Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p35210 Brassica napus HOM05D006270 ORTHO05D007755 9.1e-139 496.9 250 100.0
BcaC08g45741 Brassica carinata HOM05D006270 ORTHO05D007755 3.8e-137 491.5 250 98.8
BolC6t38627H Brassica oleracea HOM05D006270 ORTHO05D007755 3.8e-137 491.5 250 98.8
BraA07t30681Z Brassica rapa HOM05D006270 ORTHO05D007755 1.3e-132 476.5 250 96.0
A07p30450 Brassica napus HOM05D006270 ORTHO05D007755 6.3e-132 474.2 250 95.6
BcaB03g15641 Brassica carinata HOM05D006270 ORTHO05D007755 7.2e-128 460.7 250 93.6
Sp5g27100 Schrenkiella parvula HOM05D006270 ORTHO05D007755 1.1e-123 446.8 257 88.3
Thhalv10019029m.g Eutrema salsugineum HOM05D006270 ORTHO05D007755 7.0e-123 444.1 257 87.5
CARHR064850 Cardamine hirsuta HOM05D006270 ORTHO05D007755 1.2e-117 426.8 258 84.5
AT1G72030 Arabidopsis thaliana HOM05D006270 ORTHO05D007755 1.3e-116 423.3 257 84.4
AL2G31660 Arabidopsis lyrata HOM05D006270 ORTHO05D007755 1.8e-115 419.5 258 84.5
Carub.0002s1881 Capsella rubella HOM05D006270 ORTHO05D007755 8.9e-110 400.6 252 82.1
Aa31LG4G10780 Aethionema arabicum HOM05D006270 ORTHO05D007755 4.0e-102 375.2 258 75.2
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 1.2e-85 320.5 252 65.1
Glyma.08G240100 Glycine max HOM05D006270 ORTHO05D007755 1.2e-66 257.3 223 58.3
TAR628G1531 Trochodendron aralioides HOM05D006270 ORTHO05D007755 2.1e-66 256.5 194 64.9
Phvul.011G002300 Phaseolus vulgaris HOM05D006270 ORTHO05D007755 7.9e-66 254.6 201 61.2
Ciclev10021647m.g Citrus clementina HOM05D006270 ORTHO05D007755 1.0e-65 254.2 202 63.4
Thecc.03G315400 Theobroma cacao HOM05D006270 ORTHO05D007755 1.0e-65 254.2 193 65.3
Gohir.D08G172100 Gossypium hirsutum HOM05D006270 ORTHO05D007755 1.8e-65 253.4 197 60.9
Gorai.004G179400 Gossypium raimondii HOM05D006270 ORTHO05D007755 1.8e-65 253.4 197 60.9
RcHm_v2.0_Chr1g0380911 Rosa chinensis HOM05D006270 ORTHO05D007755 1.8e-65 253.4 197 65.0
Manes.08G135800 Manihot esculenta HOM05D006270 ORTHO05D007755 2.3e-65 253.1 226 58.4
Duzib205G0009 Durio zibethinus HOM05D006270 ORTHO05D007755 3.0e-65 252.7 233 55.8
FAN06G0691 Fragaria x ananassa HOM05D006270 ORTHO05D007755 3.0e-65 252.7 197 65.0
Lj3g0009409 Lotus japonicus HOM05D006270 ORTHO05D007755 3.0e-65 252.7 201 62.7
GSVIVG01026015001 Vitis vinifera HOM05D006270 ORTHO05D007755 3.9e-65 252.3 191 64.4
FAN06G0861 Fragaria x ananassa HOM05D006270 ORTHO05D007755 6.7e-65 251.5 197 64.5
FAN10G0687 Fragaria x ananassa HOM05D006270 ORTHO05D007755 6.7e-65 251.5 197 64.5
Glyma.12G002000 Glycine max HOM05D006270 ORTHO05D007755 6.7e-65 251.5 223 57.8
Potri.005G054600 Populus trichocarpa HOM05D006270 ORTHO05D007755 8.7e-65 251.1 227 56.8
Cc10_g11640 Coffea canephora HOM05D006270 ORTHO05D007755 1.1e-64 250.8 190 63.2
