Cc11_g14040 Coffea canephora HOM05D000359 ORTHO05D000251 1.6e-07 59.7 58 50.0
SalBow2G2438 Salvia bowleyana HOM05D000359 ORTHO05D000251 1.6e-07 59.7 185 26.5
PGSC0003DMG400022639 Solanum tuberosum HOM05D000359 ORTHO05D000251 1.6e-07 59.7 56 53.6
arahy.Tifrunner.gnm1.ann1.TVP250 Arachis hypogaea HOM05D000359 ORTHO05D000251 2.1e-07 59.3 56 50.0
PSO339G0603 Papaver somniferum HOM05D000359 ORTHO05D000251 2.1e-07 59.3 59 49.2
VMungo1215G1924 Vigna mungo HOM05D000359 ORTHO05D000251 2.1e-07 59.3 58 46.6
arahy.Tifrunner.gnm1.ann1.27P2MY Arachis hypogaea HOM05D000359 ORTHO05D000251 2.8e-07 58.9 56 48.2
Ciclev10003590m.g Citrus clementina HOM05D000359 ORTHO05D000251 2.8e-07 58.9 58 50.0
MSTRG.642 Avicennia marina HOM05D000359 ORTHO05D000251 3.6e-07 58.5 59 45.8
EL10Ac6g13109 Beta vulgaris HOM05D000359 ORTHO05D000251 3.6e-07 58.5 52 51.9
Solyc05g006430.3 Solanum lycopersicum HOM05D000359 ORTHO05D000251 3.6e-07 58.5 56 51.8
Sopen05g002360 Solanum pennellii HOM05D000359 ORTHO05D000251 3.6e-07 58.5 56 51.8
Migut.L01383 Erythranthe guttata HOM05D000359 ORTHO05D000251 4.7e-07 58.2 59 45.8
Oeu015864.1 Olea europaea HOM05D000359 ORTHO05D000251 4.7e-07 58.2 55 50.9
Peaxi162Scf00017g02231 Petunia axillaris HOM05D000359 ORTHO05D000251 4.7e-07 58.2 55 52.7
Sed0001042 Sechium edule HOM05D000359 ORTHO05D000251 4.7e-07 58.2 58 50.0
Atru.chr11.1932 Acer truncatum HOM05D000359 ORTHO05D000251 6.2e-07 57.8 175 26.9
Cfa009089 Carpinus fangiana HOM05D000359 ORTHO05D000251 6.2e-07 57.8 55 54.5
Cc04_g16220 Coffea canephora HOM05D000938 ORTHO05D001451 6.2e-07 57.8 58 50.0
Zm00001eb254040 Zea mays HOM05D000359 ORTHO05D000251 6.2e-07 57.8 56 48.2
ClCG05G024940 Citrullus lanatus HOM05D000359 ORTHO05D000251 8.0e-07 57.4 57 50.9
MBI19_g26476_MAGBIO Magnolia biondii HOM05D000359 ORTHO05D000251 8.0e-07 57.4 58 53.4
PGSC0003DMG400024577 Solanum tuberosum HOM05D000359 ORTHO05D000251 8.0e-07 57.4 55 52.7
MSTRG.23073 Avicennia marina HOM05D000359 ORTHO05D000251 1.1e-06 57.0 58 46.6
Solyc03g113710.4 Solanum lycopersicum HOM05D000359 ORTHO05D000251 1.1e-06 57.0 55 52.7
Sopen03g032760 Solanum pennellii HOM05D000359 ORTHO05D000251 1.1e-06 57.0 55 52.7
Actinidia19073 Actinidia chinensis HOM05D000359 ORTHO05D000251 1.4e-06 56.6 55 49.1
Lj9A455T52 Lonicera japonica HOM05D000359 ORTHO05D000251 1.4e-06 56.6 58 46.6
Lj2g0001519 Lotus japonicus HOM05D000359 ORTHO05D000251 1.4e-06 56.6 59 45.8
Nitab4.5_0000642g0260 Nicotiana tabacum HOM05D000359 ORTHO05D000251 1.4e-06 56.6 55 54.5
Rhsim12G0126100 Rhododendron simsii HOM05D000359 ORTHO05D000251 1.4e-06 56.6 188 28.7
