Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 2.7e-219 765.0 380 100.0
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 2.7e-219 765.0 380 100.0
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.4e-218 762.7 380 99.7
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 1.4e-215 752.7 380 98.2
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 1.4e-215 752.7 380 98.2
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 8.8e-210 733.4 382 96.9
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 7.0e-199 697.2 384 90.1
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.8e-194 682.6 387 87.9
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 4.1e-191 671.4 380 87.4
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 7.7e-190 667.2 380 86.8
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 1.2e-187 659.8 387 84.8
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.6e-187 659.4 384 85.9
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.8e-187 658.7 384 84.9
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 7.8e-182 640.6 372 85.5
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.7e-176 621.7 385 79.5
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 6.6e-173 610.9 320 90.0
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.3e-172 608.6 386 78.2
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.6e-171 606.3 325 89.5
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 2.0e-169 599.4 384 76.8
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 6.4e-168 594.3 381 76.4
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 2.4e-167 592.4 381 76.1
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 5.4e-167 591.3 381 76.1
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.5e-164 583.2 381 76.9
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 3.3e-164 582.0 382 74.9
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 2.1e-163 579.3 382 74.9
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.8e-162 576.2 322 85.1
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.2e-160 569.3 378 73.5
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 8.3e-160 567.4 379 72.8
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.4e-159 566.6 378 73.3
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 2.4e-159 565.8 383 77.0
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 2.1e-158 562.8 379 73.1
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 3.0e-157 558.9 376 72.6
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 5.1e-157 558.1 382 72.5
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 6.6e-157 557.8 374 74.3
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.6e-155 553.1 376 72.6
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.6e-155 553.1 378 72.8
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 3.6e-155 552.0 376 71.8
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 6.2e-155 551.2 378 73.0
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.1e-154 550.4 384 72.7
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.1e-154 550.4 385 71.2
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.4e-154 550.1 382 72.5
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 1.4e-154 550.1 376 72.6
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 3.1e-154 548.9 324 80.6
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.1e-154 548.9 381 70.6
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 4.0e-154 548.5 375 72.3
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 8.9e-154 547.4 386 72.0
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 1.2e-153 547.0 404 68.3
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 1.5e-153 546.6 377 71.4
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 2.6e-153 545.8 384 71.6
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.4e-153 545.0 384 71.6
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 5.8e-153 544.7 331 77.9
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 1.3e-152 543.5 374 72.2
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.7e-152 543.1 384 71.1
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.2e-152 542.7 312 80.4
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 2.9e-152 542.3 325 79.1
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.9e-152 542.3 385 71.4
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 2.9e-152 542.3 379 72.3
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 4.9e-152 541.6 380 70.0
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 6.4e-152 541.2 381 70.9
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 8.4e-152 540.8 384 71.1
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.4e-151 540.0 351 74.1
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.9e-151 539.7 380 71.6
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 2.4e-151 539.3 379 70.7
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 2.4e-151 539.3 376 71.8
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 3.2e-151 538.9 322 80.7
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 3.2e-151 538.9 381 70.9
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.1e-151 538.5 380 70.5
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 4.1e-151 538.5 376 71.5
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 5.4e-151 538.1 377 69.5
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 7.1e-151 537.7 398 69.1
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 9.2e-151 537.3 318 81.1
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 1.2e-150 537.0 378 72.0
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.2e-150 537.0 324 78.7
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 2.1e-150 536.2 378 71.2
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 3.5e-150 535.4 336 81.2
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 4.6e-150 535.0 353 72.8
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 6.0e-150 534.6 317 79.5
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 7.8e-150 534.3 398 68.8
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 1.0e-149 533.9 385 69.9
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 1.3e-149 533.5 385 69.6
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.7e-149 533.1 318 76.7
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.7e-149 533.1 374 71.1
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 2.3e-149 532.7 378 69.3
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 3.0e-149 532.3 381 69.8
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 3.9e-149 531.9 379 69.7
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 8.7e-149 530.8 377 68.7
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.1e-148 530.4 379 70.4
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.5e-148 530.0 322 79.2
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.9e-148 529.6 310 80.3
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 2.5e-148 529.3 317 77.0
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 2.5e-148 529.3 385 68.1
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 4.3e-148 528.5 378 70.4
