Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p27360 Brassica napus HOM05D001304 ORTHO05D040989 6.9e-63 243.8 125 100.0
BolC6t37906H Brassica oleracea HOM05D001304 ORTHO05D040989 6.9e-63 243.8 125 100.0
BcaB03g15176 Brassica carinata HOM05D001304 ORTHO05D007800 1.6e-30 136.3 135 59.3
A07p34200 Brassica napus HOM05D001304 ORTHO05D007800 2.7e-30 135.6 135 59.3
BraA07t31049Z Brassica rapa HOM05D001304 ORTHO05D007800 2.7e-30 135.6 135 59.3
BcaC08g46186 Brassica carinata HOM05D001304 ORTHO05D007800 4.5e-30 134.8 128 61.7
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 4.5e-30 134.8 128 61.7
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 4.5e-30 134.8 128 61.7
C06p38530 Brassica napus HOM05D001304 ORTHO05D007800 1.5e-28 129.8 133 57.9
BolC6t38946H Brassica oleracea HOM05D001304 ORTHO05D007800 1.5e-28 129.8 133 57.9
Thhalv10018203m.g Eutrema salsugineum HOM05D001304 ORTHO05D007800 1.9e-28 129.4 133 57.9
BcaB03g15369 Brassica carinata HOM05D001304 ORTHO05D007800 2.5e-28 129.0 135 57.0
BraA07t30870Z Brassica rapa HOM05D001304 ORTHO05D007800 3.3e-28 128.6 86 76.7
A07p32460 Brassica napus HOM05D001304 ORTHO05D007800 5.6e-28 127.9 79 82.3
AT1G67690 Arabidopsis thaliana HOM05D001304 ORTHO05D007800 2.1e-27 125.9 133 56.4
CARHR060280 Cardamine hirsuta HOM05D001304 ORTHO05D007800 2.8e-27 125.6 126 58.7
Carub.0002s1412 Capsella rubella HOM05D001304 ORTHO05D007800 3.6e-27 125.2 133 56.4
Sp5g22680 Schrenkiella parvula HOM05D001304 ORTHO05D007800 3.0e-26 122.1 126 58.7
AL2G26390 Arabidopsis lyrata HOM05D001304 ORTHO05D007800 5.2e-26 121.3 133 55.6
Aa31LG11G12080 Aethionema arabicum HOM05D001304 ORTHO05D007800 7.0e-23 110.9 86 64.0
THA.LOC104825527 Tarenaya hassleriana HOM05D001304 ORTHO05D007800 2.3e-21 105.9 86 62.8
Gohir.D02G153600 Gossypium hirsutum HOM05D001304 ORTHO05D007800 5.2e-18 94.7 79 55.7
CANSAT21G0986 Cannabis sativa HOM05D001304 ORTHO05D007800 2.6e-17 92.4 128 41.4
Gohir.A03G129900 Gossypium hirsutum HOM05D001304 ORTHO05D007800 2.6e-17 92.4 79 55.7
FAN07G2070 Fragaria x ananassa HOM05D001304 ORTHO05D007800 3.4e-17 92.0 86 52.3
Nn4g22445 Nelumbo nucifera HOM05D001304 ORTHO05D007800 4.4e-17 91.7 79 50.6
QL03p055365 Quercus lobata HOM05D001304 ORTHO05D007800 4.4e-17 91.7 86 51.2
Gorai.005G172700 Gossypium raimondii HOM05D001304 ORTHO05D007800 7.5e-17 90.9 79 54.4
HanXRQChr12g0372151 Helianthus annuus HOM05D001304 ORTHO05D007800 7.5e-17 90.9 89 48.3
CiPaw.06G063200 Carya illinoinensis HOM05D001304 ORTHO05D007800 9.8e-17 90.5 86 48.8
Ciclev10033657m.g Citrus clementina HOM05D001304 ORTHO05D007800 1.3e-16 90.1 89 48.3
FvH4_4g24570 Fragaria vesca HOM05D001304 ORTHO05D007800 1.3e-16 90.1 86 50.0
FAN12G0304 Fragaria x ananassa HOM05D001304 ORTHO05D007800 1.3e-16 90.1 86 50.0
Lsat_1_v5_gn_8_151441 Lactuca sativa HOM05D001304 ORTHO05D007800 1.3e-16 90.1 96 44.8
RcHm_v2.0_Chr4g0431491 Rosa chinensis HOM05D001304 ORTHO05D007800 1.3e-16 90.1 86 50.0
Thecc.02G272500 Theobroma cacao HOM05D001304 ORTHO05D007800 1.7e-16 89.7 89 47.2
MBI11_g16648_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D007800 2.2e-16 89.4 79 50.6
