Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p29990 Brassica napus HOM05D007547 ORTHO05D009590 2.3e-31 138.3 70 100.0
BcaC08g45367 Brassica carinata HOM05D007547 ORTHO05D009590 1.1e-30 136.0 68 100.0
BolC6t38159H Brassica oleracea HOM05D007547 ORTHO05D009590 2.5e-30 134.8 68 98.5
A07p27220 Brassica napus HOM05D007547 ORTHO05D009590 5.7e-30 133.7 68 98.5
BraA07t30366Z Brassica rapa HOM05D007547 ORTHO05D009590 5.7e-30 133.7 68 98.5
Sp5g34290 Schrenkiella parvula HOM05D007547 ORTHO05D009590 2.4e-28 128.3 68 95.6
CARHR072880 Cardamine hirsuta HOM05D007547 ORTHO05D009590 2.0e-27 125.2 68 92.6
AL4G11130 Arabidopsis lyrata HOM05D007547 ORTHO05D009590 3.4e-27 124.4 68 91.2
Carub.0004s0086 Capsella rubella HOM05D007547 ORTHO05D009590 3.4e-27 124.4 68 91.2
AT2G21820 Arabidopsis thaliana HOM05D007547 ORTHO05D009590 1.0e-26 122.9 68 91.2
Thhalv10019600m.g Eutrema salsugineum HOM05D007547 ORTHO05D009590 1.0e-26 122.9 68 89.7
BraA07t31944Z Brassica rapa HOM05D007547 ORTHO05D009590 3.8e-26 120.9 68 86.8
BcaC08g47491 Brassica carinata HOM05D007547 ORTHO05D009590 1.1e-25 119.4 68 85.3
C06p53150 Brassica napus HOM05D007547 ORTHO05D009590 1.1e-25 119.4 68 85.3
BolC6t40331H Brassica oleracea HOM05D007547 ORTHO05D009590 1.1e-25 119.4 68 85.3
Aa31LG4G1780 Aethionema arabicum HOM05D007547 ORTHO05D009590 1.9e-25 118.6 68 88.2
THA.LOC104808152 Tarenaya hassleriana HOM05D007547 ORTHO05D009590 9.7e-22 106.3 67 80.6
Migut.M01490 Erythranthe guttata HOM05D007547 ORTHO05D009590 1.7e-21 105.5 63 81.0
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 2.2e-21 105.1 68 75.0
Aqoxy1G00763 Aquilegia oxysepala HOM05D007547 ORTHO05D009590 8.2e-21 103.2 67 77.6
CSS0011642 Camellia sinensis var. sinensis HOM05D007547 ORTHO05D009590 8.2e-21 103.2 65 80.0
Phvul.005G044200 Phaseolus vulgaris HOM05D007547 ORTHO05D009590 1.1e-20 102.8 66 75.8
Psat1g131000 Pisum sativum HOM05D007547 ORTHO05D009590 1.1e-20 102.8 66 75.8
Ca_03316_v3 Cicer arietinum L. HOM05D007547 ORTHO05D009590 1.4e-20 102.4 66 75.8
CANSAT56G0291 Cannabis sativa HOM05D007547 ORTHO05D009590 1.8e-20 102.1 66 72.7
CsaV3_4G026690 Cucumis sativus L. HOM05D007547 ORTHO05D009590 1.8e-20 102.1 63 79.4
Lj3g0009805 Lotus japonicus HOM05D007547 ORTHO05D009590 1.8e-20 102.1 66 77.3
ClCG04G006620 Citrullus lanatus HOM05D007547 ORTHO05D009590 2.4e-20 101.7 63 79.4
Medtr2g062800 Medicago truncatula HOM05D007547 ORTHO05D009590 2.4e-20 101.7 66 75.8
SalBow8G1259 Salvia bowleyana HOM05D007547 ORTHO05D009590 3.1e-20 101.3 68 77.9
QL04p096133 Quercus lobata HOM05D007547 ORTHO05D009590 4.1e-20 100.9 66 74.2
QL04p096330 Quercus lobata HOM05D007547 ORTHO05D009590 4.1e-20 100.9 66 74.2
QL04p096363 Quercus lobata HOM05D007547 ORTHO05D009590 4.1e-20 100.9 66 74.2
MELO3C026033.2 Cucumis melo HOM05D007547 ORTHO05D009590 5.3e-20 100.5 63 77.8