FAN10G3159 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.1e-64 250.8 228 58.3
Gohir.A08G151000 Gossypium hirsutum HOM05D006270 ORTHO05D007755 1.5e-64 250.4 192 60.9
Atru.chr13.2329 Acer truncatum HOM05D006270 ORTHO05D007755 2.5e-64 249.6 195 62.6
Dinv03143 Davidia involucrata HOM05D006270 ORTHO05D007755 2.5e-64 249.6 192 63.0
PGR102G0747 Punica granatum HOM05D006270 ORTHO05D007755 5.6e-64 248.4 211 61.6
VMungo1127G1589 Vigna mungo HOM05D006270 ORTHO05D007755 9.6e-64 247.7 201 60.7
FAN01G1506 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.3e-63 247.3 197 64.0
FAN03G2743 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.1e-63 246.5 197 64.0
QL09p054318 Quercus lobata HOM05D006270 ORTHO05D007755 2.8e-63 246.1 222 58.6
QL09p054436 Quercus lobata HOM05D006270 ORTHO05D007755 2.8e-63 246.1 225 57.8
TPR.G27896 Trifolium pratense HOM05D006270 ORTHO05D007755 2.8e-63 246.1 201 60.7
arahy.Tifrunner.gnm1.ann1.WW5SAZ Arachis hypogaea HOM05D006270 ORTHO05D007755 3.7e-63 245.7 214 58.4
Nitab4.5_0001579g0030 Nicotiana tabacum HOM05D006270 ORTHO05D007755 3.7e-63 245.7 226 55.8
PSO170G6113 Papaver somniferum HOM05D006270 ORTHO05D007755 8.1e-63 244.6 206 59.2
arahy.Tifrunner.gnm1.ann1.3FR1H5 Arachis hypogaea HOM05D006270 ORTHO05D007755 1.1e-62 244.2 214 58.4
Sc23g0001640 Simmondsia chinensis HOM05D006270 ORTHO05D007755 1.4e-62 243.8 195 61.5
Actinidia23030 Actinidia chinensis HOM05D006270 ORTHO05D007755 1.8e-62 243.4 200 60.5
Haze_18335 Corylus avellana HOM05D006270 ORTHO05D007755 1.8e-62 243.4 195 63.6
ECA232G4580 Erigeron canadensis HOM05D006270 ORTHO05D007755 4.0e-62 242.3 193 60.6
Nitab4.5_0000167g0160 Nicotiana tabacum HOM05D006270 ORTHO05D007755 5.3e-62 241.9 196 60.7
SGA_v2.0_scaffold24G10562 Striga asiatica HOM05D006270 ORTHO05D007755 6.9e-62 241.5 192 62.0
PSO782G5577 Papaver somniferum HOM05D006270 ORTHO05D007755 9.0e-62 241.1 206 58.7
Lalb_Chr01g0000131 Lupinus albus HOM05D006270 ORTHO05D007755 1.2e-61 240.7 206 58.3
Migut.C01268 Erythranthe guttata HOM05D006270 ORTHO05D007755 1.5e-61 240.4 211 58.3
Eucgr.F02983 Eucalyptus grandis HOM05D006270 ORTHO05D007755 1.5e-61 240.4 228 57.0
TWI59G0231 Tripterygium wilfordii HOM05D006270 ORTHO05D007755 2.0e-61 240.0 214 56.1
Cfa017859 Carpinus fangiana HOM05D006270 ORTHO05D007755 3.4e-61 239.2 193 62.7
Cpa.g.sc66.22 Carica papaya HOM05D006270 ORTHO05D007755 4.5e-61 238.8 221 53.4
PGSC0003DMG400014297 Solanum tuberosum HOM05D006270 ORTHO05D007755 4.5e-61 238.8 243 51.4
Rhsim12G0005700 Rhododendron simsii HOM05D006270 ORTHO05D007755 5.8e-61 238.4 193 61.1
AUR62023526 Chenopodium quinoa HOM05D006270 ORTHO05D007755 1.0e-60 237.7 204 57.8