unitig_747.g21137 Utricularia gibba HOM05D001304 ORTHO05D007800 2.2e-16 89.4 86 52.3
Atru.BG.281.p Acer truncatum HOM05D001304 ORTHO05D007800 3.7e-16 88.6 89 47.2
Atru.chr11.2222 Acer truncatum HOM05D001304 ORTHO05D007800 3.7e-16 88.6 89 47.2
CSS0031471 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D007800 3.7e-16 88.6 89 49.4
Ca_16492_v3 Cicer arietinum L. HOM05D001304 ORTHO05D007800 3.7e-16 88.6 79 50.6
ECA233G6138 Erigeron canadensis HOM05D001304 ORTHO05D007800 3.7e-16 88.6 96 43.8
Psat5g093160 Pisum sativum HOM05D001304 ORTHO05D007800 4.9e-16 88.2 79 50.6
Lalb_Chr11g0075661 Lupinus albus HOM05D001304 ORTHO05D007800 6.4e-16 87.8 79 51.9
Manes.12G016550 Manihot esculenta HOM05D001304 ORTHO05D007800 6.4e-16 87.8 89 46.1
Prupe.1G234500 Prunus persica HOM05D001304 ORTHO05D007800 6.4e-16 87.8 86 48.8
CSS0009053 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D007800 8.3e-16 87.4 93 48.4
Cfa009301 Carpinus fangiana HOM05D001304 ORTHO05D007800 8.3e-16 87.4 104 45.2
Haze_12334 Corylus avellana HOM05D001304 ORTHO05D007800 8.3e-16 87.4 104 45.2
Migut.K00684 Erythranthe guttata HOM05D001304 ORTHO05D007800 8.3e-16 87.4 79 54.4
TAR629G3532 Trochodendron aralioides HOM05D001304 ORTHO05D007800 1.1e-15 87.0 79 51.9
GSVIVG01010319001 Vitis vinifera HOM05D001304 ORTHO05D007800 1.1e-15 87.0 79 55.7
vmacro01093 Vaccinium macrocarpon HOM05D001304 ORTHO05D007800 1.4e-15 86.7 80 50.0
AUR62005559 Chenopodium quinoa HOM05D001304 ORTHO05D007800 1.9e-15 86.3 79 48.1
Potri.010G054466 Populus trichocarpa HOM05D001304 ORTHO05D007800 1.9e-15 86.3 89 47.2
AUR62024175 Chenopodium quinoa HOM05D001304 ORTHO05D007800 2.4e-15 85.9 79 49.4
FAN17G0228 Fragaria x ananassa HOM05D001304 ORTHO05D007800 2.4e-15 85.9 86 48.8
Rhsim12G0036000 Rhododendron simsii HOM05D001304 ORTHO05D007800 2.4e-15 85.9 70 54.3
TPR.G33396 Trifolium pratense HOM05D001304 ORTHO05D007800 2.4e-15 85.9 79 50.6
Aqoxy5G03558 Aquilegia oxysepala HOM05D001304 ORTHO05D007800 3.2e-15 85.5 79 49.4
arahy.Tifrunner.gnm1.ann1.D3J7CW Arachis hypogaea HOM05D001304 ORTHO05D007800 3.2e-15 85.5 79 50.6
arahy.Tifrunner.gnm1.ann1.J2BJ93 Arachis hypogaea HOM05D001304 ORTHO05D007800 3.2e-15 85.5 79 50.6
COL.COLO4_23601 Corchorus olitorius HOM05D001304 ORTHO05D007800 3.2e-15 85.5 104 44.2
Eucgr.B03454 Eucalyptus grandis HOM05D001304 ORTHO05D007800 3.2e-15 85.5 79 50.6
Medtr3g086000 Medicago truncatula HOM05D001304 ORTHO05D007800 3.2e-15 85.5 79 49.4
Ah.03g133760 Amaranthus hybridus HOM05D001304 ORTHO05D007800 4.1e-15 85.1 79 45.6
Lj6C820G6 Lonicera japonica HOM05D001304 ORTHO05D007800 4.1e-15 85.1 86 48.8
Sabra10G0050400 Salix brachista HOM05D001304 ORTHO05D007800 4.1e-15 85.1 89 44.9
Dinv11004 Davidia involucrata HOM05D001304 ORTHO05D007800 5.4e-15 84.7 79 53.2
VMungo1383G2972 Vigna mungo HOM05D001304 ORTHO05D007800 5.4e-15 84.7 79 49.4
Actinidia30684 Actinidia chinensis HOM05D001304 ORTHO05D007800 7.0e-15 84.3 80 48.8
MSTRG.532 Avicennia marina HOM05D001304 ORTHO05D007800 7.0e-15 84.3 79 51.9
