Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p34900 Brassica napus HOM05D002677 ORTHO05D002906 2.2e-97 359.0 185 100.0
C06p34940 Brassica napus HOM05D002677 ORTHO05D002906 8.6e-94 347.1 184 95.7
BcaC08g45704 Brassica carinata HOM05D002677 ORTHO05D002906 2.8e-92 342.0 184 94.0
BolC6t38592H Brassica oleracea HOM05D002677 ORTHO05D002906 2.8e-92 342.0 184 94.0
A07p30200 Brassica napus HOM05D002677 ORTHO05D002906 1.1e-83 313.5 187 86.6
BraA07t30657Z Brassica rapa HOM05D002677 ORTHO05D002906 1.1e-83 313.5 187 86.6
BcaB03g15671 Brassica carinata HOM05D002677 ORTHO05D002906 4.3e-77 291.6 187 81.8
BcaC08g46700 Brassica carinata HOM05D002677 ORTHO05D002906 8.1e-76 287.3 188 81.4
C06p46840 Brassica napus HOM05D002677 ORTHO05D002906 8.1e-76 287.3 188 81.4
BolC6t39725H Brassica oleracea HOM05D002677 ORTHO05D002906 8.1e-76 287.3 188 81.4
Thhalv10019851m.g Eutrema salsugineum HOM05D002677 ORTHO05D002906 6.9e-75 284.3 186 80.1
A07p38650 Brassica napus HOM05D002677 ORTHO05D002906 4.5e-74 281.6 188 79.3
Sp5g27570 Schrenkiella parvula HOM05D002677 ORTHO05D002906 2.4e-72 275.8 188 77.1
BcaB05g24758 Brassica carinata HOM05D002677 ORTHO05D002906 4.6e-71 271.6 182 80.2
BcaB03g15000 Brassica carinata HOM05D002677 ORTHO05D002906 3.0e-70 268.9 187 78.1
A02p18030 Brassica napus HOM05D002677 ORTHO05D002906 1.4e-67 260.0 183 72.7
Carub.0002s1934 Capsella rubella HOM05D002677 ORTHO05D002906 1.2e-66 256.9 189 74.6
BraA02t06851Z Brassica rapa HOM05D002677 ORTHO05D002906 3.4e-66 255.4 183 72.1
C02p30000 Brassica napus HOM05D002677 ORTHO05D002906 6.4e-65 251.1 181 71.3
BolC2t09051H Brassica oleracea HOM05D002677 ORTHO05D002906 6.4e-65 251.1 181 73.5
AL2G32180 Arabidopsis lyrata HOM05D002677 ORTHO05D002906 9.3e-64 247.3 187 74.9
AT1G72490 Arabidopsis thaliana HOM05D002677 ORTHO05D002906 6.0e-63 244.6 189 72.0
CARHR065430 Cardamine hirsuta HOM05D002677 ORTHO05D002906 1.8e-62 243.0 187 74.3
BcaC03g15392 Brassica carinata HOM05D002677 ORTHO05D002906 6.5e-57 224.6 158 73.4
Aa31LG4G2820 Aethionema arabicum HOM05D002677 ORTHO05D002906 5.0e-49 198.4 180 66.7
THA.LOC104814044 Tarenaya hassleriana HOM05D002677 ORTHO05D002906 2.7e-47 192.6 191 63.4
THA.LOC104812257 Tarenaya hassleriana HOM05D002677 ORTHO05D002906 4.3e-45 185.3 189 63.5
Sp1g15540 Schrenkiella parvula HOM05D002677 ORTHO05D002906 7.4e-45 184.5 189 59.8
SpUn0033_0010 Schrenkiella parvula HOM05D002677 ORTHO05D002906 7.4e-45 184.5 189 59.8
Thhalv10009299m.g Eutrema salsugineum HOM05D002677 ORTHO05D002906 9.7e-45 184.1 187 59.9
AT1G17400 Arabidopsis thaliana HOM05D002677 ORTHO05D002906 1.6e-44 183.3 187 59.4