TPR.G3626 Trifolium pratense HOM05D007547 ORTHO05D009590 5.3e-20 100.5 66 74.2
MD05G1241500 Malus domestica HOM05D007547 ORTHO05D009590 6.9e-20 100.1 67 70.1
Potri.010G176200 Populus trichocarpa HOM05D007547 ORTHO05D009590 9.1e-20 99.8 67 74.6
TAR624G0069 Trochodendron aralioides HOM05D007547 ORTHO05D009590 9.1e-20 99.8 63 79.4
Sed0025991 Sechium edule HOM05D007547 ORTHO05D009590 1.2e-19 99.4 63 76.2
TWI59G1298 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 2.0e-19 98.6 66 77.3
Glyma.08G160800 Glycine max HOM05D007547 ORTHO05D009590 2.6e-19 98.2 66 74.2
DCAR_013700 Daucus carota HOM05D007547 ORTHO05D009590 3.4e-19 97.8 62 74.2
Lalb_Chr25g0284091 Lupinus albus HOM05D007547 ORTHO05D009590 3.4e-19 97.8 66 74.2
Nn1g09847 Nelumbo nucifera HOM05D007547 ORTHO05D009590 3.4e-19 97.8 63 76.2
Manes.11G079000 Manihot esculenta HOM05D007547 ORTHO05D009590 4.5e-19 97.4 67 70.1
Haze_18453 Corylus avellana HOM05D007547 ORTHO05D009147 5.0e-18 94.0 67 73.1
CDE06G1569 Ceratophyllum demersum HOM05D000146 ORTHO05D000178 8.5e-18 93.2 68 67.6
Cpa.g.sc118.6 Carica papaya HOM05D007547 ORTHO05D009590 3.2e-17 91.3 67 70.1
FAN11G3189 Fragaria x ananassa HOM05D007547 ORTHO05D009590 3.2e-17 91.3 63 68.3
PSO541G4573 Papaver somniferum HOM05D007547 ORTHO05D009590 3.2e-17 91.3 76 69.7
Nitab4.5_0003384g0040 Nicotiana tabacum HOM05D007547 ORTHO05D009590 4.2e-17 90.9 67 71.6
RcHm_v2.0_Chr5g0022881 Rosa chinensis HOM05D007547 ORTHO05D009590 4.2e-17 90.9 63 68.3
FAN16G2958 Fragaria x ananassa HOM05D007547 ORTHO05D009590 7.2e-17 90.1 66 65.2
unitig_26.g10053 Utricularia gibba HOM05D007547 ORTHO05D009590 7.2e-17 90.1 67 70.1
HPP92_021471 Vanilla planifolia HOM05D007547 ORTHO05D009590 1.2e-16 89.4 69 66.7
Thecc.10G021200 Theobroma cacao HOM05D007547 ORTHO05D009590 2.1e-16 88.6 69 63.8
Eucgr.F04485 Eucalyptus grandis HOM05D007547 ORTHO05D009590 2.7e-16 88.2 77 62.3
Lalb_Chr25g0284071 Lupinus albus HOM05D007547 ORTHO05D009590 3.6e-16 87.8 69 68.1
Nitab4.5_0009717g0010 Nicotiana tabacum HOM05D007547 ORTHO05D009590 3.6e-16 87.8 68 69.1
Peaxi162Scf00479g00092 Petunia axillaris HOM05D007547 ORTHO05D009590 3.6e-16 87.8 67 68.7
BcaB02g07207 Brassica carinata HOM05D007547 ORTHO05D009590 4.7e-16 87.4 68 69.1
PGSC0003DMG400018766 Solanum tuberosum HOM05D007547 ORTHO05D009590 1.0e-15 86.3 67 67.2
Ah.11g039500 Amaranthus hybridus HOM05D007547 ORTHO05D009590 2.3e-15 85.1 65 67.7
Gohir.D05G303200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.3e-15 85.1 68 63.2
Gorai.009G322400 Gossypium raimondii HOM05D007547 ORTHO05D009590 2.3e-15 85.1 68 63.2
Gorai.008G081200 Gossypium raimondii HOM05D007547 ORTHO05D009590 3.0e-15 84.7 68 61.8
COL.COLO4_25679 Corchorus olitorius HOM05D007547 ORTHO05D009590 3.9e-15 84.3 67 62.7
CAN.G497.31 Capsicum annuum HOM05D007547 ORTHO05D009590 5.2e-15 84.0 70 64.3
