Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 2.0e-261 905.2 453 100.0
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 2.0e-261 905.2 453 100.0
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 2.2e-260 901.7 452 99.6
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 7.9e-250 866.7 455 96.5
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 5.0e-244 847.4 456 95.2
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 8.8e-241 836.6 453 93.8
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 5.9e-237 823.9 452 92.3
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 2.2e-231 805.4 454 90.7
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 6.3e-231 803.9 454 90.5
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.4e-230 802.7 454 90.5
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 5.3e-230 800.8 454 90.1
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 3.5e-229 798.1 454 89.6
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.5e-229 798.1 454 90.3
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 2.9e-228 795.0 455 90.1
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 1.5e-227 792.7 455 90.1
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 2.7e-226 788.5 454 89.9
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 6.8e-225 783.9 455 88.8
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 3.1e-222 775.0 450 87.6
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.8e-220 768.1 452 86.1
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 5.5e-219 764.2 454 86.1
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.3e-209 732.3 453 83.7
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 9.2e-198 693.7 455 78.5
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.4e-193 679.9 451 79.2
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 5.8e-192 674.5 450 77.3
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 7.8e-189 664.1 452 76.5
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.3e-188 662.5 450 76.4
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 1.2e-186 656.8 453 74.4
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.2e-183 646.0 453 73.3
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 6.4e-183 644.4 452 74.1
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 4.1e-182 641.7 455 72.7
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 7.1e-182 641.0 460 71.3
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 2.1e-181 639.4 454 71.1
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.9e-180 635.2 452 72.6
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 3.9e-180 635.2 452 72.6
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 5.1e-180 634.8 452 75.4
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.1e-179 633.6 451 72.3
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 2.5e-179 632.5 453 72.0
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 3.3e-179 632.1 460 70.9
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 7.3e-179 630.9 454 71.1
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 3.1e-177 625.5 452 71.7
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 6.9e-177 624.4 453 71.1
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 2.6e-176 622.5 466 68.7
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 2.6e-176 622.5 455 70.8
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 2.9e-175 619.0 454 70.5
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.4e-174 616.7 454 69.4
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 3.5e-173 612.1 455 70.8
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 5.1e-172 608.2 454 68.7
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 8.7e-172 607.4 454 68.5
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 1.9e-171 606.3 456 67.3
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 2.5e-171 605.9 444 70.7
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.5e-171 605.9 455 68.8
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 1.6e-170 603.2 454 68.3
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 2.1e-170 602.8 454 68.3
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 2.8e-170 602.4 457 68.7
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 3.6e-170 602.1 342 88.9
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 3.6e-170 602.1 454 68.7
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 4.8e-170 601.7 453 68.7
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.8e-170 601.7 455 68.6
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 6.2e-170 601.3 471 67.5
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 8.1e-170 600.9 453 68.2
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 3.1e-169 599.0 488 65.6
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 4.0e-169 598.6 453 68.7
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 5.3e-169 598.2 459 68.4
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 9.0e-169 597.4 455 68.4
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.2e-168 597.0 453 68.4
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 1.5e-168 596.7 461 67.7
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.6e-168 594.3 455 68.4
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.7e-167 593.2 455 68.4
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 4.9e-167 591.7 453 68.9
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.1e-166 590.5 472 66.9
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 1.9e-166 589.7 453 67.8
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.4e-166 589.3 452 68.1
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 5.4e-166 588.2 465 68.0
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 9.3e-166 587.4 454 65.6
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 9.3e-166 587.4 468 66.2
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 1.0e-164 583.9 453 67.1
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 3.9e-164 582.0 456 67.5
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 6.7e-164 581.3 451 67.8
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 8.7e-164 580.9 454 67.4
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 2.5e-163 579.3 452 66.8
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 2.8e-162 575.9 453 65.6
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.8e-162 575.9 454 65.6
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.7e-162 575.5 457 67.4
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 6.2e-162 574.7 453 65.1
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 8.1e-162 574.3 442 67.9
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.8e-161 573.2 455 66.6
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.8e-161 573.2 452 65.5
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 2.4e-161 572.8 453 67.3
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 4.0e-161 572.0 451 66.7
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 6.9e-161 571.2 452 65.3
