Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 1.6e-244 849.0 418 100.0
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 1.6e-244 849.0 418 100.0
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 1.6e-244 849.0 418 100.0
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 1.3e-233 812.8 418 95.7
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 2.6e-231 805.1 418 95.0
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 1.7e-230 802.4 418 93.5
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 2.0e-207 725.7 429 82.5
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 3.2e-205 718.4 429 81.6
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 4.2e-205 718.0 429 81.6
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 4.2e-205 718.0 429 81.6
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 4.2e-205 718.0 429 81.6
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 1.8e-203 712.6 429 81.8
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 1.1e-202 709.9 437 80.1
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 1.5e-202 709.5 442 79.0
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 5.7e-202 707.6 435 79.8
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 3.6e-196 688.3 427 78.9
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 3.3e-194 681.8 432 76.9
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 6.7e-187 657.5 435 73.6
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 1.2e-154 550.4 437 63.2
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 1.5e-154 550.1 438 62.6
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 2.0e-154 549.7 431 63.6
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 3.7e-153 545.4 430 62.6
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 5.4e-152 541.6 437 61.1
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 3.5e-151 538.9 441 60.5
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 6.0e-151 538.1 430 60.2
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 1.7e-150 536.6 424 61.8
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 5.0e-150 535.0 432 61.1
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.5e-149 532.7 415 64.8
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 9.5e-149 530.8 437 60.9
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.8e-147 526.6 431 62.2
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.5e-146 523.5 421 60.8
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.6e-146 522.7 422 62.3
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 2.6e-146 522.7 437 61.1
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 2.6e-146 522.7 421 60.1
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 5.8e-146 521.5 421 60.3
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 9.8e-146 520.8 379 64.4
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 2.9e-145 519.2 425 59.3
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 3.7e-145 518.8 409 62.8
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 3.7e-145 518.8 356 68.0
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 4.9e-145 518.5 421 60.3
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 4.9e-145 518.5 439 58.8
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 6.4e-145 518.1 419 60.9
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 3.2e-144 515.8 420 60.2
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 7.1e-144 514.6 347 68.9
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 1.2e-143 513.8 418 57.9
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 1.2e-143 513.8 432 58.3
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 6.0e-143 511.5 456 59.4
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 1.0e-142 510.8 411 61.6
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 1.0e-142 510.8 422 59.7
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 1.3e-142 510.4 411 60.1
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 1.7e-142 510.0 424 60.8
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 2.3e-142 509.6 408 61.8
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 2.3e-142 509.6 342 68.1
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 3.0e-142 509.2 345 68.1
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 3.9e-142 508.8 436 58.3
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 3.9e-142 508.8 416 59.1
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 5.1e-142 508.4 421 59.9
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 6.6e-142 508.1 418 60.3
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 8.6e-142 507.7 435 58.6
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 8.6e-142 507.7 438 58.4
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 1.9e-141 506.5 425 58.8
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 4.3e-141 505.4 422 60.0
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 7.3e-141 504.6 412 60.9
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 1.6e-140 503.4 347 66.9
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 3.6e-140 502.3 428 59.3
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 4.7e-140 501.9 244 96.7
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 4.7e-140 501.9 420 59.3
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 6.2e-140 501.5 415 60.2
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 1.4e-139 500.4 446 56.5
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.8e-139 500.0 433 58.0
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 2.3e-139 499.6 451 55.4
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 4.0e-139 498.8 419 58.9
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 8.9e-139 497.7 413 60.3
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 1.2e-138 497.3 411 60.1
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 1.5e-138 496.9 409 61.4
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 2.0e-138 496.5 414 58.5
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 3.4e-138 495.7 414 58.7
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 3.4e-138 495.7 421 59.9
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 4.4e-138 495.4 350 65.4
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 5.8e-138 495.0 435 57.7
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 7.6e-138 494.6 424 58.7
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 9.9e-138 494.2 416 60.3
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.3e-137 493.8 429 57.1
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 1.3e-137 493.8 350 65.1
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 1.1e-136 490.7 411 58.4
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 3.2e-136 489.2 407 58.7
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 4.1e-136 488.8 407 58.5
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 5.4e-136 488.4 415 57.6
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 7.1e-136 488.0 423 57.2
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 9.2e-136 487.6 415 58.1
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 1.6e-135 486.9 411 57.7
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 2.7e-135 486.1 442 56.1
