Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 2.2e-135 486.1 349 100.0
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 2.2e-135 486.1 349 100.0
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 2.2e-135 486.1 349 100.0
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 5.7e-131 471.5 352 94.0
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.1e-129 467.2 352 90.3
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 2.0e-123 446.4 351 82.6
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.9e-110 403.3 354 83.1
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.2e-107 394.0 357 81.2
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 1.2e-107 394.0 350 69.1
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 1.2e-107 394.0 350 69.1
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 1.2e-107 394.0 350 69.1
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 7.5e-107 391.3 357 77.9
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 6.4e-106 388.3 352 70.7
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.4e-105 386.3 358 77.9
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 2.7e-104 382.9 350 71.7
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 6.0e-104 381.7 350 74.3
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 1.0e-103 380.9 364 76.4
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 3.9e-103 379.0 362 80.9
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 8.6e-95 351.3 351 67.5
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.5e-94 350.5 351 66.7
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 3.3e-94 349.4 353 67.4
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 3.3e-94 349.4 351 66.7
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 3.3e-94 349.4 353 67.4
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 8.4e-90 334.7 351 60.4
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.1e-78 297.7 351 58.1
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 1.5e-75 287.3 352 57.1
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 6.9e-68 261.9 354 56.2
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.1e-65 254.6 350 52.6
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 5.5e-65 252.3 354 55.6
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 7.1e-65 251.9 359 51.0
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 4.6e-64 249.2 354 49.4
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 3.0e-63 246.5 347 58.8
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 8.7e-63 245.0 354 49.2
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 3.3e-62 243.0 355 52.1
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.3e-61 241.1 354 55.4
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 3.1e-60 236.5 366 53.0
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 2.6e-59 233.4 376 55.6
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.9e-57 227.3 370 52.2
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 3.2e-57 226.5 378 52.4
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 3.2e-57 226.5 374 47.1
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 4.2e-57 226.1 359 46.2
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 1.2e-56 224.6 378 51.1
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 2.1e-56 223.8 365 42.5
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 3.5e-56 223.0 350 48.0
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 3.5e-56 223.0 350 48.0
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 3.5e-56 223.0 350 48.0
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 3.5e-56 223.0 350 49.1
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 3.5e-56 223.0 363 54.8
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 6.0e-56 222.2 370 48.1
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.0e-55 219.9 367 43.9
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 6.7e-55 218.8 370 44.1
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 8.7e-55 218.4 375 48.5
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.1e-54 218.0 364 53.6
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 1.9e-54 217.2 377 44.6
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.3e-54 216.5 367 45.0
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 7.4e-54 215.3 371 45.6
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 7.4e-54 215.3 361 52.4
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 7.4e-54 215.3 376 50.8
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 9.7e-54 214.9 373 50.4
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 1.3e-53 214.5 370 55.1
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.6e-53 214.2 367 46.9
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 1.6e-53 214.2 374 47.9
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 2.8e-53 213.4 367 43.9
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.7e-53 213.0 378 48.9
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 4.8e-53 212.6 371 51.5
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 6.3e-53 212.2 367 42.8
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 6.3e-53 212.2 368 45.7
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 6.3e-53 212.2 373 49.3
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 8.2e-53 211.8 370 46.5
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.8e-52 210.7 376 43.4
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 1.8e-52 210.7 380 46.8
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.4e-52 210.3 363 47.7
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.2e-51 208.0 363 47.4
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 3.4e-51 206.5 362 46.7
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 5.9e-51 205.7 367 49.6
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 7.6e-51 205.3 376 45.2
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.3e-50 204.5 356 45.2
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.7e-50 204.1 373 42.9
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.7e-50 204.1 375 47.7
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 5.0e-50 202.6 348 41.1
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 8.5e-50 201.8 348 39.1
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.4e-49 201.1 362 49.2
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 1.4e-49 201.1 369 55.0
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 1.9e-49 200.7 376 51.6
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 2.5e-49 200.3 362 47.8
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 3.2e-49 199.9 384 46.1
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 4.2e-49 199.5 348 40.2
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 7.2e-49 198.7 370 43.2
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 7.2e-49 198.7 381 38.3