A06p13360 Brassica napus HOM05D002677 ORTHO05D002906 1.6e-44 183.3 185 60.5
BraA06t24488Z Brassica rapa HOM05D002677 ORTHO05D002906 1.6e-44 183.3 185 60.5
C05p15820 Brassica napus HOM05D002677 ORTHO05D002906 2.8e-44 182.6 185 61.1
BolC5t30287H Brassica oleracea HOM05D002677 ORTHO05D002906 2.8e-44 182.6 185 61.1
AL1G29660 Arabidopsis lyrata HOM05D002677 ORTHO05D002906 4.8e-44 181.8 187 59.4
Aa31LG7G2290 Aethionema arabicum HOM05D002677 ORTHO05D002906 2.4e-43 179.5 182 57.7
BcaC07g38854 Brassica carinata HOM05D002677 ORTHO05D002906 9.1e-43 177.6 186 58.1
BolC8t49422H Brassica oleracea HOM05D002677 ORTHO05D002906 9.1e-43 177.6 186 58.1
Thecc.06G123400 Theobroma cacao HOM05D002677 ORTHO05D002906 7.7e-42 174.5 179 58.7
Duzib235G0718 Durio zibethinus HOM05D002677 ORTHO05D002906 2.9e-41 172.6 180 58.3
Potri.003G068300 Populus trichocarpa HOM05D002677 ORTHO05D002906 2.9e-41 172.6 182 56.6
COL.COLO4_30726 Corchorus olitorius HOM05D002677 ORTHO05D002906 3.8e-41 172.2 182 58.2
CARHR017990 Cardamine hirsuta HOM05D002677 ORTHO05D002906 5.0e-41 171.8 188 54.8
Potri.001G166700 Populus trichocarpa HOM05D002677 ORTHO05D002906 5.0e-41 171.8 182 56.0
Sabra01G0126600 Salix brachista HOM05D002677 ORTHO05D002906 5.0e-41 171.8 182 57.1
BcaB03g13001 Brassica carinata HOM05D002677 ORTHO05D002906 8.5e-41 171.0 183 56.8
THA.LOC104808059 Tarenaya hassleriana HOM05D002677 ORTHO05D002906 2.1e-39 166.4 175 61.1
Duzib192G0993 Durio zibethinus HOM05D002677 ORTHO05D002906 3.6e-39 165.6 182 55.5
Gohir.D05G141700 Gossypium hirsutum HOM05D002677 ORTHO05D002906 7.9e-39 164.5 179 54.7
Gorai.009G145800 Gossypium raimondii HOM05D002677 ORTHO05D002906 7.9e-39 164.5 179 54.7
C08p17920 Brassica napus HOM05D002677 ORTHO05D002906 1.0e-38 164.1 166 57.8
Gohir.A05G139500 Gossypium hirsutum HOM05D002677 ORTHO05D002906 1.4e-38 163.7 179 54.7
MD09G1179400 Malus domestica HOM05D002677 ORTHO05D002906 1.4e-38 163.7 181 54.1
FvH4_6g35070 Fragaria vesca HOM05D002677 ORTHO05D002906 1.8e-38 163.3 181 55.2
Manes.11G017200 Manihot esculenta HOM05D002677 ORTHO05D002906 2.3e-38 162.9 183 55.7
Sabra03G0040000 Salix brachista HOM05D002677 ORTHO05D002906 5.1e-38 161.8 200 50.5
Carub.0001s1716 Capsella rubella HOM05D002677 ORTHO05D002906 6.7e-38 161.4 189 56.1
Cpa.g.sc25.141 Carica papaya HOM05D002677 ORTHO05D002906 6.7e-38 161.4 179 56.4
FAN14G5432 Fragaria x ananassa HOM05D002677 ORTHO05D002906 6.7e-38 161.4 182 56.0
Gohir.A10G055600 Gossypium hirsutum HOM05D002677 ORTHO05D002906 6.7e-38 161.4 180 53.9
TWI14G0551 Tripterygium wilfordii HOM05D002677 ORTHO05D002906 6.7e-38 161.4 179 54.2
