Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1558.9 777 100.0
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1547.3 777 99.0
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1543.5 777 99.1
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1533.5 777 97.8
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1525.8 777 97.6
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1496.5 777 95.9
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1453.7 777 93.1
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1453.3 777 92.5
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1448.3 777 92.3
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1432.9 777 91.1
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1422.9 777 90.5
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1412.1 777 89.7
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1402.5 777 89.6
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1397.5 777 88.7
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1390.6 785 88.3
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1354.3 785 86.4
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1350.1 780 86.5
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1349.3 783 86.6
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1337.8 775 84.9
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1336.6 788 85.7
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1215.3 786 77.4
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1202.2 775 75.7
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1199.9 765 76.6
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1197.6 765 76.3
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1196.0 773 74.5
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1195.6 765 76.3
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1192.2 775 74.3
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1191.8 773 74.6
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1182.5 773 73.9
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1179.9 808 71.5
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1177.5 774 73.6
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1176.8 812 71.3
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1169.1 773 73.7
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1168.3 773 72.7
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1166.4 773 72.7
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1162.9 774 71.8
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1161.0 775 73.7
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1159.4 775 72.3
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1153.7 813 69.5
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1152.5 773 72.4
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1152.1 775 72.0
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1151.3 778 72.5
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1146.3 780 71.8
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1145.2 773 72.2
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1141.7 774 71.6
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1141.3 773 72.3
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1140.6 775 71.6
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1138.6 775 71.4
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1137.1 758 72.8
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1137.1 777 70.5
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1136.3 773 71.7
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1135.9 774 71.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1135.2 775 70.7
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1134.4 773 70.9
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1133.6 773 71.3
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 776 70.5
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 775 70.7
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1130.5 773 71.8
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1129.4 774 71.3
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1129.0 775 71.4
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1123.2 776 69.8
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1122.8 773 71.8
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1120.5 750 71.6
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1119.8 775 70.3
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1118.2 774 69.9
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1115.1 776 69.6
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1114.4 759 71.3
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1111.7 758 71.4
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1110.5 774 69.8
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1109.4 774 70.5
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1108.6 773 69.5
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1107.4 761 71.2
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1105.5 775 69.4
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1103.2 772 69.2
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1099.0 773 69.2
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1097.8 773 70.2
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1092.0 776 69.2
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1089.3 773 69.1
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1087.8 764 68.8
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1087.8 886 62.4
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1085.1 772 68.3
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1084.3 772 68.5
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 1.2e-309 1066.2 773 67.8
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 4.4e-309 1064.3 785 66.9
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 1.6e-306 1055.8 775 66.6
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.7e-305 1052.4 752 67.3
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 2.4e-299 1031.9 780 65.6
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 3.0e-297 1025.0 678 72.9
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 1.1e-294 1016.5 697 70.7
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 2.6e-293 1011.9 789 65.1
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 3.8e-292 1008.1 759 66.3
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 6.7e-289 997.3 779 65.3
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 5.6e-288 994.2 773 64.6
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 2.4e-286 988.8 667 72.1
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 5.3e-286 987.6 691 70.0
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 7.9e-282 973.8 734 67.0
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 2.5e-280 968.8 746 63.8
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 8.2e-279 963.8 743 64.7
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 1.0e-273 946.8 748 64.3
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.8e-273 946.0 770 61.6
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 2.0e-269 932.6 772 58.7
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 2.5e-267 925.6 765 60.7
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 9.7e-264 913.7 748 63.0
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 9.4e-251 870.5 633 67.9
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.1e-250 869.4 661 65.5
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 1.4e-249 866.7 704 61.5
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 2.2e-239 832.8 646 63.6
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 3.5e-237 825.5 643 63.8
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 1.1e-235 820.5 554 71.5
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 7.5e-232 807.7 561 68.6
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 3.0e-212 742.7 511 70.6
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 2.5e-211 739.6 770 52.2
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 1.5e-184 650.6 443 71.6
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 7.9e-173 611.7 446 67.0
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 1.1e-145 521.5 352 70.5
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 1.6e-141 507.7 372 68.3
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.0e-135 486.1 610 46.9
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 2.2e-114 417.5 274 73.0
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 4.9e-114 416.4 346 59.2
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 5.8e-99 366.3 249 70.3
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 5.4e-89 333.2 248 63.3
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.8e-76 291.6 358 46.9
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.4e-68 265.4 266 52.6
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 5.3e-68 263.5 260 58.1
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.0e-67 261.5 185 66.5
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 7.9e-64 249.6 231 55.0
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 3.0e-63 247.7 211 63.0
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 5.6e-62 243.4 252 51.6
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.2e-61 240.0 157 73.9
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.5e-58 229.9 139 78.4
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.8e-55 221.9 139 75.5
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-45 189.1 207 50.7
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 6.9e-44 183.3 149 59.7
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 9.4e-41 172.9 149 59.7
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 2.7e-40 171.4 119 68.1
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 6.1e-40 170.2 107 75.7
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.0e-39 169.5 107 76.6
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.4e-39 169.1 107 74.8
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 5.1e-39 167.2 107 73.8
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.8e-37 161.4 118 64.4
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.6e-35 154.8 91 76.9
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.3e-34 152.5 107 66.4
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.7e-34 152.1 84 84.5
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 7.9e-32 143.3 93 73.1
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 8.8e-31 139.8 96 66.7
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 1.7e-29 135.6 86 70.9
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 4.5e-27 127.5 95 64.2
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 5.9e-27 127.1 81 74.1
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.5e-26 123.6 91 68.1
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.5e-26 123.6 91 68.1
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.5e-25 122.5 91 67.0
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.9e-25 122.1 85 70.6
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-23 115.9 81 66.7
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.0e-22 112.1 124 49.2
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 7.0e-20 103.6 74 62.2
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 2.0e-19 102.1 170 40.0
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.7e-19 101.7 216 34.7
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 2.2e-18 98.6 165 38.2
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.9e-17 95.5 216 33.8
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 1.2e-14 86.3 77 55.8
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.7e-10 72.4 45 71.1
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 2.2e-10 72.0 37 75.7
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.2e-10 72.0 53 67.9
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 6.5e-10 70.5 59 59.3
BraA06t24594Z Brassica rapa HOM05D004228 ORTHO05D005137 4.2e-09 67.8 41 82.9
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 4.2e-09 67.8 93 44.1
AL8G21450 Arabidopsis lyrata HOM05D004228 ORTHO05D079388 1.2e-06 59.7 57 56.1
arahy.Tifrunner.gnm1.ann1.W3R70Z Arachis hypogaea HOM05D004228 ORTHO05D005137 3.4e-06 58.2 50 58.0
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 3.4e-06 58.2 44 61.4
ECA238G3407 Erigeron canadensis HOM05D003800 ORTHO05D004549 4.4e-06 57.8 144 32.6
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 4.4e-06 57.8 154 31.8
Zm00001eb288110 Zea mays HOM05D003800 ORTHO05D004549 4.4e-06 57.8 149 32.9
CDE02G3521 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 7.5e-06 57.0 154 31.2
Lsat_1_v5_gn_2_17540 Lactuca sativa HOM05D003800 ORTHO05D004549 7.5e-06 57.0 154 30.5
Lsat_1_v5_gn_8_2340 Lactuca sativa HOM05D003800 ORTHO05D004549 9.8e-06 56.6 154 31.2
MD00G1188100 Malus domestica HOM05D004228 ORTHO05D043558 9.8e-06 56.6 29 75.9


User provided reference genes

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