CsaV3_2G025240 Cucumis sativus L. HOM05D001304 ORTHO05D007800 7.0e-15 84.3 86 45.3
Glyma.11G247133 Glycine max HOM05D001304 ORTHO05D007800 9.2e-15 84.0 79 48.1
PGR102G3374 Punica granatum HOM05D001304 ORTHO05D007800 9.2e-15 84.0 86 47.7
MELO3C010721.2 Cucumis melo HOM05D001304 ORTHO05D007800 1.6e-14 83.2 86 44.2
MD13G1110200 Malus domestica HOM05D001304 ORTHO05D007800 1.6e-14 83.2 86 47.7
Sc11g0000750 Simmondsia chinensis HOM05D001304 ORTHO05D007800 1.6e-14 83.2 79 48.1
ATR0824G247 Amborella trichopoda HOM05D001304 ORTHO05D007800 3.5e-14 82.0 91 41.8
ClCG08G017380 Citrullus lanatus HOM05D001304 ORTHO05D007800 3.5e-14 82.0 86 44.2
MD16G1110200 Malus domestica HOM05D001304 ORTHO05D007800 3.5e-14 82.0 86 46.5
Phvul.001G258500 Phaseolus vulgaris HOM05D001304 ORTHO05D007800 3.5e-14 82.0 79 45.6
TWI75G0249 Tripterygium wilfordii HOM05D001304 ORTHO05D007800 3.5e-14 82.0 79 48.1
Glyma.18G010200 Glycine max HOM05D001304 ORTHO05D007800 4.6e-14 81.6 79 48.1
DCAR_026485 Daucus carota HOM05D001304 ORTHO05D007800 6.0e-14 81.3 79 49.4
PSO782G2509 Papaver somniferum HOM05D001304 ORTHO05D007800 6.0e-14 81.3 79 46.8
Lj6g0014976 Lotus japonicus HOM05D001304 ORTHO05D007800 7.8e-14 80.9 86 45.3
Peaxi162Scf00160g00921 Petunia axillaris HOM05D001304 ORTHO05D007800 1.0e-13 80.5 89 44.9
SGA_v2.0_scaffold64G21891 Striga asiatica HOM05D001304 ORTHO05D007800 1.0e-13 80.5 69 53.6
Cc11_g16440 Coffea canephora HOM05D001304 ORTHO05D007800 2.3e-13 79.3 79 49.4
Sed0013965 Sechium edule HOM05D001304 ORTHO05D007800 3.9e-13 78.6 86 43.0
FAN22G1988 Fragaria x ananassa HOM05D001304 ORTHO05D007800 5.1e-13 78.2 67 53.7
PSO063G3228 Papaver somniferum HOM05D001304 ORTHO05D007800 2.5e-12 75.9 87 42.5
SalBow2G1645 Salvia bowleyana HOM05D001304 ORTHO05D007800 3.3e-12 75.5 69 52.2
CSS0003445 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D007800 7.3e-12 74.3 93 44.1
Solyc09g014890.3 Solanum lycopersicum HOM05D001304 ORTHO05D007800 1.6e-11 73.2 79 41.8
Sopen09g007800 Solanum pennellii HOM05D001304 ORTHO05D007800 1.6e-11 73.2 79 41.8
CAN.G1220.1 Capsicum annuum HOM05D001304 ORTHO05D007800 3.6e-11 72.0 79 44.3
Mapoly0080s0066 Marchantia polymorpha HOM05D001304 ORTHO05D007800 3.6e-11 72.0 76 38.2
Oeu041694.1 Olea europaea HOM05D001304 ORTHO05D007800 3.6e-11 72.0 111 38.7
Cpa.g.sc86.3 Carica papaya HOM05D001304 ORTHO05D007800 8.1e-11 70.9 99 38.4
Hund25432 Selenicereus undatus HOM05D001304 ORTHO05D007800 8.1e-11 70.9 105 34.3
Pp3c19_17580 Physcomitrium patens HOM05D001304 ORTHO05D007800 2.3e-10 69.3 76 38.2
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 3.1e-10 68.9 76 36.8
Pp3c18_20030 Physcomitrium patens HOM05D001304 ORTHO05D007800 3.4e-09 65.5 80 36.2
Zm00001eb144370 Zea mays HOM05D001304 ORTHO05D007800 4.4e-09 65.1 86 40.7
SMO364G0683 Selaginella moellendorffii HOM05D001304 ORTHO05D007800 5.8e-09 64.7 75 38.7
Os01g0902200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D007800 9.9e-09 63.9 86 40.7
MD02G1151800 Malus domestica HOM05D001304 ORTHO05D007800 7.8e-06 54.3 83 39.8


User provided reference genes

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