Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 3.3e-57 224.9 123 100.0
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 1.5e-49 199.5 111 98.2
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 5.6e-41 171.0 100 95.0
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 2.1e-32 142.5 104 81.7
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 2.8e-32 142.1 103 84.5
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 2.8e-32 142.1 103 84.5
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 3.7e-32 141.7 105 84.8
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 5.3e-31 137.9 104 81.7
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 5.8e-30 134.4 104 76.9
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 3.8e-29 131.7 104 76.0
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 1.1e-28 130.2 104 76.0
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 1.9e-28 129.4 104 75.0
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 4.2e-28 128.3 102 76.5
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 4.2e-28 128.3 102 76.5
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 7.1e-28 127.5 104 75.0
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 6.0e-27 124.4 102 75.5
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 1.0e-26 123.6 105 73.3
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 1.0e-26 123.6 102 75.5
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 1.5e-22 109.8 83 77.1
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.7e-21 106.3 98 64.3
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 6.1e-19 97.8 100 60.0
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.2e-16 89.4 97 57.7
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.2e-16 89.4 97 57.7
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 4.8e-16 88.2 97 56.7
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 4.8e-16 88.2 100 58.0
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 6.3e-16 87.8 97 54.6
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 8.2e-16 87.4 98 55.1
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.1e-15 87.0 100 54.0
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 1.4e-15 86.7 97 58.8
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 2.4e-15 85.9 97 57.7
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.1e-15 85.5 99 55.6
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 3.1e-15 85.5 101 53.5
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 4.1e-15 85.1 97 58.8
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 4.1e-15 85.1 99 54.5
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 9.1e-15 84.0 100 56.0
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 1.2e-14 83.6 99 54.5
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.2e-14 83.6 99 53.5
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.2e-14 83.6 99 53.5
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 1.2e-14 83.6 103 51.5
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 1.5e-14 83.2 96 54.2
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 3.4e-14 82.0 103 54.4
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 1.7e-13 79.7 107 49.5
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 2.9e-13 79.0 98 56.1
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 2.9e-13 79.0 99 51.5
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 1.1e-12 77.0 104 53.8
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 1.1e-12 77.0 98 51.0
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 1.4e-12 76.6 98 49.0
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.4e-12 76.6 98 56.1
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 1.9e-12 76.3 102 52.9
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 2.5e-12 75.9 76 65.8
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 4.2e-12 75.1 55 74.5
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 7.2e-12 74.3 97 50.5
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 9.4e-12 73.9 95 54.7
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 1.2e-11 73.6 103 49.5
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 1.6e-11 73.2 105 47.6
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 2.1e-11 72.8 99 51.5
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 2.1e-11 72.8 97 51.5
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 4.7e-11 71.6 98 52.0
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 6.1e-11 71.2 97 51.5
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 6.1e-11 71.2 103 47.6
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 7.9e-11 70.9 98 50.0
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 2.3e-10 69.3 104 47.1
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 5.1e-10 68.2 115 42.6
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 6.7e-10 67.8 106 40.6
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 1.1e-09 67.0 97 46.4
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.5e-09 66.6 99 44.4
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 1.5e-09 66.6 105 46.7
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 1.5e-09 66.6 103 45.6
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 2.0e-09 66.2 107 47.7
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 2.6e-09 65.9 105 46.7
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 4.4e-09 65.1 88 52.3
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 4.4e-09 65.1 98 48.0
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 5.7e-09 64.7 107 43.9
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 9.7e-09 63.9 104 48.1
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 1.3e-08 63.5 104 47.1
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.8e-08 62.4 99 47.5
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.7e-08 62.0 100 45.0
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 3.7e-08 62.0 105 44.8
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 6.3e-08 61.2 111 42.3
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 8.2e-08 60.8 103 49.5
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 8.2e-08 60.8 100 42.0
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 8.2e-08 60.8 99 42.4
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 1.4e-07 60.1 99 49.5
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 1.8e-07 59.7 102 45.1
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 1.8e-07 59.7 99 45.5
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 2.4e-07 59.3 100 46.0
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 3.1e-07 58.9 102 47.1
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 3.1e-07 58.9 106 43.4
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 4.1e-07 58.5 101 46.5
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 5.3e-07 58.2 47 66.0
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 7.0e-07 57.8 98 44.9
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 7.0e-07 57.8 41 70.7
Aa31LG4G10590 Aethionema arabicum HOM05D007293 ORTHO05D009143 9.1e-07 57.4 64 62.5
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 9.1e-07 57.4 103 47.6
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 1.2e-06 57.0 75 56.0
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 2.6e-06 55.8 97 42.3
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 3.4e-06 55.5 44 70.5
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 4.5e-06 55.1 92 44.6
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 4.5e-06 55.1 105 45.7
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 4.5e-06 55.1 42 69.0
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 4.5e-06 55.1 59 50.8
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 5.9e-06 54.7 102 41.2
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 7.7e-06 54.3 57 50.9
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 7.7e-06 54.3 57 50.9


User provided reference genes

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