Nitab4.5_0001982g0020 Nicotiana tabacum HOM05D007547 ORTHO05D009590 5.2e-15 84.0 68 64.7
Solyc03g046380.1 Solanum lycopersicum HOM05D007547 ORTHO05D009590 1.1e-14 82.8 64 67.2
Gohir.A06G138100 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.5e-14 82.4 68 58.8
Sc15g0005120 Simmondsia chinensis HOM05D007547 ORTHO05D009590 1.5e-14 82.4 70 67.1
Gohir.A05G237600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.0e-14 82.0 68 58.8
Gohir.A07G180700 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.0e-14 82.0 68 58.8
Gohir.A11G192300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.0e-14 82.0 68 58.8
Gohir.D03G067200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.0e-14 82.0 68 58.8
Sopen03g010530 Solanum pennellii HOM05D007547 ORTHO05D009590 2.6e-14 81.6 64 65.6
TWI38G1141 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 2.6e-14 81.6 65 66.2
TWI38G2170 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 2.6e-14 81.6 65 66.2
CDE02G1937 Ceratophyllum demersum HOM05D007547 ORTHO05D009590 4.4e-14 80.9 68 66.2
Gohir.A02G145400 Gossypium hirsutum HOM05D007547 ORTHO05D009590 4.4e-14 80.9 68 57.4
Atru.chr1.6 Acer truncatum HOM05D007547 ORTHO05D009590 5.7e-14 80.5 69 62.3
EL10Ac1g02249 Beta vulgaris HOM05D007547 ORTHO05D009590 5.7e-14 80.5 67 65.7
Gohir.D11G227600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 5.7e-14 80.5 67 58.2
Gohir.A05G304300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 7.4e-14 80.1 68 60.3
Gohir.D03G007300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 9.7e-14 79.7 68 57.4
GSVIVG01036687001 Vitis vinifera HOM05D007547 ORTHO05D009590 1.7e-13 79.0 49 79.6
PGR031G1160 Punica granatum HOM05D007547 ORTHO05D009590 4.8e-13 77.4 67 59.7
ECA234G4113 Erigeron canadensis HOM05D007547 ORTHO05D009590 1.4e-12 75.9 78 55.1
AUR62035430 Chenopodium quinoa HOM05D007547 ORTHO05D009590 2.4e-12 75.1 67 62.7
Lsat_1_v5_gn_5_102841 Lactuca sativa HOM05D007547 ORTHO05D009590 2.4e-12 75.1 78 53.8
AUR62035713 Chenopodium quinoa HOM05D007547 ORTHO05D009590 4.1e-12 74.3 67 61.2
AL2G39720 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 5.3e-12 73.9 47 80.9
Rhsim04G0026600 Rhododendron simsii HOM05D007547 ORTHO05D009590 2.0e-11 72.0 71 60.6
Peaxi162Scf00020g01922 Petunia axillaris HOM05D007547 ORTHO05D009590 7.7e-11 70.1 55 67.3
Ciclev10007105m.g Citrus clementina HOM05D007547 ORTHO05D009590 2.9e-10 68.2 78 53.8
Os08g0385000 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 3.2e-09 64.7 49 63.3
Zm00001eb055260 Zea mays HOM05D007547 ORTHO05D009590 4.7e-08 60.8 49 61.2
Os01g0654400 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 1.2e-06 56.2 45 57.8
Duzib114G0968 Durio zibethinus HOM05D000021 ORTHO05D000010 1.5e-06 55.8 47 61.7


User provided reference genes

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