Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p34850 Brassica napus HOM05D009099 ORTHO05D014276 8.7e-81 303.5 147 100.0
C03p49580 Brassica napus HOM05D009099 ORTHO05D014276 1.3e-71 273.1 147 91.2
C04p64520 Brassica napus HOM05D009099 ORTHO05D014276 9.3e-67 256.9 134 94.0
BolC4t27933H Brassica oleracea HOM05D009099 ORTHO05D014276 5.9e-61 237.7 125 92.8
C09p05310 Brassica napus HOM05D009099 ORTHO05D014276 1.3e-60 236.5 126 91.3
BolC3t17256H Brassica oleracea HOM05D009099 ORTHO05D014276 8.5e-60 233.8 125 90.4
C07p60370 Brassica napus HOM05D000451 ORTHO05D014276 1.4e-43 179.9 95 90.5
BcaC04g23728 Brassica carinata HOM05D009099 ORTHO05D014276 3.9e-41 171.8 126 71.4
A03p52750 Brassica napus HOM05D000451 ORTHO05D000351 8.5e-36 154.1 77 89.6
BraA03t14349Z Brassica rapa HOM05D000451 ORTHO05D000351 1.1e-35 153.7 77 88.3
BcaC02g07692 Brassica carinata HOM05D009099 ORTHO05D014276 2.1e-34 149.4 80 90.0
BcaC06g30662 Brassica carinata HOM05D000451 ORTHO05D000351 2.3e-33 146.0 95 70.5
C07p51180 Brassica napus HOM05D000451 ORTHO05D000351 3.0e-33 145.6 77 84.4
BolC7t45620H Brassica oleracea HOM05D000451 ORTHO05D000351 3.0e-33 145.6 77 84.4
BcaC09g51224 Brassica carinata HOM05D000451 ORTHO05D000351 1.4e-30 136.7 96 63.5
Sp7g19550 Schrenkiella parvula HOM05D000451 ORTHO05D000351 1.4e-30 136.7 92 65.2
C01p15330 Brassica napus HOM05D000451 ORTHO05D000351 4.1e-30 135.2 96 62.5
BolC1t01487H Brassica oleracea HOM05D000451 ORTHO05D000351 4.1e-30 135.2 96 62.5
BcaNung02800 Brassica carinata HOM05D000451 ORTHO05D000351 9.1e-30 134.0 96 63.5
A01p12740 Brassica napus HOM05D000451 ORTHO05D000351 1.2e-29 133.7 97 61.9
BraA01t01217Z Brassica rapa HOM05D000451 ORTHO05D000351 1.2e-29 133.7 97 61.9
AL7G32650 Arabidopsis lyrata HOM05D000451 ORTHO05D000351 2.7e-29 132.5 100 62.0
AT4G21430 Arabidopsis thaliana HOM05D000451 ORTHO05D000351 1.3e-28 130.2 100 61.0
Thhalv10024332m.g Eutrema salsugineum HOM05D000451 ORTHO05D000351 2.2e-28 129.4 81 71.6
Carub.0007s2000 Capsella rubella HOM05D000451 ORTHO05D000351 1.1e-27 127.1 96 60.4
Aa31LG6G3440 Aethionema arabicum HOM05D000451 ORTHO05D000351 7.5e-24 114.4 81 64.2
THA.LOC104806269 Tarenaya hassleriana HOM05D000451 ORTHO05D000351 3.7e-23 112.1 78 64.1
Cpa.g.sc27.138 Carica papaya HOM05D000451 ORTHO05D014276 9.5e-19 97.4 73 54.8
Ciclev10018309m.g Citrus clementina HOM05D000451 ORTHO05D000351 8.9e-17 90.9 87 46.0
TWI63G1167 Tripterygium wilfordii HOM05D000451 ORTHO05D000351 1.2e-16 90.5 106 40.6
Oeu050817.1 Olea europaea HOM05D000451 ORTHO05D000351 1.5e-16 90.1 92 45.7
Phvul.002G220900 Phaseolus vulgaris HOM05D000451 ORTHO05D000351 2.0e-16 89.7 81 48.1
Thecc.06G201800 Theobroma cacao HOM05D000451 ORTHO05D000351 3.4e-16 89.0 82 47.6
Haze_06592 Corylus avellana HOM05D000451 ORTHO05D000351 5.7e-16 88.2 81 48.1
Glyma.08G060200 Glycine max HOM05D000451 ORTHO05D000351 5.7e-16 88.2 78 47.4
Oeu016132.1 Olea europaea HOM05D000451 ORTHO05D000351 5.7e-16 88.2 68 54.4
