Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 9.5e-49 196.4 93 100.0
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 2.1e-48 195.3 93 98.9
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 2.1e-48 195.3 93 98.9
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 5.2e-47 190.7 94 97.9
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 5.2e-47 190.7 94 97.9
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 7.5e-46 186.8 98 91.8
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 2.2e-45 185.3 93 93.5
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 2.2e-45 185.3 93 93.5
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 1.8e-44 182.2 98 89.8
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 3.2e-44 181.4 98 90.8
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 3.2e-44 181.4 98 90.8
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 3.2e-44 181.4 98 90.8
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 1.6e-43 179.1 93 90.3
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 1.6e-43 179.1 93 91.4
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 2.0e-43 178.7 98 89.8
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 1.3e-42 176.0 98 86.7
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 4.0e-39 164.5 100 80.0
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 4.1e-36 154.5 93 76.3
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 1.6e-35 152.5 88 81.8
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.0e-34 148.3 93 73.1
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 3.0e-34 148.3 93 73.1
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 6.6e-34 147.1 93 72.0
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 2.5e-33 145.2 93 71.0
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 7.3e-33 143.7 93 68.8
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 9.5e-33 143.3 93 67.7
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 3.6e-32 141.4 93 68.8
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 8.1e-32 140.2 100 68.0
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 8.1e-32 140.2 97 70.1
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 1.1e-31 139.8 98 71.4
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 1.8e-31 139.0 93 66.7
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 1.8e-31 139.0 97 68.0
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 4.0e-31 137.9 101 68.3
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 4.0e-31 137.9 93 66.7
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 2.0e-30 135.6 99 69.7
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 3.4e-30 134.8 103 68.9
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 4.4e-30 134.4 96 67.7
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 4.4e-30 134.4 96 68.8
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.3e-29 132.9 93 64.5
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 1.3e-29 132.9 98 67.3
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 2.2e-29 132.1 100 67.0
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 2.2e-29 132.1 94 69.1
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 3.7e-29 131.3 99 65.7
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 6.4e-29 130.6 101 64.4
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 1.4e-28 129.4 97 67.0
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 2.4e-28 128.6 106 59.4
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 2.4e-28 128.6 99 64.6
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 4.1e-28 127.9 97 63.9
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 9.2e-28 126.7 101 64.4
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.1e-27 125.6 95 65.3
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.7e-27 125.2 94 61.7
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 2.7e-27 125.2 97 63.9
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 2.7e-27 125.2 94 63.8
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 4.6e-27 124.4 107 59.8
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 4.6e-27 124.4 103 59.2
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 4.6e-27 124.4 103 64.1
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 7.8e-27 123.6 99 63.6
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 7.8e-27 123.6 99 61.6
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 7.8e-27 123.6 103 63.1
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 7.8e-27 123.6 103 63.1
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 1.0e-26 123.2 103 62.1
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 1.0e-26 123.2 111 57.7
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 1.0e-26 123.2 94 68.1
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 1.0e-26 123.2 101 68.3
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 1.3e-26 122.9 105 60.0
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 1.3e-26 122.9 105 60.0
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 1.3e-26 122.9 103 61.2
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 1.3e-26 122.9 103 62.1
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 2.3e-26 122.1 106 62.3
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 3.0e-26 121.7 95 64.2
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 3.0e-26 121.7 103 62.1
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 6.6e-26 120.6 104 60.6
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 6.6e-26 120.6 102 57.8
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 6.6e-26 120.6 105 59.0
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 6.6e-26 120.6 91 60.4
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 6.6e-26 120.6 102 63.7
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 8.6e-26 120.2 103 62.1
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 8.6e-26 120.2 103 63.1
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 1.1e-25 119.8 102 60.8
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 1.1e-25 119.8 104 61.5
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 1.9e-25 119.0 99 60.6
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 2.5e-25 118.6 101 59.4
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.5e-25 118.6 107 59.8
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.5e-25 118.6 107 59.8
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.5e-25 118.6 107 59.8
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 2.5e-25 118.6 103 58.3
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 2.5e-25 118.6 96 59.4
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 3.3e-25 118.2 102 65.7
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 3.3e-25 118.2 104 60.6
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 4.3e-25 117.9 103 58.3
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 7.3e-25 117.1 104 62.5
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 7.3e-25 117.1 105 60.0
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 9.5e-25 116.7 108 62.0
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 2.1e-24 115.5 102 59.8
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 2.1e-24 115.5 96 58.3
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 2.8e-24 115.2 98 61.2
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 6.2e-24 114.0 100 56.0
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 8.1e-24 113.6 102 55.9
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 1.4e-23 112.8 93 58.1
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 1.8e-23 112.5 105 59.0
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 2.3e-23 112.1 102 53.9
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 4.0e-23 111.3 88 63.6
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 5.2e-23 110.9 95 58.9
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.2e-22 109.8 91 60.4
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.2e-22 109.8 99 59.6
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 1.2e-22 109.8 101 58.4
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 1.5e-22 109.4 118 50.0
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 2.6e-22 108.6 97 59.8
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 2.6e-22 108.6 98 57.1
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 1.3e-21 106.3 67 74.6
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 1.7e-21 105.9 100 55.0
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 2.2e-21 105.5 65 76.9
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 2.9e-21 105.1 67 73.1
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 3.2e-20 101.7 106 51.9
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 4.1e-20 101.3 102 54.9
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 5.4e-20 100.9 62 72.6
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 1.6e-19 99.4 93 57.0
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 3.3e-17 91.7 84 51.2
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 5.6e-17 90.9 67 58.2
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 1.6e-16 89.4 84 52.4
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 6.8e-15 84.0 77 49.4
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 8.9e-15 83.6 52 69.2
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 2.0e-14 82.4 82 48.8
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 3.4e-14 81.6 92 48.9
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 9.3e-12 73.6 55 63.6
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 1.6e-11 72.8 50 70.0
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 2.3e-10 68.9 32 87.5
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 3.3e-09 65.1 132 34.8
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 9.6e-09 63.5 70 47.1
CDE05G1960 Ceratophyllum demersum HOM05D006197 ORTHO05D007718 9.9e-06 53.5 62 51.6


User provided reference genes

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