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 2.7e-135 486.1 415 58.1
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 2.7e-135 486.1 415 59.3
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 4.6e-135 485.3 401 60.3
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 4.6e-135 485.3 415 57.6
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 4.6e-135 485.3 440 56.8
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 6.0e-135 485.0 412 58.5
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 6.0e-135 485.0 414 57.0
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 1.3e-134 483.8 410 57.8
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 2.3e-134 483.0 414 58.7
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 2.3e-134 483.0 419 57.5
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 5.1e-134 481.9 426 55.9
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 1.9e-133 479.9 413 57.9
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 4.3e-133 478.8 407 58.7
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 5.6e-133 478.4 414 58.9
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 5.6e-133 478.4 419 57.5
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 2.8e-132 476.1 411 58.4
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.1e-131 474.2 415 56.9
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 1.4e-131 473.8 346 63.6
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.4e-131 473.8 417 57.1
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 1.4e-131 473.8 352 61.6
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 8.9e-131 471.1 414 58.0
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 2.6e-130 469.5 333 65.5
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 1.3e-129 467.2 407 56.5
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 2.9e-129 466.1 413 56.2
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 1.2e-127 460.7 416 55.3
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 4.3e-125 452.2 439 54.9
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 4.3e-125 452.2 406 55.9
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 1.3e-124 450.7 350 60.6
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 1.6e-124 450.3 428 54.7
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 4.8e-124 448.7 318 67.9
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 1.8e-123 446.8 423 54.1
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 4.0e-123 445.7 430 53.5
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 4.0e-123 445.7 413 56.2
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 9.0e-123 444.5 416 53.1
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 6.0e-119 431.8 415 55.4
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 6.0e-119 431.8 408 53.7
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 6.0e-119 431.8 424 53.5
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 6.0e-119 431.8 420 52.9
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.9e-117 426.8 430 49.5
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 4.3e-117 425.6 398 55.3
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 7.4e-117 424.9 419 53.5
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 1.3e-116 424.1 419 53.0
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 2.8e-116 422.9 411 54.7
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 2.4e-115 419.9 423 52.7
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 3.4e-114 416.0 342 57.6
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 5.8e-114 415.2 292 65.4
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.6e-111 407.1 405 51.1
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 7.6e-106 388.3 377 51.2
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 2.9e-105 386.3 340 54.4
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 4.6e-103 379.0 394 49.2
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 7.9e-103 378.3 340 53.5
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 3.0e-102 376.3 276 62.7
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 6.7e-102 375.2 373 50.1
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 2.8e-100 369.8 429 45.2
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 1.3e-97 360.9 307 56.4
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 1.7e-97 360.5 428 47.7
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 5.0e-97 359.0 252 63.5
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 1.4e-96 357.5 394 47.2
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 4.8e-92 342.4 240 63.8
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 1.3e-89 334.3 359 47.9
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.3e-89 334.3 341 47.8
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 3.2e-88 329.7 346 48.0
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 7.2e-88 328.6 343 47.2
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 2.4e-83 313.5 237 60.8
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 4.1e-83 312.8 351 47.0
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 5.9e-82 308.9 387 43.9
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 7.7e-82 308.5 295 56.9
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 3.9e-78 296.2 330 47.6
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 7.4e-77 292.0 237 56.1
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.1e-75 288.1 346 42.8
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.6e-74 283.5 351 42.2
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 3.2e-72 276.6 241 52.7
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.4e-70 271.2 339 41.0
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 8.8e-70 268.5 344 39.8
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.5e-69 267.7 350 40.9
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 4.8e-68 262.7 348 40.2
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.3e-62 243.8 346 37.0
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 1.3e-57 228.0 376 36.4
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 2.8e-39 167.2 152 57.2
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 4.1e-35 153.3 154 51.3
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 1.3e-33 148.3 416 27.2
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 2.6e-21 107.5 85 51.8
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 3.8e-20 103.6 122 43.4
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 4.9e-20 103.2 114 43.0
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 2.3e-17 94.4 79 49.4
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 6.2e-15 86.3 130 45.4
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.0e-13 81.3 100 39.0
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 3.2e-11 73.9 87 44.8
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.4e-06 57.8 67 31.3
Nn1g01454 Nelumbo nucifera HOM05D003764 ORTHO05D004356 5.3e-06 56.6 36 69.4
Prupe.6G163800 Prunus persica HOM05D003764 ORTHO05D335910 6.9e-06 56.2 53 56.6


User provided reference genes

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