Duzib235G0293 Durio zibethinus HOM05D000451 ORTHO05D000351 7.5e-16 87.8 82 46.3
CANSAT56G1620 Cannabis sativa HOM05D000451 ORTHO05D000351 1.3e-15 87.0 99 41.4
Peaxi162Scf01391g00216 Petunia axillaris HOM05D000451 ORTHO05D000351 1.3e-15 87.0 69 59.4
Rhsim13G0169100 Rhododendron simsii HOM05D000451 ORTHO05D000351 1.3e-15 87.0 100 46.0
Duzib160G0721 Durio zibethinus HOM05D000451 ORTHO05D000351 1.7e-15 86.7 82 46.3
BcaNung02799 Brassica carinata HOM05D000451 ORTHO05D000351 2.8e-15 85.9 44 79.5
Migut.H01525 Erythranthe guttata HOM05D000451 ORTHO05D000351 2.8e-15 85.9 86 46.5
vmacro03801 Vaccinium macrocarpon HOM05D000451 ORTHO05D000351 2.8e-15 85.9 100 46.0
Glyma.07G189100 Glycine max HOM05D000451 ORTHO05D000351 4.9e-15 85.1 77 45.5
PGR004G0305 Punica granatum HOM05D000451 ORTHO05D000351 6.3e-15 84.7 82 43.9
PGR038G0004 Punica granatum HOM05D000451 ORTHO05D000351 6.3e-15 84.7 82 43.9
Dinv40468 Davidia involucrata HOM05D000451 ORTHO05D000351 8.3e-15 84.3 100 40.0
Gohir.A10G022100 Gossypium hirsutum HOM05D000451 ORTHO05D000351 8.3e-15 84.3 82 47.6
Gorai.011G024000 Gossypium raimondii HOM05D000451 ORTHO05D000351 8.3e-15 84.3 82 47.6
Cfa000339 Carpinus fangiana HOM05D000451 ORTHO05D000351 1.1e-14 84.0 81 45.7
CAN.G424.31 Capsicum annuum HOM05D000451 ORTHO05D000351 1.8e-14 83.2 69 56.5
Hma1.2p1_1515F.1_g288170 Hydrangea macrophylla HOM05D000451 ORTHO05D000351 2.4e-14 82.8 95 43.2
Eucgr.D00753 Eucalyptus grandis HOM05D000451 ORTHO05D000351 3.1e-14 82.4 78 42.3
Manes.16G019400 Manihot esculenta HOM05D000451 ORTHO05D000351 4.1e-14 82.0 86 43.0
Actinidia26986 Actinidia chinensis HOM05D000774 ORTHO05D000602 7.0e-14 81.3 78 48.7
Sed0011802 Sechium edule HOM05D000451 ORTHO05D000351 7.0e-14 81.3 87 41.4
Solyc02g079300.3 Solanum lycopersicum HOM05D000451 ORTHO05D000351 7.0e-14 81.3 127 35.4
Sopen02g024120 Solanum pennellii HOM05D000451 ORTHO05D000351 7.0e-14 81.3 127 35.4
arahy.Tifrunner.gnm1.ann1.BL8W3W Arachis hypogaea HOM05D000451 ORTHO05D000351 9.2e-14 80.9 81 42.0
MD10G1304800 Malus domestica HOM05D000451 ORTHO05D000351 9.2e-14 80.9 84 48.8
Gohir.D10G022900 Gossypium hirsutum HOM05D000451 ORTHO05D000351 1.2e-13 80.5 80 47.5
MBI18_g26026_MAGBIO Magnolia biondii HOM05D000451 ORTHO05D000351 1.2e-13 80.5 97 43.3
TAR629G3465 Trochodendron aralioides HOM05D000451 ORTHO05D000351 1.2e-13 80.5 127 37.0
QL05p080957 Quercus lobata HOM05D000451 ORTHO05D000351 1.6e-13 80.1 83 48.2
Sabra04G0018800 Salix brachista HOM05D000451 ORTHO05D000351 1.6e-13 80.1 77 46.8
Potri.004G032700 Populus trichocarpa HOM05D000451 ORTHO05D000351 2.0e-13 79.7 77 48.1
arahy.Tifrunner.gnm1.ann1.AKBJ55 Arachis hypogaea HOM05D000451 ORTHO05D000351 2.7e-13 79.3 71 46.5
ClCG01G022420 Citrullus lanatus HOM05D000451 ORTHO05D000351 2.7e-13 79.3 95 40.0
arahy.Tifrunner.gnm1.ann1.HA6SXM Arachis hypogaea HOM05D000451 ORTHO05D000351 5.9e-13 78.2 70 48.6
arahy.Tifrunner.gnm1.ann1.SL1AZZ Arachis hypogaea HOM05D000451 ORTHO05D000351 5.9e-13 78.2 70 48.6