Psat7g147160 Pisum sativum HOM05D006270 ORTHO05D007755 1.0e-60 237.7 201 59.7
HanXRQChr05g0147941 Helianthus annuus HOM05D006270 ORTHO05D007755 4.9e-60 235.3 191 60.7
Aqoxy6G00085 Aquilegia oxysepala HOM05D006270 ORTHO05D007755 6.5e-60 235.0 203 58.1
CAN.G307.5 Capsicum annuum HOM05D006270 ORTHO05D007755 1.9e-59 233.4 222 54.1
Sabra05G0047500 Salix brachista HOM05D006270 ORTHO05D007755 2.5e-59 233.0 236 53.0
Sopen03g004530 Solanum pennellii HOM05D006270 ORTHO05D007755 2.5e-59 233.0 243 50.2
Oeu032990.1 Olea europaea HOM05D006270 ORTHO05D007755 3.2e-59 232.6 192 60.4
EL10Ac1g00156 Beta vulgaris HOM05D006270 ORTHO05D007755 4.2e-59 232.3 202 58.4
vmacro00974 Vaccinium macrocarpon HOM05D006270 ORTHO05D007755 7.1e-59 231.5 201 58.2
ATR1136G034 Amborella trichopoda HOM05D006270 ORTHO05D007755 9.3e-59 231.1 203 58.6
Peaxi162Scf01013g00026 Petunia axillaris HOM05D006270 ORTHO05D007755 9.3e-59 231.1 193 58.0
Solyc03g025710.3 Solanum lycopersicum HOM05D006270 ORTHO05D007755 1.6e-58 230.3 225 53.8
SalBow7G0089 Salvia bowleyana HOM05D006270 ORTHO05D007755 2.7e-58 229.6 196 58.2
MSTRG.25449 Avicennia marina HOM05D006270 ORTHO05D007755 6.0e-58 228.4 206 57.3
DCAR_028408 Daucus carota HOM05D006270 ORTHO05D007755 1.1e-56 224.2 202 57.4
Lsat_1_v5_gn_0_7900 Lactuca sativa HOM05D006270 ORTHO05D007755 1.5e-56 223.8 243 49.4
ClCG09G010100 Citrullus lanatus HOM05D006270 ORTHO05D007755 1.9e-56 223.4 230 52.6
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 5.7e-56 221.9 197 58.4
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 5.7e-56 221.9 196 57.1
Sed0023542 Sechium edule HOM05D006270 ORTHO05D007755 7.4e-56 221.5 213 54.0
COL.COLO4_16875 Corchorus olitorius HOM05D006270 ORTHO05D007755 6.3e-55 218.4 157 65.0
SEGI_40158 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 6.3e-55 218.4 223 51.1
CsaV3_7G024750 Cucumis sativus L. HOM05D006270 ORTHO05D007755 2.4e-54 216.5 219 51.6
HPP92_002765 Vanilla planifolia HOM05D006270 ORTHO05D007755 4.1e-54 215.7 199 56.3
Nitab4.5_0001579g0080 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.0e-53 213.4 225 51.6
Nitab4.5_0000167g0150 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.6e-53 213.0 229 50.2
unitig_8.g2905 Utricularia gibba HOM05D006270 ORTHO05D007755 4.5e-53 212.2 195 53.3
Pp3c3_19510 Physcomitrium patens HOM05D006270 ORTHO05D007755 3.2e-51 206.1 194 53.1
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 7.9e-50 201.4 195 51.3
Nn5g27482 Nelumbo nucifera HOM05D006270 ORTHO05D007755 2.5e-48 196.4 167 59.9
CAN.G1280.16 Capsicum annuum HOM05D006270 ORTHO05D007755 1.6e-47 193.7 224 49.1
Ca_19683_v3 Cicer arietinum L. HOM05D006270 ORTHO05D007755 4.8e-47 192.2 145 64.8
CiPaw.16G073500 Carya illinoinensis HOM05D006270 ORTHO05D007755 8.2e-47 191.4 245 46.9
