Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1289.2 656 100.0
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 0.0e+00 1261.9 664 97.7
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 0.0e+00 1253.8 664 96.8
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1239.6 658 96.0
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 0.0e+00 1217.6 650 95.8
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 0.0e+00 1135.6 663 86.9
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 0.0e+00 1129.4 663 86.1
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 0.0e+00 1122.1 658 86.3
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1118.2 659 85.6
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 0.0e+00 1118.2 659 85.6
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1116.3 658 85.6
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 0.0e+00 1112.4 670 84.5
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 0.0e+00 1106.3 663 84.5
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 0.0e+00 1104.7 658 85.1
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 0.0e+00 1099.3 661 83.8
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 7.1e-300 1033.5 661 79.4
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 2.1e-291 1005.4 662 77.2
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 1.1e-244 850.1 643 66.9
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 5.2e-242 841.3 662 64.5
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 4.4e-241 838.2 642 65.0
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.1e-239 831.6 642 64.3
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 4.1e-239 831.6 643 65.3
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 7.0e-239 830.9 648 64.8
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.6e-238 829.7 662 62.8
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 2.7e-238 828.9 649 64.3
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 3.5e-238 828.6 651 65.4
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 3.8e-237 825.1 641 64.6
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 1.1e-236 823.5 660 62.9
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 7.2e-236 820.8 656 64.3
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 1.2e-235 820.1 656 64.3
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 1.6e-235 819.7 647 63.8
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 2.7e-235 818.9 648 64.0
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 3.0e-234 815.5 641 64.6
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 8.8e-234 813.9 645 64.7
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.2e-233 813.5 649 63.9
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 4.4e-233 811.6 663 62.7
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 6.3e-232 807.7 641 64.1
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 6.3e-232 807.7 654 63.1
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 5.9e-230 801.2 646 63.5
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 7.7e-230 800.8 660 62.4
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 3.8e-229 798.5 644 62.6
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 1.1e-228 797.0 657 62.3
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 3.3e-228 795.4 654 61.2
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 5.5e-228 794.7 643 63.3
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 1.2e-227 793.5 661 61.3
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 2.1e-227 792.7 648 62.5
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 3.6e-227 792.0 643 62.7
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 3.6e-227 792.0 643 62.4
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.6e-227 792.0 641 64.0
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 4.7e-227 791.6 639 63.2
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 3.0e-226 788.9 642 63.6
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 5.2e-226 788.1 640 62.0
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 1.2e-225 786.9 641 63.7
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 2.6e-225 785.8 640 62.3
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 3.4e-225 785.4 647 61.4
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 5.7e-225 784.6 647 62.4
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 1.3e-224 783.5 658 61.9
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.7e-224 783.1 640 62.0
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 4.9e-224 781.6 640 62.0
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 8.3e-224 780.8 647 62.4
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 9.2e-223 777.3 644 62.9
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 1.7e-221 773.1 647 61.5
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 1.7e-221 773.1 619 63.7
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 1.5e-220 770.0 633 63.3
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 1.0e-218 763.8 655 59.5
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 1.4e-218 763.5 646 60.7
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 6.8e-218 761.1 595 63.5
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 2.2e-216 756.1 640 60.5
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.2e-216 756.1 647 60.6
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 2.9e-216 755.7 658 59.1
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 3.2e-215 752.3 660 60.0
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 9.2e-215 750.7 652 60.0
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 1.3e-213 746.9 667 58.3
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 3.9e-213 745.3 667 58.3
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 2.1e-211 739.6 655 58.3
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 1.1e-210 737.3 652 59.5
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 9.8e-209 730.7 641 58.3
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 9.8e-209 730.7 618 60.7
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.3e-208 730.3 641 58.3
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.9e-204 716.5 654 58.3
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 2.6e-201 706.1 656 57.8
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 1.0e-197 694.1 650 57.2
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 2.3e-197 693.0 651 56.4
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 1.5e-196 690.3 646 56.2
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 6.8e-194 681.4 649 56.1
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 4.4e-193 678.7 681 55.9
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 2.2e-192 676.4 651 56.2
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 8.1e-187 657.9 556 60.6
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 1.3e-184 650.6 644 55.6
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.1e-178 630.9 525 61.7
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 8.4e-176 621.3 554 56.7
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 3.2e-175 619.4 646 52.9
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 5.3e-170 602.1 641 54.1
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.7e-166 589.7 630 53.0
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 4.6e-166 589.0 690 49.9
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.1e-162 577.8 631 50.2
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 2.5e-148 530.0 445 60.2
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 7.4e-140 501.9 635 45.8
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 8.2e-139 498.4 646 43.5
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 1.2e-137 494.6 497 52.1
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 8.5e-136 488.4 664 42.5
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 4.7e-134 482.6 575 49.2
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 7.4e-132 475.3 628 42.8
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 9.4e-127 458.4 648 43.4
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 5.6e-103 379.4 625 37.1
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 5.2e-77 293.1 331 50.2
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 4.3e-71 273.5 237 56.5
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.3e-43 182.2 157 56.7
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 1.9e-42 178.3 122 72.1
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 1.6e-41 175.3 278 39.6
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 3.3e-39 167.5 280 40.4
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 2.6e-36 157.9 107 71.0
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.7e-35 155.2 156 50.0
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 2.2e-35 154.8 107 70.1
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 8.5e-35 152.9 229 39.7
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 1.9e-34 151.8 141 53.9
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 1.6e-33 148.7 140 58.6
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.5e-31 142.1 156 50.0
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 2.0e-31 141.7 131 54.2
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 2.4e-29 134.8 97 68.0
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 4.1e-29 134.0 141 53.2
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 6.9e-29 133.3 160 46.2
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 2.9e-27 127.9 86 70.9
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.9e-24 117.5 86 64.0
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 3.3e-23 114.4 80 72.5
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 1.3e-22 112.5 84 67.9
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.5e-20 104.4 78 64.1
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 7.7e-20 103.2 99 51.5
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.2e-17 95.9 88 60.2
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 5.3e-13 80.5 96 46.9
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 2.2e-11 75.1 54 68.5
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 2.2e-11 75.1 89 44.9
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 3.2e-10 71.2 59 57.6
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 8.3e-06 56.6 570 20.4


User provided reference genes

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