Cc02_g12300 Coffea canephora HOM05D000451 ORTHO05D000351 5.9e-13 78.2 79 48.1
MD05G1326700 Malus domestica HOM05D000451 ORTHO05D000351 5.9e-13 78.2 83 49.4
TPR.G15382 Trifolium pratense HOM05D000451 ORTHO05D014276 5.9e-13 78.2 82 45.1
Manes.17G033900 Manihot esculenta HOM05D000451 ORTHO05D000351 1.0e-12 77.4 83 41.0
DCAR_024927 Daucus carota HOM05D000451 ORTHO05D000351 1.7e-12 76.6 81 44.4
Medtr4g091520 Medicago truncatula HOM05D000451 ORTHO05D000351 1.7e-12 76.6 80 46.2
Sed0002365 Sechium edule HOM05D000451 ORTHO05D000351 1.7e-12 76.6 87 37.9
Ca_18473_v3 Cicer arietinum L. HOM05D000451 ORTHO05D000351 2.9e-12 75.9 85 44.7
RcHm_v2.0_Chr5g0005871 Rosa chinensis HOM05D000451 ORTHO05D000351 2.9e-12 75.9 84 42.9
CsaV3_6G049610 Cucumis sativus L. HOM05D000451 ORTHO05D000351 3.8e-12 75.5 95 38.9
Potri.011G041400 Populus trichocarpa HOM05D000451 ORTHO05D000351 3.8e-12 75.5 73 43.8
Prupe.4G034800 Prunus persica HOM05D000451 ORTHO05D000351 3.8e-12 75.5 83 47.0
Lj4g0018925 Lotus japonicus HOM05D000451 ORTHO05D000351 5.0e-12 75.1 77 46.8
FAN11G3058 Fragaria x ananassa HOM05D000451 ORTHO05D000351 8.6e-12 74.3 75 46.7
AUR62014694 Chenopodium quinoa HOM05D000451 ORTHO05D000351 1.1e-11 73.9 83 44.6
DCAR_028148 Daucus carota HOM05D000451 ORTHO05D000351 1.1e-11 73.9 95 38.9
MELO3C007332.2 Cucumis melo HOM05D000451 ORTHO05D000351 1.5e-11 73.6 95 37.9
Hund21288 Selenicereus undatus HOM05D000451 ORTHO05D000351 1.5e-11 73.6 81 44.4
C07p60430 Brassica napus HOM05D000032 ORTHO05D014276 1.9e-11 73.2 50 74.0
Psat7g107840 Pisum sativum HOM05D000451 ORTHO05D000351 1.9e-11 73.2 83 45.8
FvH4_3g03760 Fragaria vesca HOM05D000451 ORTHO05D000351 7.3e-11 71.2 75 45.3
FAN16G2895 Fragaria x ananassa HOM05D000451 ORTHO05D000351 7.3e-11 71.2 75 45.3
FAN21G1007 Fragaria x ananassa HOM05D000451 ORTHO05D000351 7.3e-11 71.2 75 45.3
Sc17g0006740 Simmondsia chinensis HOM05D000451 ORTHO05D000351 7.3e-11 71.2 70 47.1
Lsat_1_v5_gn_7_20480 Lactuca sativa HOM05D000451 ORTHO05D000351 9.5e-11 70.9 70 44.3
Nn1g03849 Nelumbo nucifera HOM05D000451 ORTHO05D000351 9.5e-11 70.9 80 41.2
ECA236G3876 Erigeron canadensis HOM05D000451 ORTHO05D000351 1.6e-10 70.1 77 48.1
HanXRQChr05g0131101 Helianthus annuus HOM05D000451 ORTHO05D000351 1.6e-10 70.1 94 39.4
unitig_0.g939 Utricularia gibba HOM05D000451 ORTHO05D000351 2.1e-10 69.7 66 48.5
Ah.14g088800 Amaranthus hybridus HOM05D000451 ORTHO05D000351 2.8e-10 69.3 85 41.2
Lj6g0021099 Lotus japonicus HOM05D000451 ORTHO05D000351 2.8e-10 69.3 69 47.8
EL10Ac8g20551 Beta vulgaris HOM05D000451 ORTHO05D000351 3.6e-10 68.9 83 39.8
VMungo0540G0946 Vigna mungo HOM05D000451 ORTHO05D000351 3.6e-10 68.9 71 45.1
Lalb_Chr05g0218121 Lupinus albus HOM05D000451 ORTHO05D000351 6.1e-10 68.2 73 43.8
Lalb_Chr20g0122371 Lupinus albus HOM05D000451 ORTHO05D000351 6.1e-10 68.2 71 45.1
Ah.09g236400 Amaranthus hybridus HOM05D000451 ORTHO05D000351 1.8e-09 66.6 102 39.2
Os07g0557500 Oryza sativa ssp. japonica HOM05D000451 ORTHO05D000351 1.8e-09 66.6 103 33.0