FAN02G0141 Fragaria x ananassa HOM05D002677 ORTHO05D002906 1.1e-37 160.6 181 54.7
FAN09G4841 Fragaria x ananassa HOM05D002677 ORTHO05D002906 1.1e-37 160.6 181 54.7
MD17G1165000 Malus domestica HOM05D002677 ORTHO05D002906 1.5e-37 160.2 180 53.3
Manes.04G147300 Manihot esculenta HOM05D002677 ORTHO05D002906 2.0e-37 159.8 183 56.3
RcHm_v2.0_Chr2g0146241 Rosa chinensis HOM05D002677 ORTHO05D002906 2.0e-37 159.8 180 52.8
Lj3g0022268 Lotus japonicus HOM05D002677 ORTHO05D002906 4.4e-37 158.7 180 51.1
Prupe.3G038300 Prunus persica HOM05D002677 ORTHO05D002906 4.4e-37 158.7 185 51.9
Gorai.011G061600 Gossypium raimondii HOM05D002677 ORTHO05D002906 7.4e-37 157.9 179 53.6
CiPaw.01G216700 Carya illinoinensis HOM05D002677 ORTHO05D002906 9.7e-37 157.5 178 51.7
CiPaw.02G134300 Carya illinoinensis HOM05D002677 ORTHO05D002906 9.7e-37 157.5 179 54.2
FAN05G3688 Fragaria x ananassa HOM05D002677 ORTHO05D002906 9.7e-37 157.5 178 53.9
QL05p003883 Quercus lobata HOM05D002677 ORTHO05D002906 1.3e-36 157.1 180 53.3
PGR102G1333 Punica granatum HOM05D002677 ORTHO05D002906 2.8e-36 156.0 181 52.5
Psat4g167720 Pisum sativum HOM05D002677 ORTHO05D002906 3.7e-36 155.6 179 52.5
Haze_16056 Corylus avellana HOM05D002677 ORTHO05D002906 4.8e-36 155.2 212 47.6
Phvul.010G128000 Phaseolus vulgaris HOM05D002677 ORTHO05D002906 8.2e-36 154.5 179 51.4
TPR.G16733 Trifolium pratense HOM05D002677 ORTHO05D002906 1.8e-35 153.3 181 51.4
Atru.chr1.4046 Acer truncatum HOM05D002677 ORTHO05D002906 5.3e-35 151.8 193 49.7
CsaV3_7G034300 Cucumis sativus L. HOM05D002677 ORTHO05D002906 6.9e-35 151.4 178 51.7
Medtr8g021237 Medicago truncatula HOM05D002677 ORTHO05D002906 9.1e-35 151.0 180 50.6
VMungo0331G1783 Vigna mungo HOM05D002677 ORTHO05D002906 1.5e-34 150.2 179 50.3
A08p30910 Brassica napus HOM05D002677 ORTHO05D002906 2.0e-34 149.8 164 54.3
BraA08t35023Z Brassica rapa HOM05D002677 ORTHO05D002906 2.0e-34 149.8 164 54.3
CANSAT56G2660 Cannabis sativa HOM05D002677 ORTHO05D002906 2.0e-34 149.8 185 48.6
Glyma.07G040800 Glycine max HOM05D002677 ORTHO05D002906 2.0e-34 149.8 181 49.7
MELO3C024339.2 Cucumis melo HOM05D002677 ORTHO05D002906 4.5e-34 148.7 178 50.6
Sed0025151 Sechium edule HOM05D002677 ORTHO05D002906 7.7e-34 147.9 178 50.6
arahy.Tifrunner.gnm1.ann1.Z8YREE Arachis hypogaea HOM05D002677 ORTHO05D002906 1.0e-33 147.5 156 53.2
Ca_23401_v3 Cicer arietinum L. HOM05D002677 ORTHO05D002906 1.0e-33 147.5 179 49.2
Oeu057901.1 Olea europaea HOM05D002677 ORTHO05D002906 1.3e-33 147.1 175 55.4
ClCG09G001110 Citrullus lanatus HOM05D001225 ORTHO05D001252 2.2e-33 146.4 179 50.8
Eucgr.J02802 Eucalyptus grandis HOM05D002677 ORTHO05D002906 2.9e-33 146.0 180 49.4
