Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p33860 Brassica napus HOM05D000187 ORTHO05D000230 1.2e-180 636.3 317 100.0
BolC6t38499H Brassica oleracea HOM05D000187 ORTHO05D000230 2.7e-143 512.3 260 98.1
A07p29680 Brassica napus HOM05D000187 ORTHO05D000230 1.1e-115 420.6 266 83.5
BraA07t30608Z Brassica rapa HOM05D000187 ORTHO05D000230 1.2e-114 417.2 260 83.8
BcaB03g15727 Brassica carinata HOM05D000187 ORTHO05D000230 8.1e-108 394.4 271 79.7
Sp5g28950 Schrenkiella parvula HOM05D000187 ORTHO05D000230 1.7e-94 350.1 288 69.8
BolC6t39826H Brassica oleracea HOM05D000187 ORTHO05D000230 3.3e-85 319.3 281 65.1
A07p39620 Brassica napus HOM05D000187 ORTHO05D000230 2.8e-84 316.2 281 65.1
BraA07t31511Z Brassica rapa HOM05D000187 ORTHO05D000230 2.8e-84 316.2 281 65.1
Thhalv10018747m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 6.2e-84 315.1 316 61.4
C06p47910 Brassica napus HOM05D000187 ORTHO05D000230 6.9e-83 311.6 281 64.4
AT1G73760 Arabidopsis thaliana HOM05D000187 ORTHO05D000230 1.4e-75 287.3 295 59.7
CARHR066830 Cardamine hirsuta HOM05D000187 ORTHO05D000230 6.9e-75 285.0 297 60.6
AL2G33570 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 8.4e-73 278.1 289 58.5
Carub.0002s2051 Capsella rubella HOM05D000187 ORTHO05D000230 2.3e-70 270.0 292 57.2
BcaC08g45623 Brassica carinata HOM05D000187 ORTHO05D000230 5.3e-67 258.8 123 100.0
Aa31LG4G4090 Aethionema arabicum HOM05D000187 ORTHO05D000230 2.2e-57 226.9 315 49.2
BcaB03g15081 Brassica carinata HOM05D000187 ORTHO05D000230 1.1e-56 224.6 305 51.8
THA.LOC104812152 Tarenaya hassleriana HOM05D000187 ORTHO05D000230 1.4e-54 217.6 312 48.4
Aa31LG7G3050 Aethionema arabicum HOM05D000187 ORTHO05D000230 8.8e-54 214.9 313 48.6
Sp1g16030 Schrenkiella parvula HOM05D000187 ORTHO05D000230 3.8e-49 199.5 276 50.0
Thhalv10007935m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 7.2e-48 195.3 262 46.9
BolC8t49464H Brassica oleracea HOM05D000187 ORTHO05D000230 7.9e-47 191.8 264 48.9
C08p18300 Brassica napus HOM05D000187 ORTHO05D000230 2.3e-46 190.3 262 48.5
A08p30610 Brassica napus HOM05D000187 ORTHO05D000230 2.0e-45 187.2 267 48.3
Carub.0001s1767 Capsella rubella HOM05D000187 ORTHO05D000230 2.6e-45 186.8 272 49.6
AL1G30330 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 2.4e-43 180.3 265 47.5
BraA08t34992Z Brassica rapa HOM05D000187 ORTHO05D000230 3.5e-42 176.4 267 46.4
CARHR018580 Cardamine hirsuta HOM05D000187 ORTHO05D000230 2.4e-35 153.7 278 45.0
Thecc.03G042900 Theobroma cacao HOM05D000187 ORTHO05D000230 1.2e-34 151.4 304 38.2
Duzib205G0431 Durio zibethinus HOM05D000187 ORTHO05D000230 1.6e-34 151.0 297 38.0
Sed0018606 Sechium edule HOM05D000187 ORTHO05D000230 4.5e-34 149.4 272 40.1
Atru.chr9.914 Acer truncatum HOM05D000187 ORTHO05D000230 2.2e-33 147.1 286 39.5
Glyma.05G241900 Glycine max HOM05D000187 ORTHO05D000230 3.8e-33 146.4 254 41.7
Gohir.A07G059400 Gossypium hirsutum HOM05D000187 ORTHO05D000230 1.9e-32 144.1 276 37.7
Gorai.001G067700 Gossypium raimondii HOM05D000187 ORTHO05D000230 1.6e-31 141.0 282 37.6
Phvul.002G325200 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 6.1e-31 139.0 240 40.8
