Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 1.6e-45 185.7 87 100.0
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 2.1e-42 175.3 87 96.6
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 1.4e-41 172.6 87 94.3
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 3.4e-40 167.9 80 96.2
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 9.2e-38 159.8 80 93.8
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 9.2e-38 159.8 80 93.8
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 9.2e-38 159.8 80 93.8
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 9.2e-38 159.8 80 93.8
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 9.2e-38 159.8 80 93.8
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 9.2e-38 159.8 80 93.8
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 1.6e-37 159.1 82 89.0
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.0e-37 158.7 80 92.5
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.7e-37 158.3 87 88.5
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 3.5e-37 157.9 82 87.8
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 3.5e-37 157.9 80 92.5
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 3.5e-37 157.9 80 92.5
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 3.5e-37 157.9 82 87.8
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 4.6e-37 157.5 81 88.9
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 4.6e-37 157.5 80 91.2
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 6.0e-37 157.1 82 87.8
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.0e-36 156.4 82 89.0
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.3e-36 156.0 75 94.7
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 5.0e-36 154.1 80 90.0
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 5.0e-36 154.1 73 95.9
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 5.0e-36 154.1 73 95.9
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 5.0e-36 154.1 73 95.9
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 5.0e-36 154.1 73 95.9
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 6.6e-36 153.7 81 86.4
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 6.6e-36 153.7 76 92.1
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 8.6e-36 153.3 82 86.6
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 1.1e-35 152.9 76 92.1
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 1.5e-35 152.5 83 85.5
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 2.5e-35 151.8 76 90.8
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 4.3e-35 151.0 76 89.5
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 4.3e-35 151.0 76 89.5
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 4.3e-35 151.0 80 87.5
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 7.3e-35 150.2 76 89.5
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 1.6e-34 149.1 82 82.9
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 1.6e-34 149.1 76 89.5
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 1.6e-34 149.1 76 89.5
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 2.1e-34 148.7 82 82.9
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 2.8e-34 148.3 82 81.7
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 3.6e-34 147.9 76 86.8
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 3.6e-34 147.9 79 88.6
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 4.7e-34 147.5 78 85.9
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 4.7e-34 147.5 80 87.5
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 4.7e-34 147.5 78 87.2
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 4.7e-34 147.5 78 83.3
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 6.2e-34 147.1 77 87.0
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 6.2e-34 147.1 86 81.4
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 6.2e-34 147.1 76 86.8
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 8.0e-34 146.7 83 80.7
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 8.0e-34 146.7 78 87.2
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 8.0e-34 146.7 74 90.5
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 8.0e-34 146.7 76 86.8
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.1e-33 146.4 82 84.1
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 1.8e-33 145.6 86 81.4
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-33 145.6 78 88.5
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-33 145.6 78 88.5
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.8e-33 145.6 78 88.5
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 1.8e-33 145.6 76 86.8
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 1.8e-33 145.6 74 87.8
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 2.3e-33 145.2 79 86.1
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 2.3e-33 145.2 87 78.2
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 3.1e-33 144.8 74 86.5
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 3.1e-33 144.8 73 87.7
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 3.1e-33 144.8 70 94.3
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 3.1e-33 144.8 70 94.3
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 3.1e-33 144.8 70 94.3
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 3.1e-33 144.8 70 94.3
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 3.1e-33 144.8 78 84.6
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 3.1e-33 144.8 85 80.0
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 4.0e-33 144.4 86 80.2
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 5.2e-33 144.1 82 84.1
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 5.2e-33 144.1 78 85.9
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 5.2e-33 144.1 70 92.9
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 8.9e-33 143.3 77 85.7
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.2e-32 142.9 77 84.4
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 1.2e-32 142.9 74 86.5
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.2e-32 142.9 76 86.8
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 1.2e-32 142.9 73 87.7
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 1.5e-32 142.5 83 80.7
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.5e-32 142.5 74 86.5
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.5e-32 142.5 74 86.5
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.5e-32 142.5 74 86.5
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 1.5e-32 142.5 70 92.9
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 1.5e-32 142.5 79 79.7
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 2.0e-32 142.1 87 77.0
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 2.0e-32 142.1 74 85.1
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 2.0e-32 142.1 74 85.1
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 2.0e-32 142.1 74 85.1
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 2.6e-32 141.7 74 86.5
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 2.6e-32 141.7 74 86.5
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 2.6e-32 141.7 74 86.5
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 2.6e-32 141.7 74 86.5
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 2.6e-32 141.7 71 90.1
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 3.4e-32 141.4 82 80.5
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 3.4e-32 141.4 78 83.3
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 3.4e-32 141.4 78 83.3
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 3.4e-32 141.4 70 91.4
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 5.8e-32 140.6 82 76.8
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 5.8e-32 140.6 74 83.8
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.8e-32 140.6 74 85.1
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.8e-32 140.6 74 85.1
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 5.8e-32 140.6 74 85.1
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 5.8e-32 140.6 74 85.1
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 9.8e-32 139.8 78 80.8
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 1.3e-31 139.4 79 79.7
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.3e-31 139.4 69 89.9
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.7e-31 139.0 87 73.6
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.9e-31 138.3 78 79.5
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 2.9e-31 138.3 74 83.8
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 3.7e-31 137.9 74 82.4
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 6.4e-31 137.1 74 82.4
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 8.3e-31 136.7 74 82.4
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.1e-30 136.3 74 82.4
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 1.9e-30 135.6 100 68.0
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 4.1e-30 134.4 65 90.8
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 5.4e-30 134.0 95 68.4
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 3.5e-29 131.3 63 92.1
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.0e-28 129.8 61 93.4
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 1.3e-28 129.4 62 91.9
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 1.3e-28 129.4 62 91.9
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 3.9e-28 127.9 60 93.3
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 3.9e-28 127.9 74 82.4
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 5.1e-28 127.5 61 91.8
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 8.6e-28 126.7 57 96.5
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 5.6e-27 124.0 96 63.5
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 4.7e-26 120.9 70 74.3
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 2.6e-24 115.2 50 98.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 3.7e-23 111.3 50 96.0
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 4.9e-23 110.9 63 81.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 1.4e-22 109.4 50 92.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 5.4e-22 107.5 50 92.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 8.6e-20 100.1 49 85.7
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 4.3e-19 97.8 68 64.7
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 2.8e-18 95.1 64 62.5
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 2.8e-18 95.1 64 62.5
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 3.6e-18 94.7 74 59.5
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.1e-17 93.2 63 74.6
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 1.5e-16 89.4 64 60.9
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 1.1e-11 73.2 65 49.2
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 2.2e-07 58.9 29 86.2


User provided reference genes

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