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.5e-160 570.1 451 66.5
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 2.6e-160 569.3 454 66.7
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.6e-160 569.3 452 65.5
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 7.6e-160 567.8 434 68.0
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 7.6e-160 567.8 452 65.5
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.7e-159 566.6 533 57.0
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 2.9e-159 565.8 455 65.5
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 3.2e-158 562.4 453 66.2
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 3.2e-158 562.4 435 66.9
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 7.1e-158 561.2 453 64.7
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 2.1e-157 559.7 488 62.5
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 7.9e-157 557.8 454 66.1
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.0e-156 557.4 449 63.9
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.3e-156 557.0 449 63.9
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 2.3e-156 556.2 453 65.1
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 3.0e-156 555.8 454 62.6
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.3e-154 550.4 455 62.6
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.8e-153 546.6 452 63.7
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.0e-153 545.4 452 63.5
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 3.4e-152 542.3 415 67.0
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.7e-151 540.0 456 63.8
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.2e-151 539.7 453 62.7
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.1e-150 537.3 457 64.3
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 3.5e-149 532.3 521 54.9
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 3.5e-149 532.3 457 63.7
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 2.5e-147 526.2 427 66.5
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.7e-143 513.5 443 63.0
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.7e-143 513.5 442 61.5
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.8e-140 503.4 465 58.9
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 2.3e-140 503.1 420 63.6
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 8.8e-140 501.1 454 61.0
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.4e-137 493.8 447 58.8
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 4.5e-136 488.8 458 57.9
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.3e-135 487.3 434 59.0
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 1.4e-134 483.8 419 60.9
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 7.2e-134 481.5 462 59.1
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.8e-132 476.9 441 60.3
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 9.1e-129 464.5 415 62.4
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.7e-119 433.7 293 75.4
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 8.5e-119 431.4 437 54.0
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 8.0e-117 424.9 514 51.4
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.4e-116 424.1 378 59.5
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.4e-113 414.1 316 67.4
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 5.7e-107 392.1 450 50.9
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 9.8e-107 391.3 463 49.5
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.7e-106 390.6 457 48.8
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 3.0e-100 369.8 466 46.8
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.2e-100 369.0 254 73.2
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.9e-89 334.0 324 59.0
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.0e-88 330.5 319 58.6
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 4.6e-88 329.3 197 85.8
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 4.6e-80 302.8 197 77.7
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.2e-77 294.7 457 42.0
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 3.5e-72 276.6 217 64.5
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.1e-70 271.6 284 54.2
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 2.4e-68 263.8 311 48.6
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 4.9e-66 256.1 197 64.0
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.7e-64 250.4 528 36.2
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.0e-63 248.4 192 64.6
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 7.3e-62 242.3 187 64.7
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 7.3e-62 242.3 151 79.5
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 2.4e-60 237.3 236 57.2
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 4.2e-57 226.5 119 94.1
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.6e-56 224.6 255 51.0
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 6.4e-50 202.6 282 45.0
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 1.5e-46 191.4 220 49.5
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 4.0e-44 183.3 175 53.1
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 9.9e-43 178.7 133 71.4
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.3e-42 178.3 139 64.7
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 4.9e-42 176.4 322 37.0
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 1.3e-37 161.8 299 35.5
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 1.2e-35 155.2 295 34.9
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.2e-32 145.2 160 52.5
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.3e-31 141.0 163 43.6
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.6e-27 127.5 79 84.8
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.9e-26 124.0 87 66.7
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 3.2e-25 120.6 77 85.7
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 3.0e-23 114.0 79 68.4
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 8.8e-23 112.5 115 57.4
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 2.0e-19 101.3 157 45.2
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 3.4e-19 100.5 117 53.8
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 1.9e-17 94.7 131 45.8
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.1e-12 79.0 53 75.5
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 5.9e-11 73.2 51 70.6
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 3.8e-10 70.5 55 70.9
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 6.5e-10 69.7 53 69.8
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 5.5e-09 66.6 76 51.3
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.2e-08 65.5 46 73.9
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 1.0e-07 62.4 73 47.9
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.8e-07 61.6 63 50.8
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 1.5e-06 58.5 36 69.4


User provided reference genes

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