Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 6.4e-34 147.1 90 100.0
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 6.4e-34 147.1 90 100.0
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 6.4e-34 147.1 90 100.0
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 6.6e-31 137.1 90 95.6
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 6.6e-31 137.1 90 96.7
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 5.4e-25 117.5 63 88.9
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.3e-23 112.8 64 89.1
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 3.9e-23 111.3 63 87.3
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 3.9e-23 111.3 63 87.3
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 3.9e-23 111.3 63 87.3
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 3.9e-23 111.3 63 87.3
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 4.3e-22 107.8 85 72.9
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.2e-21 106.3 62 79.0
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.6e-21 105.9 63 84.1
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 2.8e-21 105.1 84 81.0
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.8e-21 105.1 82 85.4
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 4.0e-20 101.3 64 81.2
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 5.2e-20 100.9 90 76.7
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.5e-19 99.4 60 75.0
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 9.9e-19 96.7 62 75.8
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 9.9e-19 96.7 90 63.3
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.7e-18 95.9 91 78.0
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 6.4e-18 94.0 62 72.6
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 6.4e-18 94.0 63 76.2
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 6.4e-18 94.0 75 86.7
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.9e-17 92.4 56 75.0
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 1.6e-16 89.4 84 57.1
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 2.1e-16 89.0 61 63.9
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.0e-15 86.7 84 53.6
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.9e-15 84.7 86 53.5
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 5.1e-15 84.3 60 66.7
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 5.1e-15 84.3 60 66.7
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 8.7e-15 83.6 52 67.3
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 8.7e-15 83.6 60 63.3
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.5e-14 82.8 56 67.9
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 1.5e-14 82.8 86 45.3
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.9e-14 82.4 84 52.4
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.9e-14 82.4 82 52.4
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 2.5e-14 82.0 60 63.3
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 2.5e-14 82.0 63 60.3
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 2.5e-14 82.0 60 63.3
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 2.5e-14 82.0 60 61.7
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 3.3e-14 81.6 60 66.7
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 3.3e-14 81.6 82 52.4
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 4.3e-14 81.3 60 73.3
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 4.3e-14 81.3 64 59.4
BNapus_Darmor_BZH_scaffold_293p00030 Brassica napus HOM05D006125 ORTHO05D007404 5.6e-14 80.9 41 95.1
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 5.6e-14 80.9 58 69.0
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 5.6e-14 80.9 67 61.2
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 5.6e-14 80.9 57 63.2
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 7.3e-14 80.5 63 61.9
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 7.3e-14 80.5 52 69.2
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 1.2e-13 79.7 101 46.5
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 1.6e-13 79.3 43 76.7
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 2.1e-13 79.0 57 63.2
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 2.1e-13 79.0 58 69.0
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 2.8e-13 78.6 52 61.5
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 4.7e-13 77.8 46 71.7
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 4.7e-13 77.8 60 55.0
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 4.7e-13 77.8 82 48.8
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 4.7e-13 77.8 63 58.7
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 8.1e-13 77.0 45 80.0
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.1e-12 76.6 88 47.7
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 1.1e-12 76.6 39 84.6
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.4e-12 76.3 57 61.4
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 2.4e-12 75.5 68 52.9
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.1e-12 75.1 86 48.8
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 3.1e-12 75.1 53 62.3
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 3.1e-12 75.1 47 68.1
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 3.1e-12 75.1 52 59.6
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 3.1e-12 75.1 77 49.4
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 4.0e-12 74.7 45 68.9
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 4.0e-12 74.7 45 68.9
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 4.0e-12 74.7 49 63.3
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 5.3e-12 74.3 60 56.7
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 9.0e-12 73.6 59 54.2
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 9.0e-12 73.6 44 70.5
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 9.0e-12 73.6 61 55.7
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 1.2e-11 73.2 74 48.6
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 1.2e-11 73.2 53 60.4
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.0e-11 72.4 76 63.2
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 2.0e-11 72.4 82 45.1
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.0e-11 72.4 78 62.8
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 2.0e-11 72.4 60 55.0
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.6e-11 72.0 59 54.2
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.4e-11 71.6 60 46.7
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 4.4e-11 71.2 69 49.3
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 4.4e-11 71.2 60 58.3
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 5.8e-11 70.9 74 63.5
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 5.8e-11 70.9 78 60.3
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 9.9e-11 70.1 81 58.0
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 9.9e-11 70.1 86 44.2
BolC6t38413H Brassica oleracea HOM05D006125 ORTHO05D007404 1.3e-10 69.7 47 83.0
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 1.3e-10 69.7 58 50.0
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 1.3e-10 69.7 45 57.8
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.7e-10 69.3 63 47.6
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 2.2e-10 68.9 80 57.5
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 2.2e-10 68.9 64 50.0
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 2.2e-10 68.9 65 50.8
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 2.2e-10 68.9 56 55.4
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-10 68.9 63 49.2
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 2.9e-10 68.6 60 56.7
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 3.8e-10 68.2 58 51.7
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 4.9e-10 67.8 54 59.3
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 4.9e-10 67.8 68 63.2
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 4.9e-10 67.8 65 50.8
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 4.9e-10 67.8 63 54.0
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 6.4e-10 67.4 76 44.7
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.1e-09 66.6 87 43.7
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 1.4e-09 66.2 66 45.5
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.4e-09 66.2 56 58.9
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 1.4e-09 66.2 80 43.8
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 1.9e-09 65.9 45 55.6
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.9e-09 65.9 45 55.6
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 2.4e-09 65.5 60 46.7
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 3.2e-09 65.1 82 41.5
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 3.2e-09 65.1 57 61.4
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 3.2e-09 65.1 42 57.1
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 3.2e-09 65.1 35 74.3
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 4.2e-09 64.7 78 43.6
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 5.4e-09 64.3 60 48.3
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 5.4e-09 64.3 85 48.2
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 5.4e-09 64.3 45 53.3
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 1.2e-08 63.2 75 41.3
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 2.1e-08 62.4 49 67.3
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 3.5e-08 61.6 58 43.1
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 7.8e-08 60.5 53 52.8
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.0e-07 58.5 57 43.9


User provided reference genes

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