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 1.2e-48 198.0 379 39.3
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.6e-48 197.6 347 48.7
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.7e-48 196.8 360 43.6
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.7e-48 196.8 368 42.7
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 4.6e-48 196.1 389 45.5
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 6.1e-48 195.7 348 38.5
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.0e-47 194.9 360 42.8
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 2.3e-47 193.7 367 52.0
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 6.7e-47 192.2 379 44.3
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.1e-46 191.4 353 39.7
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 1.5e-46 191.0 383 45.4
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 4.3e-46 189.5 373 48.8
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 5.7e-46 189.1 381 45.4
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.3e-45 188.0 382 46.3
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 2.2e-45 187.2 374 46.5
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 8.2e-45 185.3 369 40.7
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 2.4e-44 183.7 341 48.7
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.6e-43 180.3 350 38.6
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 2.6e-43 180.3 376 52.1
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 2.2e-42 177.2 378 40.2
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 3.8e-42 176.4 348 41.7
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 6.5e-42 175.6 338 47.3
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 6.5e-42 175.6 340 43.8
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 2.5e-41 173.7 384 49.7
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 1.2e-40 171.4 363 44.9
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.7e-40 170.2 339 37.2
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 2.7e-40 170.2 291 49.8
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.1e-40 169.1 369 41.5
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.0e-39 168.3 295 43.1
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.4e-39 167.9 391 44.2
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.4e-39 167.9 349 40.7
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 3.0e-39 166.8 356 51.4
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 5.1e-39 166.0 363 46.3
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 5.1e-39 166.0 363 44.9
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 5.1e-39 166.0 185 56.8
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 6.7e-39 165.6 342 37.7
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 4.4e-38 162.9 355 47.0
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 5.7e-38 162.5 358 38.8
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 9.7e-38 161.8 273 39.9
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.3e-37 161.4 336 46.4
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.3e-37 161.4 337 48.4
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.7e-37 161.0 182 53.3
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 2.8e-37 160.2 336 40.8
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 4.8e-37 159.5 352 37.5
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.4e-36 157.9 344 42.4
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 4.1e-36 156.4 114 75.4
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 5.3e-36 156.0 372 40.1
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 9.1e-36 155.2 354 47.5
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.2e-35 154.8 361 45.2
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 1.5e-35 154.5 367 42.8
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 3.4e-35 153.3 358 40.5
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 7.7e-35 152.1 294 42.2
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 8.0e-32 142.1 171 48.5
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 1.0e-31 141.7 359 36.5
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 5.2e-31 139.4 353 37.4
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 2.6e-30 137.1 338 44.1
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 8.2e-29 132.1 314 42.0
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 1.8e-28 131.0 361 35.5
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 3.1e-28 130.2 332 32.2
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 2.0e-27 127.5 192 45.3
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 7.7e-27 125.6 246 41.5
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.3e-26 124.8 368 31.2
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.3e-26 124.8 321 46.7
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 1.7e-26 124.4 248 37.5
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 6.5e-26 122.5 256 40.6
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 1.5e-25 121.3 364 42.3
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 2.5e-25 120.6 334 34.1
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 2.1e-24 117.5 357 35.6
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.4e-23 114.8 342 31.6
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 2.3e-23 114.0 177 46.3
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 2.3e-23 114.0 416 27.4
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 8.8e-23 112.1 383 30.3
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.2e-22 111.7 431 31.3
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 7.7e-19 99.0 169 39.6
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 3.8e-18 96.7 355 45.9
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 6.5e-18 95.9 260 30.4
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.5e-17 94.0 336 33.3
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.4e-15 88.2 372 48.7
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-12 78.6 112 44.6
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 1.7e-10 71.2 51 66.7
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 1.7e-10 71.2 51 66.7
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 5.0e-10 69.7 51 68.6
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 5.0e-10 69.7 38 76.3
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 8.0e-08 62.4 190 29.5
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.4e-06 56.6 162 33.3
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.7e-06 56.2 125 29.6
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 9.8e-06 55.5 125 30.4
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 9.8e-06 55.5 125 30.4
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 9.8e-06 55.5 127 30.7


User provided reference genes

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