PGSC0003DMG400007305 Solanum tuberosum HOM05D006270 ORTHO05D007755 1.0e-44 184.5 228 44.3
Lj7A621T38 Lonicera japonica HOM05D006270 ORTHO05D007755 4.2e-43 179.1 146 59.6
PGSC0003DMG400034528 Solanum tuberosum HOM05D006270 ORTHO05D007755 7.9e-42 174.9 214 43.5
Sopen11g010160 Solanum pennellii HOM05D006270 ORTHO05D007755 1.8e-41 173.7 186 46.8
BcaC08g45742 Brassica carinata HOM05D006270 ORTHO05D007755 3.0e-41 172.9 101 87.1
Mapoly0148s0033 Marchantia polymorpha HOM05D006270 ORTHO05D007755 8.2e-39 164.9 187 44.9
Zm00001eb304740 Zea mays HOM05D006270 ORTHO05D007755 2.7e-34 149.8 124 60.5
Prupe.2G311100 Prunus persica HOM05D006270 ORTHO05D007755 6.1e-34 148.7 127 61.4
FvH4_7g31720 Fragaria vesca HOM05D006270 ORTHO05D007755 7.9e-34 148.3 127 61.4
CSS0031567 Camellia sinensis var. sinensis HOM05D006270 ORTHO05D007755 9.7e-32 141.4 152 52.0
MBI06_g06704_MAGBIO Magnolia biondii HOM05D006270 ORTHO05D007755 3.7e-31 139.4 144 52.8
SEGI_10565 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 4.8e-31 139.0 132 52.3
AUR62004580 Chenopodium quinoa HOM05D006270 ORTHO05D007755 2.4e-30 136.7 107 61.7
CDE04G3476 Ceratophyllum demersum HOM05D006270 ORTHO05D007755 5.9e-29 132.1 188 39.4
SEGI_32338 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.9e-27 127.1 118 53.4
MELO3C024085.2 Cucumis melo HOM05D006270 ORTHO05D007755 5.5e-27 125.6 149 47.7
AagrBONN_evm.TU.Sc2ySwM_228.4762 Anthoceros agrestis HOM05D006270 ORTHO05D007755 8.8e-25 118.2 137 44.5
Ah.05g178770 Amaranthus hybridus HOM05D006270 ORTHO05D007755 5.3e-22 109.0 147 42.9
SEGI_00952 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 5.9e-21 105.5 109 48.6
Solyc11g020000.1 Solanum lycopersicum HOM05D006270 ORTHO05D007755 1.0e-20 104.8 186 33.9
Cre06.g269100 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 5.0e-20 102.4 216 34.3
Nitab4.5_0000329g0020 Nicotiana tabacum HOM05D006270 ORTHO05D007755 4.2e-19 99.4 128 46.9
MD01G1220200 Malus domestica HOM05D006270 ORTHO05D007755 2.7e-18 96.7 69 66.7
CBR_g50390 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-17 92.4 109 44.0
GSVIVG01026021001 Vitis vinifera HOM05D000026 ORTHO05D001436 6.8e-17 92.0 65 66.2
SEGI_26224 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.2e-15 87.0 99 45.5
GSVIVG01026018001 Vitis vinifera HOM05D006270 ORTHO05D007755 5.5e-11 72.4 46 67.4
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 2.4e-06 57.0 144 29.9
Cre13.g581150 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D006928 3.1e-06 56.6 91 38.5
MCO16G519 Micromonas commoda HOM05D006270 ORTHO05D007755 3.1e-06 56.6 86 34.9


User provided reference genes

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