Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 9.1e-95 350.1 165 100.0
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 9.1e-95 350.1 165 100.0
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 2.6e-94 348.6 165 99.4
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 1.1e-89 333.2 166 95.2
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 9.7e-89 330.1 166 94.6
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 2.7e-86 322.0 166 89.2
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 1.2e-83 313.2 168 88.1
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 1.2e-83 313.2 168 88.1
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 2.7e-83 312.0 168 87.5
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 2.7e-83 312.0 168 87.5
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.0e-82 310.1 168 88.1
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 1.8e-82 309.3 168 87.5
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 2.0e-81 305.8 168 85.7
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 5.7e-81 304.3 168 85.1
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 4.1e-79 298.1 168 83.3
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 5.4e-79 297.7 168 83.3
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 5.9e-78 294.3 168 82.7
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.0e-77 293.5 168 82.7
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.2e-70 270.0 168 76.8
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.0e-69 266.9 168 74.4
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.0e-69 266.9 168 73.2
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 5.0e-69 264.6 168 74.4
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.1e-68 263.5 168 74.4
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 1.9e-68 262.7 168 73.2
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 3.3e-68 261.9 168 72.6
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 5.6e-68 261.2 168 72.0
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 5.6e-68 261.2 168 72.6
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 5.6e-68 261.2 168 72.6
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 7.3e-68 260.8 168 72.0
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.2e-67 260.0 168 72.0
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 4.7e-67 258.1 168 70.8
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 4.7e-67 258.1 168 70.8
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 3.0e-66 255.4 173 72.3
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 1.7e-61 239.6 170 64.1
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 7.3e-60 234.2 168 63.1
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 9.5e-60 233.8 168 61.9
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 2.1e-59 232.6 168 63.1
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.1e-59 232.6 168 63.1
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.1e-59 232.6 168 63.1
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.7e-59 231.5 168 62.5
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 1.4e-58 229.9 167 62.3
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 1.4e-58 229.9 167 62.3
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 1.8e-58 229.6 168 63.7
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 2.3e-58 229.2 168 65.5
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 4.0e-58 228.4 168 59.5
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 6.8e-58 227.6 168 61.9
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 61.9
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 3.4e-57 225.3 168 60.7
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 5.8e-57 224.6 168 60.1
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 5.8e-57 224.6 169 62.1
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 9.8e-57 223.8 168 63.7
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 1.3e-56 223.4 167 59.3
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 1.7e-56 223.0 168 60.7
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.7e-56 223.0 168 61.9
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 2.2e-56 222.6 168 60.7
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.4e-55 219.9 168 60.7
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.2e-55 218.8 168 61.9
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 5.4e-55 218.0 168 60.7
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 5.4e-55 218.0 163 60.1
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 61.3
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.6e-54 216.5 168 61.3
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 1.6e-54 216.5 170 61.2
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.0e-54 216.1 168 60.1
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.0e-54 216.1 168 60.1
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 2.0e-54 216.1 168 60.7
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 3.5e-54 215.3 168 59.5
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 4.6e-54 214.9 170 60.0
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 6.0e-54 214.5 172 57.6
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.7e-53 213.0 168 58.9
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 2.3e-53 212.6 168 57.7
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 5.0e-53 211.5 168 58.3
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.1e-52 210.3 170 56.5
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.1e-52 210.3 168 56.5
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 2.5e-52 209.1 168 60.7
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 3.3e-52 208.8 170 55.9
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 4.3e-52 208.4 170 57.1
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 2.8e-51 205.7 168 57.7
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 2.8e-51 205.7 168 54.8
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 1.1e-50 203.8 168 58.9
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.8e-50 203.0 153 63.4
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 3.1e-50 202.2 170 57.1
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 3.1e-50 202.2 168 58.9
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 1.5e-49 199.9 205 48.8
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 3.4e-49 198.7 168 58.3
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 4.4e-49 198.4 179 53.1
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.3e-48 196.8 168 57.1
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 1.7e-48 196.4 168 54.2
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.2e-48 196.1 169 58.6
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.2e-48 196.1 169 58.6
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 2.2e-48 196.1 168 57.7
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 4.9e-48 194.9 165 52.1
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 4.1e-47 191.8 168 53.6
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 7.1e-47 191.0 168 53.6
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 1.2e-46 190.3 169 53.8
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 2.1e-46 189.5 156 51.3
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 2.1e-46 189.5 184 53.3
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.7e-46 189.1 168 52.4
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 3.5e-46 188.7 141 62.4
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 4.6e-46 188.3 201 46.3
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 6.0e-46 188.0 163 50.3
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 1.0e-45 187.2 172 52.3
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.3e-45 186.8 168 51.2
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 2.3e-45 186.0 156 51.3
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 6.6e-45 184.5 168 51.8
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 1.5e-44 183.3 158 50.0
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 5.6e-44 181.4 168 50.6
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 5.6e-44 181.4 152 52.6
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 2.1e-43 179.5 182 47.8
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 6.2e-43 177.9 137 56.9
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.4e-42 176.8 205 44.9
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 3.1e-42 175.6 168 54.2
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 8.9e-42 174.1 237 40.1
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.4e-41 172.2 125 60.0
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 4.1e-39 165.2 193 45.6
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 9.2e-39 164.1 140 57.9
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 9.2e-39 164.1 167 48.5
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.7e-38 162.5 145 51.7
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 6.6e-37 157.9 190 43.7
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 9.6e-36 154.1 173 45.1
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 3.6e-35 152.1 169 46.2
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 4.0e-34 148.7 189 44.4
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 6.9e-34 147.9 168 47.0
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 1.2e-33 147.1 169 45.0
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 2.0e-33 146.4 102 63.7
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 3.4e-33 145.6 151 50.3
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 2.9e-32 142.5 173 43.9
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 3.8e-32 142.1 108 55.6
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.1e-31 140.6 169 43.2
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 2.4e-31 139.4 125 52.8
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 2.5e-28 129.4 168 42.3
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 9.0e-26 120.9 87 60.9
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 1.0e-21 107.5 171 36.3
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 5.1e-21 105.1 109 47.7
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.5e-20 103.6 97 55.7
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 4.3e-20 102.1 169 34.3
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 5.6e-20 101.7 184 32.6
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 2.8e-19 99.4 163 34.4
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 3.6e-19 99.0 142 38.7
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 1.1e-18 97.4 162 38.3
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 9.9e-17 90.9 97 41.2
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 4.9e-16 88.6 169 30.8
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 4.9e-16 88.6 52 71.2
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 3.2e-15 85.9 171 30.4
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 7.4e-12 74.7 85 52.9
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 3.1e-10 69.3 67 49.3


User provided reference genes

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