Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 6.2e-55 217.2 111 100.0
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 8.9e-54 213.4 111 98.2
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.4e-35 152.9 99 81.8
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 9.3e-35 150.2 101 77.2
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.1e-34 149.1 94 80.9
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.7e-34 148.7 99 74.7
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 2.7e-34 148.7 99 78.8
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 2.7e-34 148.7 113 70.8
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 3.5e-34 148.3 97 80.4
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 3.5e-34 148.3 97 80.4
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 3.5e-34 148.3 97 78.4
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 4.6e-34 147.9 113 70.8
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 7.9e-34 147.1 97 79.4
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-33 146.4 98 77.6
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.3e-33 146.4 98 77.6
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 3.0e-33 145.2 98 74.5
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.1e-32 143.3 99 77.8
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 3.3e-32 141.7 99 71.7
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 9.6e-32 140.2 97 78.4
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 4.8e-31 137.9 101 72.3
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 6.2e-31 137.5 99 74.7
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 8.1e-31 137.1 96 75.0
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 4.0e-30 134.8 102 75.5
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 6.9e-30 134.0 97 76.3
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.6e-29 132.1 94 73.4
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 3.4e-29 131.7 100 76.0
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 3.4e-29 131.7 99 70.7
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 4.5e-29 131.3 97 72.2
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 5.8e-29 131.0 97 74.2
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.2e-28 129.0 93 68.8
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 3.8e-28 128.3 88 71.6
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 6.4e-28 127.5 87 73.6
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 6.4e-28 127.5 88 72.7
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 8.4e-28 127.1 97 72.2
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.1e-27 126.7 96 74.0
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.1e-27 126.7 92 69.6
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.9e-27 125.9 91 74.7
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.9e-27 125.9 91 69.2
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.2e-26 123.2 98 65.3
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.2e-26 123.2 92 67.4
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.6e-26 122.9 79 72.2
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 2.1e-26 122.5 76 73.7
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 2.7e-26 122.1 94 63.8
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 2.7e-26 122.1 88 68.2
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 3.5e-26 121.7 94 63.8
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 3.5e-26 121.7 74 75.7
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 1.0e-25 120.2 90 65.6
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.3e-25 119.8 85 68.2
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.8e-25 119.4 92 64.1
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.8e-25 119.4 92 66.3
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.8e-25 119.4 92 66.3
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.8e-25 119.4 76 72.4
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 2.3e-25 119.0 78 73.1
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.3e-25 119.0 92 66.3
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.3e-25 119.0 92 65.2
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.3e-25 119.0 93 65.6
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.3e-25 119.0 69 76.8
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 3.0e-25 118.6 90 63.3
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 3.9e-25 118.2 92 64.1
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 5.1e-25 117.9 89 68.5
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 5.1e-25 117.9 78 71.8
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 5.1e-25 117.9 93 64.5
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 5.1e-25 117.9 80 68.8
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 8.7e-25 117.1 93 64.5
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.1e-24 116.7 76 69.7
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.1e-24 116.7 93 63.4
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 1.1e-24 116.7 76 71.1
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.5e-24 116.3 80 70.0
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.9e-24 115.9 76 71.1
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 2.5e-24 115.5 73 68.5
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 4.3e-24 114.8 77 71.4
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 4.3e-24 114.8 93 63.4
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 4.3e-24 114.8 91 62.6
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 5.6e-24 114.4 97 58.8
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 9.6e-24 113.6 73 71.2
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 9.6e-24 113.6 91 62.6
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 1.3e-23 113.2 91 63.7
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.6e-23 112.8 73 72.6
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 1.6e-23 112.8 73 71.2
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.1e-23 112.5 74 74.3
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 2.1e-23 112.5 73 71.2
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 2.8e-23 112.1 69 73.9
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 2.8e-23 112.1 88 63.6
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.7e-23 111.7 69 71.0
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.7e-23 111.7 69 71.0
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 3.7e-23 111.7 88 63.6
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 3.7e-23 111.7 62 80.6
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 4.8e-23 111.3 73 71.2
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 4.8e-23 111.3 80 70.0
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 4.8e-23 111.3 66 77.3
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 6.2e-23 110.9 78 66.7
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 6.2e-23 110.9 78 66.7
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.4e-22 109.8 86 64.0
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 1.8e-22 109.4 71 73.2
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.8e-22 109.4 83 68.7
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 2.4e-22 109.0 69 72.5
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 2.4e-22 109.0 80 63.8
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 3.1e-22 108.6 91 65.9
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 3.1e-22 108.6 91 65.9
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 3.1e-22 108.6 80 66.2
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 4.0e-22 108.2 84 61.9
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 5.3e-22 107.8 74 62.2
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 5.3e-22 107.8 97 56.7
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 5.3e-22 107.8 81 65.4
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 9.0e-22 107.1 68 75.0
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 9.0e-22 107.1 78 70.5
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.2e-21 106.7 64 71.9
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.5e-21 106.3 61 78.7
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 2.0e-21 105.9 76 65.8
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 3.4e-21 105.1 73 63.0
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 5.8e-21 104.4 74 67.6
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 1.3e-20 103.2 67 71.6
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 1.7e-20 102.8 86 57.0
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 2.2e-20 102.4 92 59.8
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 2.2e-20 102.4 74 60.8
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 4.9e-20 101.3 69 66.7
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.9e-20 101.3 67 70.1
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 6.5e-20 100.9 101 51.5
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 8.4e-20 100.5 74 66.2
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.4e-19 99.8 73 65.8
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.4e-19 99.8 67 68.7
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.9e-19 99.4 81 59.3
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.9e-19 99.4 81 59.3
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.9e-19 99.4 66 72.7
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 4.2e-19 98.2 63 73.0
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 4.2e-19 98.2 69 62.3
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 5.5e-19 97.8 95 53.7
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 5.5e-19 97.8 95 53.7
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 7.1e-19 97.4 82 61.0
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 7.1e-19 97.4 90 57.8
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 3.5e-18 95.1 90 56.7
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 3.5e-18 95.1 90 56.7
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 3.0e-17 92.0 122 47.5
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.0e-17 92.0 76 57.9
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 6.7e-17 90.9 85 50.6
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.1e-16 90.1 91 51.6
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 7.4e-16 87.4 69 63.8
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.3e-15 86.7 81 53.1
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.6e-15 86.3 65 64.6
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 2.2e-15 85.9 100 49.0
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.2e-15 85.9 63 66.7
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 6.3e-15 84.3 65 61.5
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.3e-15 84.3 65 63.1
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 8.2e-15 84.0 56 67.9
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.1e-14 83.6 61 63.9
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.1e-14 83.6 96 47.9
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.4e-14 83.2 66 62.1
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.4e-14 83.2 74 54.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.4e-14 82.4 68 57.4
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.8e-12 75.1 50 68.0
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 8.5e-12 73.9 61 59.0
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 8.5e-12 73.9 63 52.4
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.3e-09 65.9 44 70.5
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 5.1e-09 64.7 69 47.8
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 3.3e-08 62.0 48 68.8
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.4e-06 56.6 46 60.9


User provided reference genes

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