TWI81G0466 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 8.0e-31 138.7 248 40.3
VMungo0251G2579 Vigna mungo HOM05D000187 ORTHO05D000230 8.0e-31 138.7 261 40.2
MELO3C002110.2 Cucumis melo HOM05D000187 ORTHO05D000230 1.0e-30 138.3 262 39.3
Gohir.D07G064200 Gossypium hirsutum HOM05D000187 ORTHO05D000230 3.0e-30 136.7 285 36.5
Manes.01G015300 Manihot esculenta HOM05D000187 ORTHO05D000230 4.0e-30 136.3 267 37.1
Glyma.08G049400 Glycine max HOM05D000187 ORTHO05D000230 8.8e-30 135.2 268 38.8
ClCG04G010890 Citrullus lanatus HOM05D000187 ORTHO05D000230 1.2e-29 134.8 251 38.6
CsaV3_1G006940 Cucumis sativus L. HOM05D000187 ORTHO05D000230 1.5e-29 134.4 263 38.8
Phvul.004G153501 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 4.4e-29 132.9 256 38.3
QL10p026760 Quercus lobata HOM05D000187 ORTHO05D000230 5.7e-29 132.5 273 37.7
Duzib068G0915 Durio zibethinus HOM05D000187 ORTHO05D000230 1.3e-28 131.3 275 36.7
Manes.05G133100 Manihot esculenta HOM05D000187 ORTHO05D000230 2.8e-28 130.2 270 37.4
DCAR_023221 Daucus carota HOM05D000187 ORTHO05D000230 8.3e-28 128.6 236 39.4
Dinv12227 Davidia involucrata HOM05D000187 ORTHO05D000230 1.8e-27 127.5 199 41.2
VMungo0464G0328 Vigna mungo HOM05D000187 ORTHO05D000230 1.2e-26 124.8 249 37.8
Psat7g005520 Pisum sativum HOM05D000187 ORTHO05D000230 2.7e-26 123.6 228 40.4
Hma1.2p1_2594F.1_g325080 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 5.9e-26 122.5 242 38.0
TWI60G1712 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 5.9e-26 122.5 270 37.4
CSS0000068 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 2.9e-25 120.2 320 34.4
CiPaw.16G089300 Carya illinoinensis HOM05D000187 ORTHO05D000230 2.9e-25 120.2 263 37.3
Prupe.5G225100 Prunus persica HOM05D000187 ORTHO05D000230 2.9e-25 120.2 323 34.7
RcHm_v2.0_Chr7g0179401 Rosa chinensis HOM05D000187 ORTHO05D000230 1.5e-24 117.9 287 33.8
Dinv17509 Davidia involucrata HOM05D000187 ORTHO05D000230 2.5e-24 117.1 201 38.8
Medtr8g106240 Medicago truncatula HOM05D000187 ORTHO05D000230 1.6e-23 114.4 226 38.1
Lalb_Chr09g0330701 Lupinus albus HOM05D000187 ORTHO05D000230 2.8e-23 113.6 256 35.2
PGR083G2722 Punica granatum HOM05D000187 ORTHO05D000230 2.8e-23 113.6 289 36.7
Cfa019728 Carpinus fangiana HOM05D000187 ORTHO05D000230 3.6e-23 113.2 286 35.7
Nitab4.5_0000150g0050 Nicotiana tabacum HOM05D000187 ORTHO05D000230 3.6e-23 113.2 267 34.5
CSS0006855 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 4.7e-23 112.8 319 32.6
Lalb_Chr14g0370951 Lupinus albus HOM05D000187 ORTHO05D000230 4.7e-23 112.8 233 33.5
Potri.015G043900 Populus trichocarpa HOM05D000187 ORTHO05D000230 4.7e-23 112.8 299 34.4
Lj5A153T49 Lonicera japonica HOM05D000187 ORTHO05D000230 6.1e-23 112.5 263 38.8
MD06G1220700 Malus domestica HOM05D000187 ORTHO05D000230 1.4e-22 111.3 272 33.8
arahy.Tifrunner.gnm1.ann1.P10SDX Arachis hypogaea HOM05D000187 ORTHO05D000230 1.8e-22 110.9 242 36.8
Ciclev10020624m.g Citrus clementina HOM05D000187 ORTHO05D000230 1.8e-22 110.9 243 34.6
Potri.012G053800 Populus trichocarpa HOM05D000187 ORTHO05D000230 1.8e-22 110.9 308 32.5
AT1G17970 Arabidopsis thaliana HOM05D000187 ORTHO05D000230 2.3e-22 110.5 245 42.4
arahy.Tifrunner.gnm1.ann1.X8S18P Arachis hypogaea HOM05D000187 ORTHO05D000230 2.3e-22 110.5 234 36.3