GSVIVG01003670001 Vitis vinifera HOM05D000451 ORTHO05D014276 1.8e-09 66.6 76 44.7
HanXRQChr15g0482571 Helianthus annuus HOM05D000451 ORTHO05D000351 2.3e-09 66.2 75 45.3
FAN25G3187 Fragaria x ananassa HOM05D000451 ORTHO05D000351 5.2e-09 65.1 75 44.0
HanXRQChr16g0517201 Helianthus annuus HOM05D000451 ORTHO05D000351 5.2e-09 65.1 98 37.8
PSO675G6504 Papaver somniferum HOM05D000451 ORTHO05D000351 6.8e-09 64.7 78 37.2
SHI02150 Sapria himalayana HOM05D000451 ORTHO05D000351 8.9e-09 64.3 101 32.7
Lsat_1_v5_gn_4_58620 Lactuca sativa HOM05D000451 ORTHO05D000351 1.2e-08 63.9 82 37.8
CDE05G0587 Ceratophyllum demersum HOM05D000451 ORTHO05D000602 1.5e-08 63.5 78 41.0
Lalb_Chr18g0059971 Lupinus albus HOM05D000451 ORTHO05D000351 2.0e-08 63.2 73 39.7
Manes.07G075137 Manihot esculenta HOM05D000451 ORTHO05D000351 2.6e-08 62.8 63 39.7
ECA234G2810 Erigeron canadensis HOM05D000451 ORTHO05D000351 5.8e-08 61.6 68 39.7
Nitab4.5_0000649g0130 Nicotiana tabacum HOM05D000451 ORTHO05D000351 7.5e-08 61.2 107 36.4
Zm00001eb323940 Zea mays HOM05D000451 ORTHO05D037863 1.3e-07 60.5 82 39.0
Zm00001eb106740 Zea mays HOM05D000451 ORTHO05D037863 1.7e-07 60.1 78 35.9
Glyma.15G066600 Glycine max HOM05D000451 ORTHO05D000351 2.9e-07 59.3 67 44.8
Psat1g209240 Pisum sativum HOM05D000451 ORTHO05D000351 2.9e-07 59.3 69 39.1
PSO541G3320 Papaver somniferum HOM05D000451 ORTHO05D000351 3.7e-07 58.9 78 35.9
Phvul.006G193200 Phaseolus vulgaris HOM05D000451 ORTHO05D000351 3.7e-07 58.9 70 41.4
TPR.G36777 Trifolium pratense HOM05D000451 ORTHO05D000351 4.9e-07 58.5 69 42.0
Glyma.13G247400 Glycine max HOM05D000451 ORTHO05D000351 8.3e-07 57.8 67 41.8
BcaB04g19938 Brassica carinata HOM05D000032 ORTHO05D002561 1.1e-06 57.4 31 87.1
BcaC04g23360 Brassica carinata HOM05D000032 ORTHO05D002561 1.1e-06 57.4 31 87.1
A09p08120 Brassica napus HOM05D000032 ORTHO05D002561 1.1e-06 57.4 31 87.1
C09p09180 Brassica napus HOM05D000032 ORTHO05D002561 1.1e-06 57.4 31 87.1
BolC9t53831H Brassica oleracea HOM05D000032 ORTHO05D002561 1.1e-06 57.4 31 87.1
BraA09t36463Z Brassica rapa HOM05D000032 ORTHO05D002561 1.1e-06 57.4 31 87.1
Ca_00230_v3 Cicer arietinum L. HOM05D000451 ORTHO05D000351 1.1e-06 57.4 68 33.8
AL8G40180 Arabidopsis lyrata HOM05D000032 ORTHO05D002561 1.4e-06 57.0 31 87.1
AT5G63120 Arabidopsis thaliana HOM05D000032 ORTHO05D002561 1.4e-06 57.0 31 87.1
Carub.0008s2387 Capsella rubella HOM05D000032 ORTHO05D002561 1.4e-06 57.0 31 87.1
Thhalv10003871m.g Eutrema salsugineum HOM05D000032 ORTHO05D002561 1.4e-06 57.0 31 87.1
Sabra11G0028300 Salix brachista HOM05D000451 ORTHO05D000351 1.4e-06 57.0 65 41.5
CARHR276950 Cardamine hirsuta HOM05D000032 ORTHO05D002561 3.2e-06 55.8 31 83.9
Medtr2g011630 Medicago truncatula HOM05D000451 ORTHO05D000351 3.2e-06 55.8 70 35.7
Aa31LG1G18860 Aethionema arabicum HOM05D000032 ORTHO05D002561 4.1e-06 55.5 31 83.9


User provided reference genes

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