Actinidia32198 Actinidia chinensis HOM05D002677 ORTHO05D002906 3.8e-33 145.6 179 49.2
arahy.Tifrunner.gnm1.ann1.0DE01N Arachis hypogaea HOM05D002677 ORTHO05D002906 5.0e-33 145.2 156 52.6
Dinv37852 Davidia involucrata HOM05D002677 ORTHO05D002906 5.0e-33 145.2 178 51.1
Migut.I01096 Erythranthe guttata HOM05D002677 ORTHO05D002906 5.0e-33 145.2 179 50.3
Glyma.16G009400 Glycine max HOM05D002677 ORTHO05D002906 6.5e-33 144.8 185 49.2
Lalb_Chr10g0101391 Lupinus albus HOM05D002677 ORTHO05D002906 1.1e-32 144.1 180 48.9
Hund05722 Selenicereus undatus HOM05D002677 ORTHO05D002906 1.4e-32 143.7 179 49.2
Lj5C33T9 Lonicera japonica HOM05D002677 ORTHO05D002906 3.2e-32 142.5 182 50.5
CSS0009017 Camellia sinensis var. sinensis HOM05D002677 ORTHO05D002906 4.2e-32 142.1 187 47.1
SalBow6G4216 Salvia bowleyana HOM05D002677 ORTHO05D002906 5.5e-32 141.7 169 49.7
SalBow6G6250 Salvia bowleyana HOM05D002677 ORTHO05D002906 5.5e-32 141.7 169 49.7
Glyma.19G263200 Glycine max HOM05D002677 ORTHO05D002906 7.2e-32 141.4 189 46.6
Ciclev10027453m.g Citrus clementina HOM05D002677 ORTHO05D002906 1.2e-31 140.6 163 50.3
Oeu043637.1 Olea europaea HOM05D002677 ORTHO05D002906 1.2e-31 140.6 174 52.9
Nitab4.5_0000189g0120 Nicotiana tabacum HOM05D002677 ORTHO05D002906 2.7e-31 139.4 180 49.4
AUR62001451 Chenopodium quinoa HOM05D002677 ORTHO05D002906 6.1e-31 138.3 183 47.0
Lsat_1_v5_gn_4_92641 Lactuca sativa HOM05D002677 ORTHO05D002906 7.9e-31 137.9 182 47.3
ECA247G1792 Erigeron canadensis HOM05D002677 ORTHO05D002906 1.8e-30 136.7 184 49.5
Lsat_1_v5_gn_1_37921 Lactuca sativa HOM05D002677 ORTHO05D002906 2.3e-30 136.3 182 48.9
Rhsim08G0240600 Rhododendron simsii HOM05D002677 ORTHO05D002906 3.9e-30 135.6 188 46.8
Ah.08g217040 Amaranthus hybridus HOM05D002677 ORTHO05D002906 5.2e-30 135.2 184 48.4
Phvul.009G262800 Phaseolus vulgaris HOM05D002677 ORTHO05D002906 6.7e-30 134.8 194 44.8
EL10Ac7g16436 Beta vulgaris HOM05D002677 ORTHO05D002906 1.1e-29 134.0 164 48.8
Nitab4.5_0005192g0020 Nicotiana tabacum HOM05D002677 ORTHO05D002906 1.5e-29 133.7 184 45.7
Sed0006448 Sechium edule HOM05D002677 ORTHO05D002906 3.3e-29 132.5 179 47.5
Peaxi162Scf00207g01427 Petunia axillaris HOM05D002677 ORTHO05D002906 9.7e-29 131.0 166 49.4
Sopen12g023860 Solanum pennellii HOM05D002677 ORTHO05D002906 1.3e-28 130.6 199 43.7
Solyc12g049380.3 Solanum lycopersicum HOM05D002677 ORTHO05D002906 1.7e-28 130.2 201 43.8
PGR119G0443 Punica granatum HOM05D002677 ORTHO05D002906 2.8e-28 129.4 181 45.9
Sopen06g022420 Solanum pennellii HOM05D002677 ORTHO05D002906 2.8e-28 129.4 185 45.9