vmacro16292 Vaccinium macrocarpon HOM05D000359 ORTHO05D000251 1.4e-06 56.6 164 28.7
GSVIVG01011372001 Vitis vinifera HOM05D000359 ORTHO05D000251 1.4e-06 56.6 59 40.7
MELO3C012032.2 Cucumis melo HOM05D000359 ORTHO05D000251 1.8e-06 56.2 57 47.4
CsaV3_5G031960 Cucumis sativus L. HOM05D000359 ORTHO05D000251 1.8e-06 56.2 57 47.4
Eucgr.B03375 Eucalyptus grandis HOM05D000359 ORTHO05D000251 1.8e-06 56.2 44 59.1
Lj4g0015951 Lotus japonicus HOM05D000359 ORTHO05D000251 1.8e-06 56.2 55 47.3
Nn4g22942 Nelumbo nucifera HOM05D000359 ORTHO05D000251 1.8e-06 56.2 186 28.0
CSS0003753 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 2.3e-06 55.8 57 49.1
QL10p013708 Quercus lobata HOM05D000359 ORTHO05D000251 2.3e-06 55.8 57 47.4
HPP92_017049 Vanilla planifolia HOM05D000359 ORTHO05D000251 2.3e-06 55.8 58 44.8
Ah.02g131760 Amaranthus hybridus HOM05D000359 ORTHO05D000251 3.1e-06 55.5 51 51.0
Ciclev10000326m.g Citrus clementina HOM05D000938 ORTHO05D001451 3.1e-06 55.5 58 48.3
ECA246G3069 Erigeron canadensis HOM05D000359 ORTHO05D000251 3.1e-06 55.5 52 48.1
Hma1.2p1_0265F.1_g106280 Hydrangea macrophylla HOM05D000359 ORTHO05D000251 3.1e-06 55.5 55 49.1
Lalb_Chr05g0230081 Lupinus albus HOM05D000359 ORTHO05D000251 3.1e-06 55.5 58 44.8
Nitab4.5_0003694g0050 Nicotiana tabacum HOM05D000359 ORTHO05D000251 3.1e-06 55.5 55 52.7
SGA_v2.0_scaffold8G04281 Striga asiatica HOM05D000359 ORTHO05D000251 3.1e-06 55.5 58 39.7
Ca_24167_v3 Cicer arietinum L. HOM05D000359 ORTHO05D000251 4.0e-06 55.1 58 48.3
Psat2g114160 Pisum sativum HOM05D000359 ORTHO05D000251 4.0e-06 55.1 58 46.6
CAN.G853.30 Capsicum annuum HOM05D000359 ORTHO05D000251 5.2e-06 54.7 55 47.3
ECA233G2597 Erigeron canadensis HOM05D000359 ORTHO05D000251 5.2e-06 54.7 40 60.0
Glyma.02G027200 Glycine max HOM05D000359 ORTHO05D000251 5.2e-06 54.7 59 40.7
Phvul.002G077100 Phaseolus vulgaris HOM05D000359 ORTHO05D000251 5.2e-06 54.7 58 43.1
TPR.G17323 Trifolium pratense HOM05D000359 ORTHO05D000251 5.2e-06 54.7 58 44.8
TPR.G29736 Trifolium pratense HOM05D000359 ORTHO05D000251 5.2e-06 54.7 59 42.4
CSS0042814 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 6.8e-06 54.3 55 49.1
CANSAT80G1549 Cannabis sativa HOM05D000359 ORTHO05D000251 6.8e-06 54.3 58 50.0
Lsat_1_v5_gn_3_49441 Lactuca sativa HOM05D000359 ORTHO05D000251 6.8e-06 54.3 52 48.1
Cpa.g.sc35.22 Carica papaya HOM05D000359 ORTHO05D000251 8.9e-06 53.9 58 43.1
unitig_22.g6483 Utricularia gibba HOM05D000359 ORTHO05D000251 8.9e-06 53.9 181 26.5


User provided reference genes

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