Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 3.0e-36 154.5 68 100.0
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 8.8e-12 73.2 51 68.6
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.2e-11 72.8 51 66.7
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.2e-11 72.8 51 66.7
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.5e-11 72.4 51 66.7
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 2.6e-11 71.6 51 66.7
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 2.6e-11 71.6 58 65.5
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 4.4e-11 70.9 51 66.7
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 5.7e-11 70.5 51 66.7
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.3e-10 69.3 50 64.0
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 1.3e-10 69.3 50 64.0
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.3e-10 69.3 50 64.0
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.3e-10 69.3 50 64.0
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 1.3e-10 69.3 50 64.0
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 6.3e-10 67.0 50 60.0
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.8e-09 65.5 50 60.0
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 1.8e-09 65.5 50 60.0
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 3.1e-09 64.7 50 60.0
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 5.4e-09 63.9 50 62.0
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 7.0e-09 63.5 50 58.0
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.1e-09 63.2 50 58.0
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.1e-09 63.2 50 58.0
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 9.1e-09 63.2 50 58.0
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 1.2e-08 62.8 51 60.8
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.2e-08 62.8 50 58.0
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.2e-08 62.8 50 58.0
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 1.2e-08 62.8 50 58.0
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.2e-08 62.8 51 58.8
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 1.6e-08 62.4 46 65.2
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.6e-08 62.4 46 63.0
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 2.0e-08 62.0 46 63.0
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 2.0e-08 62.0 46 60.9
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 2.0e-08 62.0 51 60.8
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 2.7e-08 61.6 46 63.0
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 2.7e-08 61.6 46 63.0
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 3.5e-08 61.2 46 63.0
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 3.5e-08 61.2 50 56.0
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 4.5e-08 60.8 45 64.4
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 5.9e-08 60.5 51 56.9
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 5.9e-08 60.5 46 63.0
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 5.9e-08 60.5 55 60.0
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 5.9e-08 60.5 50 58.0
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 7.7e-08 60.1 51 52.9
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 7.7e-08 60.1 50 56.0
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.0e-07 59.7 50 56.0
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.0e-07 59.7 46 58.7
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.3e-07 59.3 50 58.0
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.3e-07 59.3 50 56.0
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 1.7e-07 58.9 50 52.0
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 2.3e-07 58.5 56 50.0
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.9e-07 58.2 51 52.9
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 3.8e-07 57.8 51 56.9
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 5.0e-07 57.4 51 52.9
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 5.0e-07 57.4 46 58.7
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 5.0e-07 57.4 50 52.0
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 6.6e-07 57.0 50 54.0
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 8.6e-07 56.6 51 54.9
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 8.6e-07 56.6 53 50.9
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.1e-06 56.2 46 50.0
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 1.1e-06 56.2 46 50.0
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.1e-06 56.2 51 54.9
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.1e-06 56.2 51 54.9
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.5e-06 55.8 51 54.9
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.9e-06 55.5 50 54.0
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.9e-06 55.5 51 58.8
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 1.9e-06 55.5 33 66.7
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 1.9e-06 55.5 51 52.9
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 1.9e-06 55.5 50 52.0
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.9e-06 55.5 50 50.0
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 1.9e-06 55.5 51 54.9
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.9e-06 55.5 45 60.0
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 1.9e-06 55.5 51 58.8
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 2.5e-06 55.1 50 56.0
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 2.5e-06 55.1 50 54.0
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 2.5e-06 55.1 50 50.0
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.5e-06 55.1 50 50.0
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.5e-06 55.1 50 50.0
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.5e-06 55.1 50 50.0
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 3.3e-06 54.7 50 56.0
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 3.3e-06 54.7 44 56.8
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 4.2e-06 54.3 49 55.1
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 5.5e-06 53.9 51 47.1
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 7.2e-06 53.5 33 63.6
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 9.5e-06 53.1 45 57.8


User provided reference genes

Program Settings