FAN08G2200 Fragaria x ananassa HOM05D000187 ORTHO05D000230 2.3e-22 110.5 260 36.2
Nitab4.5_0006894g0010 Nicotiana tabacum HOM05D000187 ORTHO05D000230 4.0e-22 109.8 279 32.6
CiPaw.15G135800 Carya illinoinensis HOM05D000187 ORTHO05D000230 5.2e-22 109.4 202 36.6
FAN18G3138 Fragaria x ananassa HOM05D000187 ORTHO05D000230 6.8e-22 109.0 289 34.6
Nitab4.5_0001456g0140 Nicotiana tabacum HOM05D000187 ORTHO05D000230 6.8e-22 109.0 278 32.7
Glyma.09G180300 Glycine max HOM05D000187 ORTHO05D000230 8.8e-22 108.6 260 33.5
Actinidia18917 Actinidia chinensis HOM05D000187 ORTHO05D000230 1.5e-21 107.8 266 35.7
arahy.Tifrunner.gnm1.ann1.UBBI2A Arachis hypogaea HOM05D000187 ORTHO05D000230 1.5e-21 107.8 235 35.7
MSTRG.9274 Avicennia marina HOM05D000187 ORTHO05D000230 1.5e-21 107.8 285 34.7
FAN04G1576 Fragaria x ananassa HOM05D000187 ORTHO05D000230 2.0e-21 107.5 266 35.0
TPR.G28409 Trifolium pratense HOM05D000187 ORTHO05D000230 2.6e-21 107.1 264 34.8
FAN13G0080 Fragaria x ananassa HOM05D000187 ORTHO05D000230 3.4e-21 106.7 263 35.4
Cpa.g.sc3.461 Carica papaya HOM05D000187 ORTHO05D000230 4.4e-21 106.3 199 42.7
TPR.G12745 Trifolium pratense HOM05D000187 ORTHO05D000230 4.4e-21 106.3 230 35.2
Hund02352 Selenicereus undatus HOM05D000187 ORTHO05D000230 9.8e-21 105.1 279 35.1
TAR622G0266 Trochodendron aralioides HOM05D000187 ORTHO05D000230 9.8e-21 105.1 263 33.1
HanXRQChr17g0559771 Helianthus annuus HOM05D000187 ORTHO05D000230 1.7e-20 104.4 271 34.7
Nn4g23961 Nelumbo nucifera HOM05D000187 ORTHO05D000230 2.2e-20 104.0 302 33.1
FvH4_5g16700 Fragaria vesca HOM05D000187 ORTHO05D000230 2.8e-20 103.6 290 33.1
Nn3g17958 Nelumbo nucifera HOM05D000187 ORTHO05D000230 3.7e-20 103.2 271 32.5
Lsat_1_v5_gn_8_142020 Lactuca sativa HOM05D000187 ORTHO05D000230 1.1e-19 101.7 255 33.7
MD14G1230200 Malus domestica HOM05D000187 ORTHO05D000230 1.4e-19 101.3 212 35.8
Nitab4.5_0004703g0060 Nicotiana tabacum HOM05D000187 ORTHO05D000230 1.4e-19 101.3 195 35.9
Sabra12G0037600 Salix brachista HOM05D000187 ORTHO05D000230 1.4e-19 101.3 335 30.4
TAR535G0001 Trochodendron aralioides HOM05D000187 ORTHO05D000230 1.4e-19 101.3 259 34.0
Actinidia35102 Actinidia chinensis HOM05D000187 ORTHO05D000230 2.4e-19 100.5 204 36.8
Medtr6g082620 Medicago truncatula HOM05D000187 ORTHO05D000230 2.4e-19 100.5 201 36.3
PSO017G0577 Papaver somniferum HOM05D000187 ORTHO05D000230 3.1e-19 100.1 206 32.5
Psat1g035040 Pisum sativum HOM05D000187 ORTHO05D000230 3.1e-19 100.1 248 35.5
Peaxi162Scf00683g00346 Petunia axillaris HOM05D000187 ORTHO05D000230 4.1e-19 99.8 191 39.3
Lj4g0024779 Lotus japonicus HOM05D000187 ORTHO05D000230 5.4e-19 99.4 230 36.1
arahy.Tifrunner.gnm1.ann1.35GK0Y Arachis hypogaea HOM05D000187 ORTHO05D000230 9.2e-19 98.6 249 36.1
Solyc03g118840.3 Solanum lycopersicum HOM05D000187 ORTHO05D000230 9.2e-19 98.6 295 32.2
Sopen03g037790 Solanum pennellii HOM05D000187 ORTHO05D000230 1.6e-18 97.8 296 31.8
Lj2g0003886 Lotus japonicus HOM05D000187 ORTHO05D000230 2.0e-18 97.4 240 32.5
Sed0023942 Sechium edule HOM05D000187 ORTHO05D000230 2.0e-18 97.4 222 36.5
Duzib084G0101 Durio zibethinus HOM05D000187 ORTHO05D000230 3.5e-18 96.7 300 32.0