Nitab4.5_0000255g0310 Nicotiana tabacum HOM05D002677 ORTHO05D002906 3.7e-28 129.0 174 42.5
Cc04_g01130 Coffea canephora HOM05D002677 ORTHO05D002906 4.8e-28 128.6 188 45.7
Glyma.03G264200 Glycine max HOM05D002677 ORTHO05D002906 4.8e-28 128.6 194 43.8
Nitab4.5_0002716g0010 Nicotiana tabacum HOM05D002677 ORTHO05D002906 1.1e-27 127.5 171 47.4
Sc12g0010730 Simmondsia chinensis HOM05D002677 ORTHO05D002906 1.1e-27 127.5 180 45.6
Hund18679 Selenicereus undatus HOM05D002677 ORTHO05D002906 1.4e-27 127.1 182 47.3
HanXRQChr09g0277051 Helianthus annuus HOM05D002677 ORTHO05D002906 1.8e-27 126.7 172 47.7
Gohir.D10G057500 Gossypium hirsutum HOM05D002677 ORTHO05D002906 2.4e-27 126.3 178 47.8
AUR62009914 Chenopodium quinoa HOM05D002677 ORTHO05D002906 3.1e-27 125.9 155 49.0
DCAR_016108 Daucus carota HOM05D002677 ORTHO05D002906 7.0e-27 124.8 182 44.0
vmacro15046 Vaccinium macrocarpon HOM05D002677 ORTHO05D002906 1.2e-26 124.0 178 48.3
HanXRQChr04g0094501 Helianthus annuus HOM05D002677 ORTHO05D002906 4.5e-26 122.1 151 47.7
Peaxi162Scf00038g02027 Petunia axillaris HOM05D002677 ORTHO05D002906 1.0e-25 120.9 153 46.4
SGA_v2.0_scaffold71G23889 Striga asiatica HOM05D002029 ORTHO05D002158 2.2e-25 119.8 152 48.0
PSO724G1034 Papaver somniferum HOM05D002677 ORTHO05D002906 2.9e-25 119.4 170 46.5
PSO386G0050 Papaver somniferum HOM05D002677 ORTHO05D002906 3.8e-25 119.0 182 44.5
Lalb_Chr15g0076781 Lupinus albus HOM05D002677 ORTHO05D002906 8.5e-25 117.9 160 47.5
GSVIVG01016727001 Vitis vinifera HOM05D002677 ORTHO05D002906 2.7e-23 112.8 179 44.7
MBI13_g00700_MAGBIO Magnolia biondii HOM05D002677 ORTHO05D002906 4.7e-23 112.1 185 41.6
TAR636G2539 Trochodendron aralioides HOM05D002677 ORTHO05D002906 1.8e-22 110.2 191 41.9
Nn6g35685 Nelumbo nucifera HOM05D002677 ORTHO05D002906 5.2e-22 108.6 187 40.6
TAR624G0298 Trochodendron aralioides HOM05D002677 ORTHO05D002906 1.2e-21 107.5 162 42.6
Aqoxy7G04093 Aquilegia oxysepala HOM05D002677 ORTHO05D002906 2.0e-21 106.7 187 43.9
PSO421G0285 Papaver somniferum HOM05D002677 ORTHO05D002906 3.7e-20 102.4 208 38.9
PSO104G0026 Papaver somniferum HOM05D002677 ORTHO05D002906 6.3e-20 101.7 209 37.8
MBI19_g05294_MAGBIO Magnolia biondii HOM05D002677 ORTHO05D002906 1.1e-19 100.9 155 41.3
Nn8g38592 Nelumbo nucifera HOM05D002677 ORTHO05D002906 1.1e-19 100.9 188 37.8
VMungo1309G2995 Vigna mungo HOM05D002677 ORTHO05D002906 1.1e-19 100.9 110 52.7
Oeu015495.1 Olea europaea HOM05D002677 ORTHO05D002906 1.4e-19 100.5 177 41.8
Hma1.2p1_0229F.1_g096703 Hydrangea macrophylla HOM05D002677 ORTHO05D002906 1.6e-18 97.1 88 60.2
VMungo1309G1789 Vigna mungo HOM05D002677 ORTHO05D002906 3.5e-18 95.9 116 48.3
