Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 1.6e-83 312.8 164 100.0
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 1.6e-83 312.8 164 100.0
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 1.4e-82 309.7 164 98.8
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 3.9e-82 308.1 164 98.2
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 5.7e-81 304.3 164 97.0
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.1e-75 285.8 166 92.2
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 2.7e-75 285.4 166 92.8
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 3.9e-74 281.6 164 90.2
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 8.8e-74 280.4 166 89.2
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.0e-73 279.3 166 88.6
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 7.4e-73 277.3 166 89.8
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 7.0e-71 270.8 166 88.0
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 1.2e-70 270.0 166 84.9
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 3.5e-70 268.5 166 86.7
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 5.9e-62 241.1 164 77.4
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 5.0e-61 238.0 164 79.3
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.1e-60 236.9 160 78.1
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.6e-59 233.0 158 80.4
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 6.1e-59 231.1 161 78.9
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 6.1e-59 231.1 161 78.9
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 8.0e-59 230.7 158 79.7
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 2.3e-58 229.2 161 78.3
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.6e-57 225.7 158 77.8
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.7e-56 223.0 155 78.1
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.7e-56 223.0 161 74.5
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 2.8e-56 222.2 159 75.5
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 2.8e-56 222.2 161 72.7
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.4e-55 219.9 149 77.9
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.4e-55 219.9 149 77.9
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 1.7e-53 213.0 161 69.6
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.8e-53 211.8 152 74.3
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 5.0e-53 211.5 166 69.9
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 8.6e-53 210.7 166 68.7
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 8.6e-53 210.7 160 70.6
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 1.1e-52 210.3 161 69.6
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 2.5e-52 209.1 147 75.5
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 4.2e-52 208.4 147 75.5
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.1e-51 206.1 147 77.6
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 2.1e-51 206.1 146 72.6
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 4.7e-51 204.9 130 85.4
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 8.0e-51 204.1 162 67.9
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.0e-50 203.8 159 67.3
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.0e-50 203.8 144 74.3
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 1.0e-50 203.8 166 68.1
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.4e-50 203.4 154 71.4
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 1.8e-50 203.0 130 84.6
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.8e-50 203.0 145 73.8
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.3e-50 202.6 146 71.9
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 2.3e-50 202.6 162 66.7
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 5.2e-50 201.4 162 66.7
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 5.2e-50 201.4 146 72.6
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 5.2e-50 201.4 161 69.6
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 6.8e-50 201.1 161 67.1
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.5e-49 199.9 145 71.7
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.5e-49 199.9 146 73.3
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 3.4e-49 198.7 146 70.5
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 3.4e-49 198.7 146 70.5
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 5.7e-49 198.0 146 69.9
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 7.5e-49 197.6 146 71.2
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 9.8e-49 197.2 137 74.5
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 9.8e-49 197.2 150 68.0
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.7e-48 196.4 155 68.4
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 1.7e-48 196.4 146 71.2
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 2.8e-48 195.7 146 71.9
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 3.7e-48 195.3 142 72.5
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 4.9e-48 194.9 149 67.8
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 8.3e-48 194.1 134 73.9
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 2.4e-47 192.6 135 74.8
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 4.1e-47 191.8 144 71.5
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 5.4e-47 191.4 146 69.9
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 1.6e-46 189.9 158 67.1
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.6e-46 189.9 146 69.9
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.0e-46 189.5 136 73.5
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 2.7e-46 189.1 163 62.6
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 3.5e-46 188.7 132 72.0
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 3.5e-46 188.7 166 61.4
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 4.5e-46 188.3 193 56.5
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 7.8e-46 187.6 175 59.4
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 7.8e-46 187.6 155 62.6
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.0e-45 187.2 149 67.1
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 1.0e-45 187.2 144 70.1
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 1.7e-45 186.4 158 67.1
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.3e-45 186.0 155 63.9
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 3.8e-45 185.3 142 69.7
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 5.0e-45 184.9 149 66.4
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 5.0e-45 184.9 149 67.1
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 5.0e-45 184.9 138 71.0
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 5.0e-45 184.9 139 69.1
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 6.6e-45 184.5 125 77.6
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 6.6e-45 184.5 134 70.9
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.1e-44 183.7 147 66.7
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.5e-44 183.3 156 64.7
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.9e-44 183.0 142 69.0
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 2.5e-44 182.6 142 69.7
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 3.3e-44 182.2 160 59.4
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 5.6e-44 181.4 142 69.0
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 2.1e-43 179.5 139 66.9
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 2.8e-43 179.1 132 70.5
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.8e-43 179.1 133 70.7
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 3.6e-43 178.7 124 75.0
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 1.4e-42 176.8 139 66.9
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 2.3e-42 176.0 102 90.2
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 5.2e-42 174.9 146 65.8
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 1.2e-41 173.7 176 57.4
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.3e-40 170.2 132 70.5
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 4.9e-40 168.3 122 73.0
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 9.2e-39 164.1 157 58.6
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.0e-37 158.3 144 58.3
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.1e-36 157.1 97 82.5
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 9.5e-36 154.1 100 75.0
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 9.5e-36 154.1 116 71.6
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 2.8e-35 152.5 100 75.0
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 4.7e-35 151.8 113 73.5
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 1.8e-34 149.8 100 78.0
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 5.2e-34 148.3 98 77.6
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 8.3e-32 141.0 98 75.5
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 7.0e-31 137.9 117 60.7
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 1.1e-28 130.6 118 58.5
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 2.5e-28 129.4 129 52.7
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 4.3e-28 128.6 147 52.4
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 1.8e-26 123.2 79 75.9
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 4.4e-25 118.6 85 74.1
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 1.3e-24 117.1 95 66.3
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.7e-24 116.7 94 66.0
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 2.2e-24 116.3 112 61.6
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 4.6e-22 108.6 74 77.0
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 2.0e-17 93.2 98 56.1
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 4.9e-16 88.6 55 80.0
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 2.7e-14 82.8 121 42.1
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 3.5e-14 82.4 66 63.6
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 4.6e-14 82.0 121 44.6
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 4.3e-12 75.5 125 41.6
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.8e-11 72.8 54 64.8
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 8.1e-11 71.2 50 76.0
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 8.1e-11 71.2 50 76.0
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 2.2e-08 63.2 51 62.7
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 5.4e-07 58.5 47 68.1
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 7.1e-07 58.2 45 71.1
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 2.7e-06 56.2 30 93.3


User provided reference genes

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