Glyma.07G097700 Glycine max HOM05D000187 ORTHO05D000230 3.5e-18 96.7 202 35.6
GSVIVG01008343001 Vitis vinifera HOM05D000187 ORTHO05D000230 3.5e-18 96.7 131 42.7
Migut.D01604 Erythranthe guttata HOM05D000187 ORTHO05D000230 5.9e-18 95.9 286 33.6
Oeu017512.1 Olea europaea HOM05D000187 ORTHO05D000230 1.0e-17 95.1 213 33.8
PSO478G0597 Papaver somniferum HOM05D000187 ORTHO05D000230 1.0e-17 95.1 206 31.6
Eucgr.B00829 Eucalyptus grandis HOM05D000187 ORTHO05D000230 1.7e-17 94.4 287 33.8
Peaxi162Scf01127g00032 Petunia axillaris HOM05D000187 ORTHO05D000230 1.7e-17 94.4 270 32.2
Sc04g0003340 Simmondsia chinensis HOM05D000187 ORTHO05D000230 2.3e-17 94.0 292 31.2
PGSC0003DMG400005742 Solanum tuberosum HOM05D000187 ORTHO05D000230 3.8e-17 93.2 215 34.0
Aqoxy3G00194 Aquilegia oxysepala HOM05D000187 ORTHO05D000230 6.6e-17 92.4 262 32.8
Cc04_g06840 Coffea canephora HOM05D000187 ORTHO05D000230 6.6e-17 92.4 292 30.1
Oeu000988.1 Olea europaea HOM05D000187 ORTHO05D000230 6.6e-17 92.4 223 34.1
Sabra15G0041300 Salix brachista HOM05D001562 ORTHO05D000230 4.7e-15 86.3 264 32.6
Lalb_Chr24g0397961 Lupinus albus HOM05D000187 ORTHO05D000230 6.1e-15 85.9 213 33.3
TAR374G1571 Trochodendron aralioides HOM05D000187 ORTHO05D000230 1.4e-14 84.7 203 29.6
Ah.11g045140 Amaranthus hybridus HOM05D000187 ORTHO05D000230 2.3e-14 84.0 251 33.1
Lalb_Chr16g0387321 Lupinus albus HOM05D000187 ORTHO05D000230 3.0e-14 83.6 236 35.2
Rhsim08G0130200 Rhododendron simsii HOM05D000187 ORTHO05D000230 5.2e-14 82.8 271 32.5
Dinv16139 Davidia involucrata HOM05D000187 ORTHO05D000230 6.8e-14 82.4 211 32.7
Hma1.2p1_1614F.1_g293660 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 5.7e-13 79.3 128 36.7
SGA_v2.0_scaffold168G38479 Striga asiatica HOM05D000187 ORTHO05D000230 9.8e-13 78.6 202 33.2
EL10Ac5g11483 Beta vulgaris HOM05D000187 ORTHO05D000230 8.3e-12 75.5 273 30.4
vmacro16433 Vaccinium macrocarpon HOM05D000187 ORTHO05D000230 1.8e-11 74.3 321 27.1
MBI09_g25153_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000230 4.1e-11 73.2 198 33.8
Ca_25470_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 1.1e-08 65.1 149 33.6
vmacro17698 Vaccinium macrocarpon HOM05D000187 ORTHO05D000230 1.5e-08 64.7 321 25.9
arahy.Tifrunner.gnm1.ann1.FY93PX Arachis hypogaea HOM05D006836 ORTHO05D000230 2.5e-08 63.9 157 33.8
AUR62033794 Chenopodium quinoa HOM05D000187 ORTHO05D000230 2.5e-08 63.9 133 34.6
Rhsim12G0141500 Rhododendron simsii HOM05D000187 ORTHO05D000230 4.3e-08 63.2 158 31.0
CDE08G0213 Ceratophyllum demersum HOM05D000187 ORTHO05D000230 5.6e-08 62.8 222 29.7
Ca_17238_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 1.6e-07 61.2 162 34.6
AUR62029913 Chenopodium quinoa HOM05D000187 ORTHO05D000230 8.0e-07 58.9 131 31.3
CDE06G1804 Ceratophyllum demersum HOM05D000187 ORTHO05D000230 1.4e-06 58.2 268 28.7
Sabra15G0041500 Salix brachista HOM05D000187 ORTHO05D000230 4.0e-06 56.6 77 42.9
Hma1.2p1_1283F.1_g272850 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 5.2e-06 56.2 107 38.3
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 5.2e-06 56.2 224 28.6


User provided reference genes

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