CDE05G0419 Ceratophyllum demersum HOM05D002677 ORTHO05D002906 1.0e-17 94.4 178 37.1
BcaC07g41420 Brassica carinata HOM05D002677 ORTHO05D002906 2.2e-17 93.2 187 39.0
HPP92_009224 Vanilla planifolia HOM05D002677 ORTHO05D002906 2.9e-17 92.8 188 37.2
Dinv42411 Davidia involucrata HOM05D002677 ORTHO05D002906 3.8e-17 92.4 177 41.8
PSO135G0712 Papaver somniferum HOM05D002677 ORTHO05D002906 6.5e-17 91.7 208 33.2
ECA232G4528 Erigeron canadensis HOM05D002029 ORTHO05D002158 4.0e-14 82.4 201 36.8
CDE11G0586 Ceratophyllum demersum HOM05D002677 ORTHO05D002906 9.8e-13 77.8 144 38.2
Thecc.09G074400 Theobroma cacao HOM05D002677 ORTHO05D002906 4.8e-12 75.5 178 35.4
Actinidia30235 Actinidia chinensis HOM05D002677 ORTHO05D002906 2.7e-10 69.7 173 35.8
Actinidia39643 Actinidia chinensis HOM05D002677 ORTHO05D002906 2.9e-09 66.2 156 39.7
Peaxi162Scf00880g00320 Petunia axillaris HOM05D002677 ORTHO05D002906 3.8e-09 65.9 170 33.5
Peaxi162Scf00418g00311 Petunia axillaris HOM05D002677 ORTHO05D002906 8.6e-09 64.7 177 28.8
VMungo0540G1353 Vigna mungo HOM05D002677 ORTHO05D002906 1.5e-08 63.9 84 45.2
Gorai.010G090000 Gossypium raimondii HOM05D002677 ORTHO05D002906 1.9e-08 63.5 158 32.9
Nitab4.5_0000024g0290 Nicotiana tabacum HOM05D002677 ORTHO05D002906 1.9e-08 63.5 177 30.5
Prupe.7G195900 Prunus persica HOM05D002677 ORTHO05D002906 1.9e-08 63.5 183 31.7
Gohir.D06G076900 Gossypium hirsutum HOM05D002677 ORTHO05D002906 3.2e-08 62.8 158 32.9
Migut.D00931 Erythranthe guttata HOM05D002677 ORTHO05D002906 4.2e-08 62.4 182 33.5
Gohir.A06G077900 Gossypium hirsutum HOM05D002677 ORTHO05D002906 4.2e-08 62.4 181 32.6
Manes.16G093700 Manihot esculenta HOM05D002677 ORTHO05D002906 9.5e-08 61.2 174 33.3
ATR0006G050 Amborella trichopoda HOM05D002677 ORTHO05D002906 1.2e-07 60.8 146 31.5
DCAR_011937 Daucus carota HOM05D002677 ORTHO05D002906 1.2e-07 60.8 179 33.0
Rhsim05G0005200 Rhododendron simsii HOM05D002677 ORTHO05D002906 2.8e-07 59.7 148 35.8
COL.COLO4_18074 Corchorus olitorius HOM05D002677 ORTHO05D002906 4.7e-07 58.9 177 29.4
QL11p001162 Quercus lobata HOM05D002677 ORTHO05D002906 8.0e-07 58.2 176 31.8
Nitab4.5_0006232g0050 Nicotiana tabacum HOM05D002677 ORTHO05D002906 1.0e-06 57.8 79 44.3
Cc06_g12430 Coffea canephora HOM05D002677 ORTHO05D002906 1.4e-06 57.4 149 32.9
TWI34G1009 Tripterygium wilfordii HOM05D002677 ORTHO05D002906 3.0e-06 56.2 152 31.6
Os09g0439800 Oryza sativa ssp. japonica HOM05D002677 ORTHO05D002906 4.0e-06 55.8 110 40.0
Phvul.009G225800 Phaseolus vulgaris HOM05D002677 ORTHO05D002906 6.8e-06 55.1 182 29.1


User provided reference genes

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