Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 9.5e-43 176.4 87 100.0
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 2.8e-42 174.9 87 98.9
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 8.6e-20 100.1 64 76.6
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 4.3e-19 97.8 66 75.8
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 4.3e-19 97.8 66 75.8
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 4.7e-18 94.4 66 71.2
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 4.7e-18 94.4 66 71.2
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 8.1e-18 93.6 66 72.7
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 1.1e-17 93.2 67 74.6
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 4.0e-17 91.3 66 69.7
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 5.2e-17 90.9 65 70.8
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 8.9e-17 90.1 65 70.8
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 2.0e-16 89.0 67 71.6
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 3.2e-14 81.6 86 57.0
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 1.4e-09 66.2 62 58.1
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.1e-09 65.1 81 49.4
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 4.0e-09 64.7 60 63.3
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 5.3e-09 64.3 51 64.7
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 4.4e-08 61.2 59 59.3
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 5.8e-08 60.8 59 55.9
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 5.8e-08 60.8 59 57.6
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.3e-07 59.7 57 52.6
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 3.8e-07 58.2 62 54.8
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 3.8e-07 58.2 62 54.8
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 4.9e-07 57.8 52 59.6
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 4.9e-07 57.8 49 55.1
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 4.9e-07 57.8 52 59.6
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 6.4e-07 57.4 49 55.1
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 6.4e-07 57.4 56 55.4
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 8.4e-07 57.0 56 55.4
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 8.4e-07 57.0 62 53.2
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 8.4e-07 57.0 70 50.0
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 8.4e-07 57.0 77 46.8
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 8.4e-07 57.0 59 54.2
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 8.4e-07 57.0 52 59.6
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 8.4e-07 57.0 49 61.2
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.1e-06 56.6 52 57.7
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 1.4e-06 56.2 59 54.2
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.9e-06 55.8 49 57.1
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.9e-06 55.8 52 59.6
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.9e-06 55.8 62 50.0
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 1.9e-06 55.8 58 58.6
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 2.4e-06 55.5 49 57.1
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 4.2e-06 54.7 59 55.9
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 4.2e-06 54.7 51 54.9
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 5.4e-06 54.3 68 47.1
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 7.1e-06 53.9 71 49.3


User provided reference genes

Program Settings