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 4.3e-148 528.5 336 81.0
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 7.3e-148 527.7 378 68.8
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 7.3e-148 527.7 322 75.2
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.2e-147 526.9 380 70.0
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.6e-147 526.6 376 70.5
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 3.6e-147 525.4 371 71.2
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 4.7e-147 525.0 344 71.5
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 6.2e-147 524.6 394 67.5
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 5.8e-145 518.1 378 68.3
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 5.8e-145 518.1 377 69.5
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 7.6e-145 517.7 388 66.5
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.2e-144 516.2 383 67.6
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.1e-143 513.8 326 73.3
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.4e-143 513.5 383 67.1
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 2.4e-143 512.7 329 74.5
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.4e-143 512.7 410 63.9
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.6e-142 510.0 324 74.1
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 2.1e-142 509.6 330 72.1
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 4.3e-140 501.9 305 75.1
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 2.4e-138 496.1 325 72.9
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 1.5e-137 493.4 380 65.3
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 3.4e-137 492.3 301 73.8
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 9.9e-137 490.7 378 65.9
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 1.7e-136 490.0 352 71.0
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 4.9e-136 488.4 343 71.1
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 7.1e-135 484.6 348 66.4
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 2.3e-133 479.6 384 64.8
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 3.9e-133 478.8 348 70.4
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 1.9e-132 476.5 377 65.8
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 7.4e-132 474.6 377 65.3
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 2.8e-131 472.6 374 64.2
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 3.8e-128 462.2 348 69.3
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.2e-126 457.2 324 71.9
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 3.5e-126 455.7 353 62.6
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 5.1e-125 451.8 293 71.0
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 4.3e-124 448.7 327 70.9
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 2.2e-120 436.4 350 65.7
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 4.9e-120 435.3 294 66.3
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 7.1e-119 431.4 242 83.1
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 2.4e-114 416.4 332 59.0
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 3.8e-112 409.1 325 59.4
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 4.6e-110 402.1 318 60.4
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.8e-109 400.2 281 69.8
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 4.5e-105 385.6 326 65.0
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 4.5e-105 385.6 302 58.9
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 2.2e-104 383.3 247 76.1
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 8.8e-101 371.3 312 61.5
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 4.1e-98 362.5 261 69.7
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 7.0e-98 361.7 303 56.4
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 9.1e-98 361.3 305 58.7
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.5e-95 353.2 396 53.5
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 4.1e-90 335.9 304 57.9
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.0e-89 333.6 231 67.1
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 8.5e-88 328.2 202 75.7
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 9.4e-87 324.7 235 71.5
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 9.4e-87 324.7 200 75.0
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 4.7e-78 295.8 219 69.9
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 2.4e-74 283.5 223 68.2
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.9e-71 273.9 356 43.8
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 3.7e-67 259.6 297 46.5
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 7.8e-65 251.9 300 44.0
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 6.1e-62 242.3 312 43.3
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.4e-50 204.5 153 67.3
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 5.1e-48 196.1 115 77.4
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 8.9e-45 185.3 318 37.4
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 5.1e-40 169.5 184 57.6
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 2.8e-38 163.7 132 65.2
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 3.6e-38 163.3 95 83.2
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 2.4e-37 160.6 91 84.6
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 3.1e-37 160.2 132 64.4
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 2.6e-36 157.1 91 82.4
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 2.6e-36 157.1 132 62.9
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 3.8e-35 153.3 94 79.8
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 7.3e-31 139.0 102 69.6
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 9.3e-26 122.1 66 83.3
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.0e-24 118.6 91 69.2
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 2.3e-24 117.5 134 53.7
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 6.6e-24 115.9 78 66.7
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 1.6e-22 111.3 69 69.6
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 2.8e-22 110.5 62 79.0
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 3.6e-22 110.2 400 26.8
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 6.9e-21 105.9 119 52.1
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 6.4e-19 99.4 67 67.2
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.6e-17 94.7 51 88.2
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 6.7e-16 89.4 251 29.5
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 4.5e-12 76.6 41 85.4
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.0e-11 75.5 44 77.3
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.0e-11 75.5 44 77.3
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 3.8e-11 73.6 68 55.9
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 6.5e-11 72.8 47 72.3
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 6.0e-09 66.2 102 46.1
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 1.5e-07 61.6 33 87.9


User provided reference genes

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